mRNA_P-littoralis_Contig613.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig613.25.1
Unique NamemRNA_P-littoralis_Contig613.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig613.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig613contigP-littoralis_Contig613:72807..73930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size236
Hectar predicted targeting categoryother localisation
Exons2
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791277.4276836-CDS-P-littoralis_Contig613:72806..729291680791277.4276836-CDS-P-littoralis_Contig613:72806..72929Pylaiella littoralis U1_48CDSP-littoralis_Contig613 72807..72929 -
1680791277.4386468-CDS-P-littoralis_Contig613:73819..739301680791277.4386468-CDS-P-littoralis_Contig613:73819..73930Pylaiella littoralis U1_48CDSP-littoralis_Contig613 73820..73930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig613.25.1prot_P-littoralis_Contig613.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig613 72807..73930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig613.25.1

>prot_P-littoralis_Contig613.25.1 ID=prot_P-littoralis_Contig613.25.1|Name=mRNA_P-littoralis_Contig613.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=78bp
NDKKQKTKNTIVSADGALARPPMTTAGAAPTDSTNLKNDKKQKTKNTIVS
ADGALARPPMTTAGAAPTDSTNLKARE*
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mRNA from alignment at P-littoralis_Contig613:72807..73930-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig613.25.1 ID=mRNA_P-littoralis_Contig613.25.1|Name=mRNA_P-littoralis_Contig613.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1124bp|location=Sequence derived from alignment at P-littoralis_Contig613:72807..73930- (Pylaiella littoralis U1_48)
AACGACAAAAAACAAAAAACAAAAAACACTATCGTATCAGCCGACGGTGC
CCTCGCCCGCCCTCCGATGACGACAGCGGGAGCAGCGCCAACTGACTCCA
CGAACTTGAAGGCGAGGGAGTAGGTGCCGTAGACCGTTGCGACGAAATTG
AATTCATGATGAAATGCGCCCACGCGCGAACGGTATGATAGCCCAAGGCA
TCGGCGGGTCGGGCGGCCAAGGTAGGATATTGTATTGACACTGACTGTAA
GATAGATGCCGTTGAGCCCCACCGGTACGAAGCTCTTGCTTGCAGCTTGC
AGTGGAAATCCCAAATAGCCGTCGACTTGTTGGCACTTGCACGTGCGCAG
CAGCTGAACCACGCGGACACGAAGCTCTTTTGCTTGCAGTGGAAATCCTG
TCACGAGTCGTTGGCACTTGCACGTGAGCGGTAGTTGAGGCAGTCGCACG
AAGCTCTTGAGCTTGCAGTGAAAATCCCACCGAGTCGTCGCCGGCTCGTT
GGCACTTGCACGTGTGCAGTACTTGAACCACCGCGGCGCGAAGCTCTTTT
GCTTGCAGTGGAAATCCAAACACGACTCATTGAGGCACTTGCACGTGCGC
CGTAGTTGAAGCTCTCGTGCGAAGCTCTTTTGCTTGCAGTGAAAACCCCA
CCTAGTCGTCGACTCCTTGGCATTTGCACGAAGCTCTTGCTTGCAGTGGC
CGACCGTTCACGTACGTATCGTACGTAGCGCTGACCTCGCCCCCCTCGCC
CCCTTTCTTTCTCCGTCCATGAGCAGCACGCCACAACAATACTACGTACA
GTACCGCAATCTCAAACAGTATGACCGATATCGCCAGATCCAGAATCTGG
GCAACGTATATCGTAGCCGTGGTCATCATCGCCACTGCGGCGCACTCATG
TTGTTGTACGAACGACATCGATGAGCGCCGCAGTGACCCTCTCGCTCGCC
CCGCCCCCGCCCCCGCCCCCCCGCCCCCTTTCTTTCTCCGTCCATGAGCA
GAACGACAAAAAACAAAAAACAAAAAACACTATCGTATCAGCCGACGGTG
CCCTCGCCCGCCCTCCGATGACGACAGCGGGAGCAGCGCCAACTGACTCC
ACGAACTTGAAGGCGAGGGAGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig613:72807..73930-

>mRNA_P-littoralis_Contig613.25.1 ID=mRNA_P-littoralis_Contig613.25.1|Name=mRNA_P-littoralis_Contig613.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig613:72807..73930- (Pylaiella littoralis U1_48)
AACGACAAAAAACAAAAAACAAAAAACACTATCGTATCAGCCGACGGTGC
CCTCGCCCGCCCTCCGATGACGACAGCGGGAGCAGCGCCAACTGACTCCA
CGAACTTGAAGAACGACAAAAAACAAAAAACAAAAAACACTATCGTATCA
GCCGACGGTGCCCTCGCCCGCCCTCCGATGACGACAGCGGGAGCAGCGCC
AACTGACTCCACGAACTTGAAGGCGAGGGAGTAG
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