mRNA_P-littoralis_Contig612.28.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig612.28.2
Unique NamemRNA_P-littoralis_Contig612.28.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig612.28.2 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 4.030e-10
Identity = 77/160 (48.12%), Postives = 89/160 (55.62%), Query Frame = 1 
Query:    1 QGEDEEAIRLYTRSQDVLEKHLGPAHPHVAHSLYNRAGLLYKQGKYVXXXXXXXXXXXXXXXXXXXEHTLMWPSRSITGGVAEKLLLC--IVLYLKCICLDHTP--SHF-----SVTFQGKYAEAERLYERLQAIREKVLCPEHLDVARSLNNQAELLRV 453
            QG+ EEA  LY  S  + EK  GP H  VA  L N AGLL  +    XXXXXXXXXXXXXXXXXXX                E   L   + +  KC+CL  T    HF         QG YAEA+ LYER QAIR+KVL P+H DVA  LNN+A LL++
Sbjct:   87 QGKYEEAEPLYMLSLAIDEKVYGPDHLEVAEDLNNCAGLLSIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESQALNKRVGVEGKCLCLFATSYRPHFVWLNYEYICQGNYAEAKPLYERSQAIRKKVLGPDHPDVATVLNNRAGLLKI 246
[Close]
BLAST of mRNA_P-littoralis_Contig612.28.2 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 3.160e-9
Identity = 74/149 (49.66%), Postives = 84/149 (56.38%), Query Frame = 1 
Query:    1 QGEDEEAIRLYTRSQDVLEKHLGPAHPHVAHSLYNRAGLLYKQGKYVXXXXXXXXXXXXXXXXXXXEHTLMWPSRSITGGVAEKLLLCIVLYLKCICLDHTPSHFSVTFQGKYAEAERLYERLQAIREKVLCPEHLDVARSLNNQAELL 447
            QG+ ++A  LY RS  +LEK  GP HP VA SL NRA LL  Q    XXXXXXXXXXXXXXXXXX               +  +LL      L+               QGKY +AE L ER Q IREKVL PEH DVA+SLNN+A LL
Sbjct:  416 QGKYDQAGPLYDRSLAILEKVHGPDHPDVAQSLNNRAELLRAQXXXXXXXXXXXXXXXXXXXXXX-------------XXLESQLLSNRAELLRA--------------QGKYDDAEPLNERSQTIREKVLGPEHPDVAQSLNNRAGLL 537
[Close]
BLAST of mRNA_P-littoralis_Contig612.28.2 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.010e-8
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:  328 QGKYAEAERLYERLQAIREKVLCPEHLDVARSLNNQAELLR 450
            QGKY EAE LYER QAI+EKVL  EH DVA SLNN+ ELLR
Sbjct:   18 QGKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLR 58
[Close]
BLAST of mRNA_P-littoralis_Contig612.28.2 vs. uniprot
Match: D7G3B0_ECTSI (Tetratricopeptide repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B0_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 7.720e-8
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:  301 TPSHFSVTFQGKYAEAERLYERLQAIREKVLCPEHLDVARSLNNQAELL 447
            T SHF+   QGKYAEAE+LYER +AIR+K L P+H DVARSLN++A LL
Sbjct:  198 TLSHFTDA-QGKYAEAEQLYERSEAIRDKTLDPDHPDVARSLNDRALLL 245
[Close]
BLAST of mRNA_P-littoralis_Contig612.28.2 vs. uniprot
Match: A0A6H5K0C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.130e-7
Identity = 58/143 (40.56%), Postives = 68/143 (47.55%), Query Frame = 1 
Query:   22 IRLYTRSQDVLEKHLGPAHPHVAHSLYNRAGLLYKQGKYVXXXXXXXXXXXXXXXXXXXEHTLMWPSRSITGGVAEKLLLCIVLYLKCICLDHTPSHFS-----VTFQGKYAEAERLYERLQAIREKVLCPEHLDVARSLNNQ 435
            IRLY  +  + EK LGP HP +A +L NRAGLL  QGKYV           XXXXXXXX                                 HT   FS     V F+GKYAEA+ LY R   I EK+L P+H D+A  LNN+
Sbjct:   78 IRLYHAA--IKEKVLGPDHPSLATTLNNRAGLLEAQGKYVEAEPLYERSQAXXXXXXXXXXXXXXXXXXXXAAGF---------------FHHTRMAFSNVTWTVRFRGKYAEADPLYLRAIEIGEKMLGPDHPDLATRLNNR 203
[Close]
BLAST of mRNA_P-littoralis_Contig612.28.2 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.560e-7
Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:  310 HFSVTFQGKYAEAERLYERLQAIREKVLCPEHLDVARSLNNQAEL 444
            H  +TFQGKY EA  LYER  AIREKVL P+H DVA+SLNN+A L
Sbjct:  792 HVFITFQGKYEEAGPLYERSLAIREKVLGPDHPDVAQSLNNRALL 836
[Close]
BLAST of mRNA_P-littoralis_Contig612.28.2 vs. uniprot
Match: A0A6H5K8Z8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z8_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.480e-7
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:  328 QGKYAEAERLYERLQAIREKVLCPEHLDVARSLNNQAELLR 450
            QGKY +AE+LYER  AIREKVL PEH DVA+SLNN+ ELLR
Sbjct:   16 QGKYDDAEQLYERSLAIREKVLGPEHPDVAQSLNNR-ELLR 55
[Close]
BLAST of mRNA_P-littoralis_Contig612.28.2 vs. uniprot
Match: A0A6H5KB97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB97_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.970e-7
Identity = 31/39 (79.49%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:  328 QGKYAEAERLYERLQAIREKVLCPEHLDVARSLNNQAEL 444
            QGKYAEAE LYER QAIRE VL PEH DV RSLNN A L
Sbjct:  344 QGKYAEAEPLYERSQAIRENVLGPEHSDVGRSLNNLAAL 382
[Close]
BLAST of mRNA_P-littoralis_Contig612.28.2 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.660e-7
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 1 
Query:  199 EHTLMWPSRSITGGVAEKLLLCIVLYLKCICLDHTPSHFSVTFQGKYAEAERLYERLQAIREKVLCPEHLDVARSLNNQAELLR 450
            EH  +  S +   G+  K    I   +    L H  S +    QGKY+EAE LY+R QA++ K L PEH  +A +LNN+AELLR
Sbjct:  145 EHPDVAASLNNRAGLLRKCFSTIPFTI--FTLKHDSSRYPHCIQGKYSEAEPLYDRCQAMKGKALGPEHPSLAATLNNRAELLR 226
[Close]
BLAST of mRNA_P-littoralis_Contig612.28.2 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 6.420e-7
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:  280 KCICLDHTPSHFSVTFQGKYAEAERLYERLQAIREKVLCPEHLDVARSLNNQAELL 447
            K +   +    F    QGKYAEAE LYER  AI+EKVL PEH DVA SL+N+A LL
Sbjct:  677 KAVARSYWSVGFLFNIQGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLL 732
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig612.28.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5K5H9_9PHAE4.030e-1048.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIY6_9PHAE3.160e-949.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3K8_9PHAE2.010e-875.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3B0_ECTSI7.720e-867.35Tetratricopeptide repeat protein n=1 Tax=Ectocarpu... [more]
A0A6H5K0C4_9PHAE1.130e-740.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJK0_9PHAE2.560e-768.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8Z8_9PHAE3.480e-775.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB97_9PHAE3.970e-779.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUC1_9PHAE5.660e-741.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
D7G722_ECTSI6.420e-757.14NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig612contigP-littoralis_Contig612:161464..162998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G3B0
PFAMsNB-ARC,TPR_10,TPR_12,TPR_16,TPR_4,TPR_7,TPR_8
Model size573
Max annot lvl2759|Eukaryota
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.27e-08
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Descriptiondetermination of stomach left/right asymmetry
Cds size573
COG categoryC
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791277.2301261-CDS-P-littoralis_Contig612:161463..1615921680791277.2301261-CDS-P-littoralis_Contig612:161463..161592Pylaiella littoralis U1_48CDSP-littoralis_Contig612 161464..161592 +
1680791277.246046-CDS-P-littoralis_Contig612:161843..1621701680791277.246046-CDS-P-littoralis_Contig612:161843..162170Pylaiella littoralis U1_48CDSP-littoralis_Contig612 161844..162170 +
1680791277.2607534-CDS-P-littoralis_Contig612:162881..1629981680791277.2607534-CDS-P-littoralis_Contig612:162881..162998Pylaiella littoralis U1_48CDSP-littoralis_Contig612 162882..162998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig612.28.2prot_P-littoralis_Contig612.28.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig612 161464..162998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig612.28.2

>prot_P-littoralis_Contig612.28.2 ID=prot_P-littoralis_Contig612.28.2|Name=mRNA_P-littoralis_Contig612.28.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=191bp
QGEDEEAIRLYTRSQDVLEKHLGPAHPHVAHSLYNRAGLLYKQGKYVEAK
PLYERSQAIREKVLGAEHTLMWPSRSITGGVAEKLLLCIVLYLKCICLDH
TPSHFSVTFQGKYAEAERLYERLQAIREKVLCPEHLDVARSLNNQAELLR
VQGKYDEAGRLYERFLRSARKYWALITRTWKIRSTTGRGC*
back to top

mRNA from alignment at P-littoralis_Contig612:161464..162998+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig612.28.2 ID=mRNA_P-littoralis_Contig612.28.2|Name=mRNA_P-littoralis_Contig612.28.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1535bp|location=Sequence derived from alignment at P-littoralis_Contig612:161464..162998+ (Pylaiella littoralis U1_48)
CAGGGCGAGGATGAGGAGGCCATTCGGCTATATACACGCTCCCAGGATGT
TCTCGAGAAACATCTAGGTCCTGCTCATCCTCACGTGGCTCATTCGCTCT
ACAACCGGGCGGGATTGTTGTACAAGCAGGTGAGATCCGACAGAAAATTC
CAGGACAAGGGGACTTGTTGAGAGCGCAGTTGAGAGCTGTACATATTCCA
GGAAAGCTCATATGGTGCCTGGTAGATGCTGTTTAAGCTCAACAATCGGG
GGTTGTTTGAGAGTCAGGTGAGAGAGCCAAACAATCCTTCCAGAAGCTGC
TAGAAGAAAGTATTCCTCCGCAGTTCTTGATCCGACTTGTTCTACAACAC
GACTCTGCCACGCTGTCGACTGTATTCCAGGGGAAGTACGTTGAGGCCAA
GCCGCTATATGAGCGGTCGCAGGCCATACGGGAGAAGGTTCTGGGTGCGG
AGCACACACTGATGTGGCCCAGTCGCTCAATAACCGGCGGGGTTGCTGAA
AAATTGTTGCTCTGCATTGTTCTATATTTGAAATGCATTTGCCTTGATCA
CACTCCGTCACACTTTTCTGTCACATTCCAGGGTAAATACGCTGAGGCCG
AGCGACTCTATGAGCGGTTGCAAGCCATACGAGAGAAAGTATTGTGTCCG
GAGCATCTAGATGTGGCCCGGTCGCTCAACAACCAGGCGGAGTTGTTGAG
AGTGCAGGTGAGAGCAGTGAGAAACTTCTAAAACCGCTCTTTTGGTGCTC
GATGGATGTTGTATGTAGTGCTCAACAACCGGGCGGGGTTGTTGAGAGTG
CAGGTGAGAGCCGTCAGAAGTTTTCATGAAACCACTTGGGGTTCATTTTT
GTTGGTGAAATGGTTTTTATTTTTGGTGAAATACGGCCTGCACCACTCCC
TCACAAAATGCCAATACTTCTTGCACAGGGCAAGCTTGAAGAGGCCTTGG
AGGTAAAGAAAAATGGCTTTGCTATCGATCGAGGAGAGAATGCTACCGCC
GGAGCACTCACAGATGGCCTCATCGCTCAACAACCGGGCGGGGCGGGGTT
ATTGAGAAAATGTTCCTCCCAGTTCTTTCTAGACTTTACACTGAAATACG
ACTGTGTCACGGTGTCCACTGCATACACGGCAAATACGCGGAGACTGAGC
CACTCTGTGAACGGTGTCAGGCGATAAAGGAGAACGTTCTAGGTCCTGAC
CGCCCAAGTTTAGCTACAACGCTCAACAATCCGGCGGCGTTGTTAAACCA
GTCAGGTGAAAGCCGTCAGAAGTTTCCAGGCACATTCTTGTCGTGCTCTG
TGGACGTTGAAGTGCTCAACAACCGGGCTCGGTTGCCGAGCGCTTTTTAC
TCCGCAGTCAACGCCATGAGCCCACTAGCCTTGACCACACTACGTCGTGG
TTTTCCCTCATGCTTCAGGGCAAGTATGACGAGGCTGGGCGGTTGTATGA
ACGCTTCCTGCGATCCGCGAGAAAGTACTGGGCCTTGATCACCCGGACGT
GGAAGATTCGCTCAACAACCGGGCGTGGTTGTTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig612:161464..162998+

>mRNA_P-littoralis_Contig612.28.2 ID=mRNA_P-littoralis_Contig612.28.2|Name=mRNA_P-littoralis_Contig612.28.2|organism=Pylaiella littoralis U1_48|type=CDS|length=573bp|location=Sequence derived from alignment at P-littoralis_Contig612:161464..162998+ (Pylaiella littoralis U1_48)
CAGGGCGAGGATGAGGAGGCCATTCGGCTATATACACGCTCCCAGGATGT
TCTCGAGAAACATCTAGGTCCTGCTCATCCTCACGTGGCTCATTCGCTCT
ACAACCGGGCGGGATTGTTGTACAAGCAGGGGAAGTACGTTGAGGCCAAG
CCGCTATATGAGCGGTCGCAGGCCATACGGGAGAAGGTTCTGGGTGCGGA
GCACACACTGATGTGGCCCAGTCGCTCAATAACCGGCGGGGTTGCTGAAA
AATTGTTGCTCTGCATTGTTCTATATTTGAAATGCATTTGCCTTGATCAC
ACTCCGTCACACTTTTCTGTCACATTCCAGGGTAAATACGCTGAGGCCGA
GCGACTCTATGAGCGGTTGCAAGCCATACGAGAGAAAGTATTGTGTCCGG
AGCATCTAGATGTGGCCCGGTCGCTCAACAACCAGGCGGAGTTGTTGAGA
GTGCAGGGCAAGTATGACGAGGCTGGGCGGTTGTATGAACGCTTCCTGCG
ATCCGCGAGAAAGTACTGGGCCTTGATCACCCGGACGTGGAAGATTCGCT
CAACAACCGGGCGTGGTTGTTGA
back to top