prot_P-littoralis_Contig116.39.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig116.39.1
Unique Nameprot_P-littoralis_Contig116.39.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length620
Homology
BLAST of mRNA_P-littoralis_Contig116.39.1 vs. uniprot
Match: D7FWN4_ECTSI (BHLH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWN4_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 2.540e-112
Identity = 278/531 (52.35%), Postives = 328/531 (61.77%), Query Frame = 0
Query:  104 QQHKREIGSDSSSSSMLATAPKCTRTAKNGREQQRAQKISDMIDQLKVTLDRANFSDGSSSKLHVLMSCETYLRSLKDKVRCYEMEAKLREAARGHQQQSPSENGASSTAAIAAASPRINSRVKNWAEINNTARGRGGTSTTSTASCGSSTGSGETSRTDTGDNCSTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGGRPTRVGDGGGVLGIAEVAPRVTLSGTSSSAADNGSXXXXXXXXXXXXXXXXXXXAGTTDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE--EGTAGARMRVVNYFDIFRLSNVPMAIADKTGALADVNDAMRGFGRIHQDTVKSLTVGSLVAPESSKALHEAMNSML--AASSVPQDPPAP-PLVGAQPFLANAGIGNRPTLLTVSLVYDESGEPSAFHIALIPRSTGT---------TVDGGGET-GFVPPDQRGSTEYDAGAPEFSVEKRLVQEACEEGVTDEGACSGKRGPERTWDAGGQNKSQKRRAAQA 619
            Q+ + + GSD ++SSMLA A K TRTAKNGREQQRAQKISD+IDQLK TLD+AN SDGSSSKLHVL+SCE+YLRSL+DK++CYEME KLR+AARGH+QQ+P++   S TA  + +S  +++ VK+WA        +G       A  GS                                                           +GDGG            T     + ++D G     X               GTTDS      XXXXXXXXXXXXX  X     XXXXXXXXXXXXXXE  EGTAGARMRVVNYFDIFRLSNVPMAIADK GAL DVNDAMRGFGRI+Q+TV +LTV SLVAPES++AL +AM+ ML  AA+S P + P P P +GAQPFLANAGIGNRPTLLTVSLV+DE GE SAFH+ALIPR+TGT           DGGG+T G     +R STEY+A APEFSV+        E+G    G  + KRG  R+WDAGGQ+KSQKRR+ QA
Sbjct:   90 QRPQHQAGSDRNTSSMLAMAQKSTRTAKNGREQQRAQKISDVIDQLKATLDKANVSDGSSSKLHVLVSCESYLRSLRDKIQCYEMETKLRQAARGHRQQAPAD---SDTARASGSS--VDNDVKSWAA-------KGNAEVVGPAREGS-----------------------------------------------------------LGDGGXXXXXXXXXSSSTXXDXDAXSSDXGXGSTSX---------------GTTDSGSQDFTXXXXXXXXXXXXXFSXYTGSLXXXXXXXXXXXXXXESEEGTAGARMRVVNYFDIFRLSNVPMAIADKAGALVDVNDAMRGFGRINQETVSTLTVRSLVAPESAQALQDAMSGMLLAAAASSPSESPVPSPQIGAQPFLANAGIGNRPTLLTVSLVFDEGGEASAFHVALIPRTTGTGDGXXXXXXXTDGGGDTDGLAASRERHSTEYNADAPEFSVQ-------AEKGEGGGGCSARKRGRARSWDAGGQSKSQKRRSGQA 527          
BLAST of mRNA_P-littoralis_Contig116.39.1 vs. uniprot
Match: A0A7R9U164_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U164_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 7.780e-7
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 0
Query:  128 RTAKNGREQQRAQKISDMIDQLKVTLDRANFSDGSSSKLHVLMSCETYLRSLKDKVRCYEMEAKLREAARGHQQ 201
            R A+N REQ+RA +ISD+I+QLK TL  A F   S+SK HVL + + Y++SL+ + RC  ME K+ E  +G +Q
Sbjct:  147 RIARNYREQKRAHRISDVIEQLKKTLAAAGFPTRSTSKYHVLKAAQAYIQSLQHRERCAMMEKKVLEQLQGQKQ 220          
BLAST of mRNA_P-littoralis_Contig116.39.1 vs. uniprot
Match: A0A6V1XER4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XER4_HETAK)

HSP 1 Score: 62.4 bits (150), Expect = 1.130e-6
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 0
Query:  118 SMLATAPKCT-------RTAKNGREQQRAQKISDMIDQLKVTLDRANFSDGSSSKLHVLMSCETYLRSLKDKVRCYEMEAKLREA 195
            SML T P          R A+N REQ+RA +I+ +I+++K  L+R +F   SSSK H+L +CE  +RSL+ + + YEME +LR+A
Sbjct:  121 SMLTTFPPSKSAESHKKRLARNEREQKRAHRIAQVIEEIKEMLERGSFPLKSSSKYHILSACEEMIRSLEMRTQSYEMEKQLRDA 205          
BLAST of mRNA_P-littoralis_Contig116.39.1 vs. uniprot
Match: A0A7S1TUJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUJ5_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.040e-5
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 0
Query:  128 RTAKNGREQQRAQKISDMIDQLKVTLDRANFSDGSSSKLHVLMSCETYLRSLKDKVRCYEMEAKL 192
            R  +N REQ+RA +ISD+I+QLK +L  A F  GS SK HVL +   Y+RSL+ K +C++ E  L
Sbjct:  213 RMQRNFREQRRAHRISDVIEQLKTSLADAGFPTGSQSKYHVLRAATAYIRSLQHKEQCFKYERDL 277          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig116.39.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FWN4_ECTSI2.540e-11252.35BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7R9U164_9STRA7.780e-748.65Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6V1XER4_HETAK1.130e-643.53Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1TUJ5_9STRA1.040e-549.23Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 605..619
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 586..619
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..218
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 328..402
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 226..303
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 196..412
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 127..198

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig116contigP-littoralis_Contig116:155171..158732 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig116.39.1mRNA_P-littoralis_Contig116.39.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig116 154140..160043 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig116.39.1 ID=prot_P-littoralis_Contig116.39.1|Name=mRNA_P-littoralis_Contig116.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=620bp
MDFGGAAAASQQQQQHGGGLSFLDGAGGVTATAKISSARSVGGSGKERAT
GVAGNHIPSAAAGAGAGAADRPPLLQQLGLSARAGAGAADRAPLLQQLGL
SPAQQHKREIGSDSSSSSMLATAPKCTRTAKNGREQQRAQKISDMIDQLK
VTLDRANFSDGSSSKLHVLMSCETYLRSLKDKVRCYEMEAKLREAARGHQ
QQSPSENGASSTAAIAAASPRINSRVKNWAEINNTARGRGGTSTTSTASC
GSSTGSGETSRTDTGDNCSTSGGGGGSSTSSRRRHNKLSLYSASSSSSDD
EENNPGGRPTRVGDGGGVLGIAEVAPRVTLSGTSSSAADNGSSAGSDGDT
GSSDSGGGSTSAGTTDSASQGFTDTTSRGFTTDSSFSGYTGSMGSGDTAS
ADGGSDESEEGTAGARMRVVNYFDIFRLSNVPMAIADKTGALADVNDAMR
GFGRIHQDTVKSLTVGSLVAPESSKALHEAMNSMLAASSVPQDPPAPPLV
GAQPFLANAGIGNRPTLLTVSLVYDESGEPSAFHIALIPRSTGTTVDGGG
ETGFVPPDQRGSTEYDAGAPEFSVEKRLVQEACEEGVTDEGACSGKRGPE
RTWDAGGQNKSQKRRAAQA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036638HLH_DNA-bd_sf