mRNA_P-littoralis_Contig612.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig612.38.1
Unique NamemRNA_P-littoralis_Contig612.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig612.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig612contigP-littoralis_Contig612:171983..172590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size274
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791275.9281278-CDS-P-littoralis_Contig612:171982..1720621680791275.9281278-CDS-P-littoralis_Contig612:171982..172062Pylaiella littoralis U1_48CDSP-littoralis_Contig612 171983..172062 +
1680791275.9385617-CDS-P-littoralis_Contig612:172398..1725881680791275.9385617-CDS-P-littoralis_Contig612:172398..172588Pylaiella littoralis U1_48CDSP-littoralis_Contig612 172399..172588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig612.38.1prot_P-littoralis_Contig612.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig612 171983..172588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig612.38.1

>prot_P-littoralis_Contig612.38.1 ID=prot_P-littoralis_Contig612.38.1|Name=mRNA_P-littoralis_Contig612.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
CWRQGSRQRGRRLYCTTYAASSITWRRSCTTSSWKSRKMPSPSSSSTRVK
NIWLQILLDYLDEYVGGFRCDSGEGAGPNVTDIGLAGGRG
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mRNA from alignment at P-littoralis_Contig612:171983..172590+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig612.38.1 ID=mRNA_P-littoralis_Contig612.38.1|Name=mRNA_P-littoralis_Contig612.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=608bp|location=Sequence derived from alignment at P-littoralis_Contig612:171983..172590+ (Pylaiella littoralis U1_48)
TGTTGGAGGCAGGGTTCAAGACAGCGCGGGAGGAGATTGTATTGCACTAC
CTATGCTGCATCATCAATCACGTGGAGGAGGTGGGTTGATGCGGTGTTCA
ATAGGAAGTGAGGAAGACATACCAGACGAAATTTGCCCAAGGATTACAAT
CTCCATTCCGCAGCCGTAGTTGATTAAGACATAAACTCCATCCTCCCTCG
GTACGTTACAGCGCTGTGTATTTTGTATCGTCGGGGTACGCTATCTTTCT
GATTCCTTGTGTGTTGGAGCAATCATCGCTCCGAGCGCTTAGTTTTGGAG
ACAACCATTCTGATTTTCTCTTCTATAGCTTGGACTCGACGGCCACGTAG
CTGAGGCACCCTCCCCGTGCCCGCGCTCCTCTCCTCGGACCGCTCCCCGT
CCCCCCGTTGCTGCAGGAGTTGTACAACTTCTTCGTGGAAGAGCAGAAAA
ATGCCATCGCCATCAAGCTCGAGTACCCGAGTCAAAAATATCTGGTTGCA
AATCCTACTCGATTACCTCGACGAGTATGTGGGCGGGTTCAGATGTGACT
CGGGCGAAGGGGCAGGCCCCAACGTGACCGACATCGGGCTAGCAGGGGGT
CGTGGCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig612:171983..172590+

>mRNA_P-littoralis_Contig612.38.1 ID=mRNA_P-littoralis_Contig612.38.1|Name=mRNA_P-littoralis_Contig612.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig612:171983..172590+ (Pylaiella littoralis U1_48)
TGTTGGAGGCAGGGTTCAAGACAGCGCGGGAGGAGATTGTATTGCACTAC
CTATGCTGCATCATCAATCACGTGGAGGAGGAGTTGTACAACTTCTTCGT
GGAAGAGCAGAAAAATGCCATCGCCATCAAGCTCGAGTACCCGAGTCAAA
AATATCTGGTTGCAAATCCTACTCGATTACCTCGACGAGTATGTGGGCGG
GTTCAGATGTGACTCGGGCGAAGGGGCAGGCCCCAACGTGACCGACATCG
GGCTAGCAGGGGGTCGTGGC
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