mRNA_P-littoralis_Contig611.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig611.41.1
Unique NamemRNA_P-littoralis_Contig611.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig611.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig611contigP-littoralis_Contig611:169619..170581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size964
Hectar predicted targeting categoryother localisation
Exons1
Cds size741
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791275.8709075-UTR-P-littoralis_Contig611:169618..1698401680791275.8709075-UTR-P-littoralis_Contig611:169618..169840Pylaiella littoralis U1_48UTRP-littoralis_Contig611 169619..169840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791275.8823755-CDS-P-littoralis_Contig611:169840..1705811680791275.8823755-CDS-P-littoralis_Contig611:169840..170581Pylaiella littoralis U1_48CDSP-littoralis_Contig611 169841..170581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig611.41.1prot_P-littoralis_Contig611.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig611 169841..170581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig611.41.1

>prot_P-littoralis_Contig611.41.1 ID=prot_P-littoralis_Contig611.41.1|Name=mRNA_P-littoralis_Contig611.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=247bp
MSVLAIDMAAATAPPSMDAITQLCTETDAQNVSVWMPAKIAMGAGPRSAA
DLDLEDVVASVVQLAGAGDAPDPPKVFTIGMNARGEGGSVATVELRQKRA
LCQSLVEYLWRCTGNGGLKIGSGFLILPSAFPPIPPVSSGVGGGATEPGL
PPQAPGLGGAAGGPSDPAEVGSADGGGSAAAPGSRKRTLAELHAAVDELS
ERQSLADGLGQPAERDAVATPPARRPMTYVSIPDKVRFYVCLALCIR
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mRNA from alignment at P-littoralis_Contig611:169619..170581+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig611.41.1 ID=mRNA_P-littoralis_Contig611.41.1|Name=mRNA_P-littoralis_Contig611.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=963bp|location=Sequence derived from alignment at P-littoralis_Contig611:169619..170581+ (Pylaiella littoralis U1_48)
GCCCGCCCCGCTCCTACCGTCTCGTGGCTTTGCCGCGGTGCGCGTTTTCC
GGTGGTGCTCTCTCCCTCCGTGCTGATTGCTGGCGGCGGTCTGGCTTGTT
GGTCTTCGCTACAGGGGGCTCTCGACCTCCCCCTTTTTTCTGCCTCTCAG
GATCCGCCTTTCTTTTCTGTTCTTGGTTTCTAGCCTCTAGTGTCTCTCGC
CTCCACCTGCCGTCCTTCCGGAATGAGTGTCCTCGCCATCGACATGGCGG
CCGCCACTGCGCCTCCCAGCATGGATGCCATCACCCAGCTGTGCACAGAG
ACGGACGCGCAGAACGTGTCGGTTTGGATGCCGGCTAAAATCGCGATGGG
TGCTGGGCCGCGATCTGCAGCGGATCTCGATCTCGAGGATGTCGTTGCCT
CCGTCGTGCAACTTGCTGGAGCAGGCGACGCACCAGACCCGCCGAAGGTC
TTCACCATCGGCATGAACGCCCGTGGCGAGGGCGGCTCCGTCGCCACCGT
CGAGCTCCGCCAGAAGCGGGCGCTCTGCCAGTCGCTGGTGGAGTACCTGT
GGCGATGCACGGGGAACGGCGGACTGAAAATCGGATCCGGTTTTCTTATC
CTACCGTCGGCCTTTCCGCCGATCCCGCCCGTGTCTTCGGGCGTTGGAGG
GGGTGCAACAGAACCAGGCCTTCCGCCTCAGGCGCCAGGGTTAGGGGGAG
CTGCTGGAGGGCCAAGTGATCCAGCGGAAGTTGGGAGCGCCGATGGTGGC
GGTTCGGCGGCAGCCCCGGGCTCCCGCAAACGCACCTTGGCCGAACTTCA
CGCTGCCGTCGACGAATTATCTGAGCGGCAGAGCCTGGCGGACGGACTTG
GGCAACCAGCGGAACGAGATGCGGTGGCTACGCCCCCCGCCCGGCGTCCC
ATGACCTACGTCTCAATTCCCGATAAGGTGAGATTTTACGTGTGTTTGGC
TTTGTGTATCCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig611:169619..170581+

>mRNA_P-littoralis_Contig611.41.1 ID=mRNA_P-littoralis_Contig611.41.1|Name=mRNA_P-littoralis_Contig611.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=741bp|location=Sequence derived from alignment at P-littoralis_Contig611:169619..170581+ (Pylaiella littoralis U1_48)
ATGAGTGTCCTCGCCATCGACATGGCGGCCGCCACTGCGCCTCCCAGCAT
GGATGCCATCACCCAGCTGTGCACAGAGACGGACGCGCAGAACGTGTCGG
TTTGGATGCCGGCTAAAATCGCGATGGGTGCTGGGCCGCGATCTGCAGCG
GATCTCGATCTCGAGGATGTCGTTGCCTCCGTCGTGCAACTTGCTGGAGC
AGGCGACGCACCAGACCCGCCGAAGGTCTTCACCATCGGCATGAACGCCC
GTGGCGAGGGCGGCTCCGTCGCCACCGTCGAGCTCCGCCAGAAGCGGGCG
CTCTGCCAGTCGCTGGTGGAGTACCTGTGGCGATGCACGGGGAACGGCGG
ACTGAAAATCGGATCCGGTTTTCTTATCCTACCGTCGGCCTTTCCGCCGA
TCCCGCCCGTGTCTTCGGGCGTTGGAGGGGGTGCAACAGAACCAGGCCTT
CCGCCTCAGGCGCCAGGGTTAGGGGGAGCTGCTGGAGGGCCAAGTGATCC
AGCGGAAGTTGGGAGCGCCGATGGTGGCGGTTCGGCGGCAGCCCCGGGCT
CCCGCAAACGCACCTTGGCCGAACTTCACGCTGCCGTCGACGAATTATCT
GAGCGGCAGAGCCTGGCGGACGGACTTGGGCAACCAGCGGAACGAGATGC
GGTGGCTACGCCCCCCGCCCGGCGTCCCATGACCTACGTCTCAATTCCCG
ATAAGGTGAGATTTTACGTGTGTTTGGCTTTGTGTATCCGG
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