mRNA_P-littoralis_Contig611.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig611.17.1
Unique NamemRNA_P-littoralis_Contig611.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig611.17.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 1.350e-49
Identity = 78/83 (93.98%), Postives = 82/83 (98.80%), Query Frame = 3 
Query:   93 NSGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRDFVMNLQ 341
            ++GMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:   37 DAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 119
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BLAST of mRNA_P-littoralis_Contig611.17.1 vs. uniprot
Match: A0A6H5KPI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPI2_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 5.320e-46
Identity = 74/80 (92.50%), Postives = 76/80 (95.00%), Query Frame = 3 
Query:  102 MPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRDFVMNLQ 341
            MPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEIS THVTSE+QHADFLTKAIS+E F LHRDFVMN Q
Sbjct:    1 MPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISNTHVTSEFQHADFLTKAISKEPFALHRDFVMNSQ 80
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BLAST of mRNA_P-littoralis_Contig611.17.1 vs. uniprot
Match: A0A6H5K826_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K826_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 3.050e-45
Identity = 72/83 (86.75%), Postives = 78/83 (93.98%), Query Frame = 3 
Query:   93 NSGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRDFVMNLQ 341
            ++GMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHV +++QHADFLTKAI +E   LHRDFVMNLQ
Sbjct:   21 DAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAICKEPCALHRDFVMNLQ 103
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BLAST of mRNA_P-littoralis_Contig611.17.1 vs. uniprot
Match: A0A6H5JT91_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT91_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.160e-44
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 3 
Query:  102 MPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRDFVMNLQ 341
            MPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:  351 MPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 430
[Close]
BLAST of mRNA_P-littoralis_Contig611.17.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 4.960e-44
Identity = 78/83 (93.98%), Postives = 82/83 (98.80%), Query Frame = 3 
Query:   93 NSGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRDFVMNLQ 341
            ++GMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct: 1390 DAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 1472
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BLAST of mRNA_P-littoralis_Contig611.17.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 9.370e-44
Identity = 74/83 (89.16%), Postives = 80/83 (96.39%), Query Frame = 3 
Query:   93 NSGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRDFVMNLQ 341
            ++GMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISIT+V + +QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:  239 DAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMNLQ 321
[Close]
BLAST of mRNA_P-littoralis_Contig611.17.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.340e-43
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 3 
Query:   93 NSGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRDFVMNL 338
            ++GMPCIPVFEDN   IQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QH D LTKAIS+ESF LHRDFVMNL
Sbjct:   87 DAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTKAISKESFALHRDFVMNL 168
[Close]
BLAST of mRNA_P-littoralis_Contig611.17.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.910e-43
Identity = 73/80 (91.25%), Postives = 78/80 (97.50%), Query Frame = 3 
Query:   93 NSGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRDFVM 332
            ++GMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QHADFLTKA S+ESF LHRDFV+
Sbjct:  229 DAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKATSKESFALHRDFVI 308
[Close]
BLAST of mRNA_P-littoralis_Contig611.17.1 vs. uniprot
Match: A0A6H5K9U4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U4_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 2.110e-43
Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 3 
Query:   93 NSGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRDFVMNLQ 341
            ++ MPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:  697 DASMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 779
[Close]
BLAST of mRNA_P-littoralis_Contig611.17.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 4.020e-43
Identity = 74/83 (89.16%), Postives = 79/83 (95.18%), Query Frame = 3 
Query:   93 NSGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRDFVMNLQ 341
            ++GMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHV + +QHADFLTKAIS+ES  LHRDFVMNLQ
Sbjct:  356 DAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMNLQ 438
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig611.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNH6_9PHAE1.350e-4993.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPI2_9PHAE5.320e-4692.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K826_9PHAE3.050e-4586.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT91_9PHAE1.160e-4496.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JHY5_9PHAE4.960e-4493.98Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KP70_9PHAE9.370e-4489.16Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT9_9PHAE1.340e-4387.80Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K684_9PHAE1.910e-4391.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9U4_9PHAE2.110e-4392.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JEF2_9PHAE4.020e-4389.16Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig611contigP-littoralis_Contig611:124096..124439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog90675.XP_010506885.1
PFAMsPhyH
Model size344
Max annot lvl35493|Streptophyta
KEGG koko:K00477
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016705,GO:0016706,GO:0044464,GO:0048244,GO:0051213,GO:0055114,GO:0071944
Exons1
Evalue1.38e-15
EggNOG OGsCOG2801@1|root,COG5285@1|root,KOG0017@2759|Eukaryota,KOG3290@2759|Eukaryota,37PY8@33090|Viridiplantae,3GG3P@35493|Streptophyta,3HYAG@3699|Brassicales
EC1.14.11.18
DescriptionPhytanoyl-CoA dioxygenase (PhyH)
Cds size243
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791275.6911216-UTR-P-littoralis_Contig611:124095..1241961680791275.6911216-UTR-P-littoralis_Contig611:124095..124196Pylaiella littoralis U1_48UTRP-littoralis_Contig611 124096..124196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791275.713112-CDS-P-littoralis_Contig611:124196..1244391680791275.713112-CDS-P-littoralis_Contig611:124196..124439Pylaiella littoralis U1_48CDSP-littoralis_Contig611 124197..124439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig611.17.1prot_P-littoralis_Contig611.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig611 124197..124439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig611.17.1

>prot_P-littoralis_Contig611.17.1 ID=prot_P-littoralis_Contig611.17.1|Name=mRNA_P-littoralis_Contig611.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=81bp
MPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHV
TSEYQHADFLTKAISRESFDLHRDFVMNLQ*
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mRNA from alignment at P-littoralis_Contig611:124096..124439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig611.17.1 ID=mRNA_P-littoralis_Contig611.17.1|Name=mRNA_P-littoralis_Contig611.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=344bp|location=Sequence derived from alignment at P-littoralis_Contig611:124096..124439+ (Pylaiella littoralis U1_48)
GTGAGTTTTCTAGAAGTAGTGCCGTTTGTATTTTTCGATTGATGTCTTGA
AGGAAGTGTTGTTTTTGAGGCAGGTTTGGCGTTTTTGTTGCCAACAGCGG
CATGCCTTGCATCCCAGTGTTCGAGGACAACCAGGGTGCGATTCAGATCG
CCCACAATCCAATCACCAACTCGAACTCGAAGCACATAGACGTACGGCAT
CATTTTATCAGGGAACTGGTAGAGAGGAAGGAGATTTCGATCACACACGT
GACATCGGAATATCAGCATGCAGATTTCTTGACGAAAGCAATCAGCAGGG
AGTCTTTTGACCTGCACCGTGATTTTGTGATGAATTTGCAGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig611:124096..124439+

>mRNA_P-littoralis_Contig611.17.1 ID=mRNA_P-littoralis_Contig611.17.1|Name=mRNA_P-littoralis_Contig611.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=243bp|location=Sequence derived from alignment at P-littoralis_Contig611:124096..124439+ (Pylaiella littoralis U1_48)
ATGCCTTGCATCCCAGTGTTCGAGGACAACCAGGGTGCGATTCAGATCGC
CCACAATCCAATCACCAACTCGAACTCGAAGCACATAGACGTACGGCATC
ATTTTATCAGGGAACTGGTAGAGAGGAAGGAGATTTCGATCACACACGTG
ACATCGGAATATCAGCATGCAGATTTCTTGACGAAAGCAATCAGCAGGGA
GTCTTTTGACCTGCACCGTGATTTTGTGATGAATTTGCAGTGA
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