mRNA_P-littoralis_Contig611.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig611.4.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 614 bits (1583), Expect = 1.780e-187 Identity = 427/951 (44.90%), Postives = 518/951 (54.47%), Query Frame = 3
Query: 3666 LDGALCPFFGGSTHMLVCVDSKSRFIHVYGLRRKADTLALVKRFVADVSYIGAPACFRTDNGGEFTSKEFAAFCDNAHIRREYTAPDTPKQNAVAESAIWRVMKAGHASRMEAHRLFPASDFASIPSLGGSLDRLWMESAAWAADGFNRSATTANPGRLSPYEVFTGRAPPRTLCRFC-------SRA*CGSPAAAR-----------------------PTCNPYRVFT*TTAAITLRLPSK**RHLPVPCAYQ*RGVDGPSDVAGDAARRWGDSGATAAVPPTP------------------------------------EFTVRVQQQPSSSSSPSHRTCRRRRRRSXXXXXXXXXXXXXXXXXXXXXXXXFIHXFXXXRTFHRRGRRRFLIERTPLTHFQCFVFGAGPRS*SA*SLVFALASESGSRNWIG-----------------TRLSAA-REHAIRIGADSVGEAAQQQLPGARSRGSALMHQAKMMGQMDEQCLVTCMDTRKATDAGRRAGSGSTQQAQDIAMVTLMASRGTSTMLSPNHARRINRRIFLTIRRRTSKRPRLTRRRWRLSTDTCGWTPNVGRSSESWMRNFRTGRIATSRE-----LHSRKVGV*LEGR*VRLAHKNEVEISCARRYAKS*N*F**VVLPTVAVSSVRLLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRWYSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADRRSVSGG 6251
L G + GGS M++ VDS SR++ +YG+RRK+DTLA VK+ +AD+S G P FR DNGGEF ++F AFCDNA IRR YTAP TP+QN AESAIWRV KAGHA+R+EA RLFP DF +P G +RLW+ES WAA GFNRS T AN G SP+E+FTGR PP + F +RA P A C V + A L P + LP P G S+VA AA + + +PP+P FT ++P XXXXXXXXXXXXXX XXXX X XXX PLT G A A + G TR+ R +R G A + PG G AL H+ ++ D+ L++ + TR D GR+ S+ +D A GT T + + + R + R L D P++ + S +R +T R A S + +HS V + +E C YA PTVAVSSVRLLAA+ACEQNL LRHFDI+QAF+QS+LDEDVFM+LP GCG LSG IVKLNKSLYGL+QASRQWH HL LI LGF+QC+AD CVFRLIE+GRVV+T+VVHVDDIF++GE+ERCDQFGRDLN VPVKNLGDLRWYSG +YERD + GT+ +SQQTYAEEL E+GV++GK IPL G+KL EFD +E S+PFREL+GSLMWLATQTRPDI+NAVRAVARYCASPK IHWRA LGILGYV RTS LGITF+RG + G++++VF DADYASKAADRRSVSGG
Sbjct: 103 LCGPMTASLGGSFFMIMFVDSFSRWMKLYGMRRKSDTLAFVKKLLADMSGTGVPRSFRMDNGGEFIGRDFIAFCDNAGIRRTYTAPGTPQQNGPAESAIWRVNKAGHAARLEAPRLFPKIDFTRVPGFGRDGERLWLESCHWAAGGFNRSPTKANVGYKSPHELFTGRPPPLQIVPFLQPGYMRVTRARKMDPQAVLCCYLNNGDNHHESAVKVLKFATGRVCMTNNVVWVSDRAPLLTPPLE----LPAPA-----DEGGDSNVA--AAPFLIEYISPPLLPPSPYARPPTSPAAILSQAXXXXXXXXXXXXXXXXXXXXXPFTTTAP-----PATPLAAAXXXXXXXXXXXXXXXXXXXXXXASPPASXXXXXXXXXXXXXXXXXXXXXXXXTNMPPLTTRTIRELDVGRGDMRVSGRTRAAAKDQGXXXXXXXXXXXXXXXXXXXXXXETRVPGRLRGRRVRF---QDGGAERSTSPGGS--GDALAHRFGLVSLQDKATLLSTLTTRSIVDGGRKE-IPSSAGGRDGAEPGGREREGTKT-------EGLREEVPFACATLLASREDIDRAMRDL--DPPEVAPDLPQCYASDLRVPKTYREAVSSQHADLWIHS-----------VEKEFRGLMEADCGETYA-----------PTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGG 1000
BLAST of mRNA_P-littoralis_Contig611.4.1 vs. uniprot
Match: A0A6H5K9I1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I1_9PHAE) HSP 1 Score: 590 bits (1520), Expect = 4.160e-181 Identity = 404/938 (43.07%), Postives = 486/938 (51.81%), Query Frame = 3
Query: 3684 PFFGGSTHMLVCVDSKSRFIHVYGLRRKADTLALVKRFVADVSYIGAPACFRTDNGGEFTSKEFAAFCDNAHIRREYTAPDTPKQNAVAESAIWRVMKAGHASRMEAHRLFPASDFASIPSLGGSLDRLWMESAAWAADGFNRSATTANPGRLSPYEVFTGRAPPRTLCRFC-------SRA*CGSPAAAR-----------------------PTCNPYRVFT*TTAAITLRLPSK**RHLPVPCAYQ*RGVDGPSDVAGDAARRWGDSGATAAVPPTPEFTVRVQQQPSSSSSPSHRTCRRRRRRSXXXXXXXXXXXXXXXXXXXXXXXXFIHXFXXXRTFHRRGRRRFLIERTPLTHFQCFVFGAGPRS*SA*SLVFALASESGSRNWIGTRLSAAREHAIRIGADSVGEAAQQQLPGARSRGSALMHQAKMMGQM--------DEQCLVTCMDTRKATDAGRR---AGSGSTQQAQD------------------IAMVTLMASR-----GTSTMLSPNHARRINRRIFLTIRRRTSKRPRLTRRRWRLS--TDTCGWTPNVGRSSESWMRNFRTGRIATSRELHSRKVGV*LEGR*VRLAHKNEVEISCARRYAKS*N*F**VVLPTVAVSSVRLLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRW----------------YSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADRRSVSGG 6251
P GGS M++ VDS SR++ +YG+RRK+ TLA VK F+AD+S G P FR DNGGEF ++F AFCDNA IRR YTAP TP+QN AESAIWRV KAGHA+R+EA RLFP DF +P G +RLW+ES WAA GFNRS T AN G SP+E+FTG PP + F +RA P A C V + A L P + LP P A GDS AA F + P SP R XXXXXXXXXXXXX X XXX T TPL F + R A H ++ + D+ ++ + TR D GR+ + +G A+ A TL+ASR + P A + + +R+ S + + +W +D GW NV + R V V + C YA PTVAVSSVRLLAA+ACEQNL LRHFDI+QAF+QS+LDEDVFM+LP GCG LSG IVKLNKSLYGL+QASRQWH HL LI LGF+QC+AD CVFRLIE+GRVV+T+VVHVDDIF++GE+ERCDQFGRDLN VPVKNLGDLRW YSG +YERD + GT+ +SQQTYAEEL E+GV++GK IPL G+KL EFD +E S+PFREL+GSLMWLATQTRPDI+NAVRAVARYCASP IHWRA +GILGYV RTS LG+TF+RG + ++++VFADADYASKAADRRSVSGG
Sbjct: 3 PSLGGSFFMIMFVDSFSRWMKLYGMRRKSYTLAFVKTFLADMSVTGVPRYFRMDNGGEFIGRDFIAFCDNAGIRRTYTAPGTPQQNGPAESAIWRVNKAGHAARLEAPRLFPKIDFTRVPGFGRDGERLWLESCHWAAGGFNRSPTKANVGYKSPHELFTGSPPPLQIVPFLQPGYVRVTRARKMDPQAVLCCYLNNGDNHHESAVKVLKFATGRVCMTNNVVWVSDRAPLLTPPLE----LPAP------------------ADEGGDSNVAAAP-----FLIEYISPPLLPPSPYARP-------PTSPAAILSQAPXXXXXXXXXXXXXXXXXXXXXXT---------AXXATPLAAAPLFTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHRAACTAVRRRATFHHCRLASGLTVHHRRCTDKATFLSTLTTRSIVDGGRKEIPSSAGGRDGAEPGGREREGTKTEGLREEVPFACATLLASREDIDRAMRDLDPPEVAPDLPQCYASDLRQPES----VIKAKWVFDWKSDEYGWPTNV-------------------------------KSRLVARGDMQRVHVDCGETYA-----------PTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTLVPVKNLGDLRWXXXXXXXXXXXXXXXXYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPIEIHWRAGIGILGYVVRTSDLGVTFRRGSVARLSMEVFADADYASKAADRRSVSGG 851
BLAST of mRNA_P-littoralis_Contig611.4.1 vs. uniprot
Match: A0A6H5KKG5_9PHAE (Integrase catalytic domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG5_9PHAE) HSP 1 Score: 587 bits (1514), Expect = 3.390e-178 Identity = 425/1006 (42.25%), Postives = 519/1006 (51.59%), Query Frame = 3
Query: 3666 LDGALCPFFGGSTHMLVCVDSKSRFIHVYGLRRKADTLALVKRFVADVSYIGAPACFRTDNGGEFTSKEFAAFCDNAHIRREYTAPDTPKQNAVAESAIWRVMKAGHASRMEAHRLFPASDFASIPSLGGSLDRLWMESAAWAADGFNRSATTANPGRLSPYEVFTGRAPPRTLCRFC-------SRA*CGSPAAAR-----------------------PTCNPYRVFT*TTAAITLRLPSK**RHLPVPCAYQ*RGVDGPSDVAGDAARRWGDSGATAAVPPTP-------EFTVRVQQQPSSSSSPSHRTCRRRRRRSXXXXXXXXXXXXXXXXXXXXXXXXFIHXFXXXRTFHRRGRRRFLI------------------------------------------------------ERTPLTHFQCFVFGAGPRS*SA*SLVFALASESGSRNWIG-----------------TRLSAA-REHAIRIGADSVGEAAQQQLPGARSRGSALMHQAKMMGQMDEQCLVTCMDTRKATDAGRR---AGSGSTQQAQD------------------IAMVTLMASRGTSTMLSPNHARRINRRIFLTIRRRTSKRPRLTRRRWRLSTDTCGWTPNVGRSSESWMRNFRTGRIATSRE-----LHSRKVGV*LEGR*VRLAHKNEVEISCARRYAKS*N*F**VVLPTVAVSSVRLLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRWYSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADRRSVSGGW*-CVEGVV 6275
L G + GGS M++ VDS SR++ +YG+RRK+DTLA VK+F+AD+S G P FR DNGGEF ++F AFCDNA IRR YTAP TP+QN AESAIWRV KAGHA+R+EA RLFP DF +P G +RLW+ES WAA GFNRS T AN G SP+E+FTGR PP + F +RA P A C V + A L P + LP P G S+VA AA + + +PP+P + Q P++S+ X XXXXXXXXXXXXXXXX X XXX PLT G A A + TR+ R +R G A + PG G AL H+ ++ D+ L++ + TR D GR+ + +G A+ A TL+ASR I+R + + D P++ + S +R +T R A S + +HS V + +E C YA PTVAVSSVRLLAA+ACEQNL LRHFDI+QAF+QS+LDEDVFM+LP GCG LSG IVKLNKSLYGL+QASRQWH HL LI LGF+QC+AD CVFRLIE+GRVV+T+VVHVD IF++GE+ERCDQFGRDLN VPVKNLGDLRWYSG YERD + GT+ +SQQTYAEEL E+GV++GK IPL G+KL EFD +E S+PFR L+GSLMWLATQTRPDI+NAVRAV RYCASPK IHWRA LGILGYV RTS LGITF+RG + ++++VFADAD A KAADRRSVSGG CV G +
Sbjct: 103 LCGPMTASLGGSFFMIMFVDSFSRWMKLYGMRRKSDTLAFVKKFLADMSGTGVPRSFRMDNGGEFIGRDFIAFCDNAGIRRTYTAPGTPQQNGPAESAIWRVNKAGHAARLEAPRLFPKIDFTRVPGFGRDGERLWLESCHWAAGGFNRSPTKANVGYKSPHELFTGRPPPLQIVPFLQPGYMRVTRARKMDPQAVLCCYLNNGDNHHESAVKVLKFATGRVCMTNNVVWVSDRAPLLTPPLE----LPAPA-----DEGGDSNVA--AAPFLIEYISPPLLPPSPYARPPTSPAAILSQAPPATSTXXXXXXXXXXXXXXPPVTAXPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASPPASXXXXXXXXXXXXXXXXXXXXXXXXTNMPPLTTRTIRELDVGRADMRVSGRTRAAAKDQXXXXXXXXXXXXXXXXXXXXXXXETRVPGRLRGRRVRF---QDGGAERSTSPGGS--GDALAHRFGLVSLQDKATLLSTLTTRSIVDGGRKEIPSSAGGRDGAEPGGRERGGTKKEGLREEVPFACATLLASRED-----------IDRAM--------------------MDLDPPEVAPDLPQCYASDLRVPKTYREAVSSQHADLWIHS-----------VEKEFRGLMEADCGETYA-----------PTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDFIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCLYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRGLIGSLMWLATQTRPDIANAVRAVERYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVARLSMEVFADADCARKAADRRSVSGGLVMCVGGCI 1039
BLAST of mRNA_P-littoralis_Contig611.4.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE) HSP 1 Score: 565 bits (1456), Expect = 1.960e-168 Identity = 374/914 (40.92%), Postives = 459/914 (50.22%), Query Frame = 3
Query: 3666 LDGALCPFFGGSTHMLVCVDSKSRFIHVYGLRRKADTLALVKRFVADVSYIGAPACFRTDNGGEFTSKEFAAFCDNAHIRREYTAPDTPKQNAVAESAIWRVMKAGHASRMEAHRLFPAS-DFASIPSLGGSLDRLWMESAAWAADGFNRSATTANPGRLSPYEVFTGRAPPRTLCRFCSRA*CGSPAAARPTCNPYRVFT*-------TTAAITLRLPSK**RHLPVPCAYQ*RGVDGPSDVAGDA---------------------------ARRW---GDSGATAAVPPTPEFTVRVQQQPSSSS-SPSHRTCRRRRRRSXXXXXXXXXXXXXXXXXXXXXXXXFIHXFXXXRTFHRRGRRRFLIERTPLTHFQCFVFGAGPRS*SA*SLVFALASESGSRNWIGTRLSAAREHAIRIGADSVGEAAQQQLPGARSRGSALMHQAKMMGQMDEQCLVTCMDTRKATDAGRRA-------------GSGSTQQAQDIAMVTLMASRGTSTMLSPNHARRINRRIFLTIRRRTSKRPRLTRRRWRLSTDTCGWTPNVGRSSESWMRNFRTGRIATSRELHSRKVGV*LEGR*VRLAHKNEVEISCARRYAKS*N*F**VVLPTVAVSSVRLLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRWYSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADRRSVSGG 6251
L G GS + ++ VDS SR+ YG+R K+DTL VKRF+AD++ +G P CFR DNGGEFT F FCD A IRREYTAP+TPKQNAVAESAIWR MK GHA+R H L A D AS+P++G + RLW+ SA W + FNRSAT AN G +SP+E F GR PP + F A + R F T A+ LR + L + R P+ V G AR + + AT A PP PS S +PS LT A P + A GS+ W G A R H R D V +QQ P A G A H+ ++ MD+ L++ + TR+A GR G + A + G+ + A R + L R K P++ +R +T A R HS G ++ LACEQNL L HFDI+QAF+QS LDEDVFM+LP GCG LSG IVKL KSLYGL+QASR WH HLT L+ LGF+QCLAD CVFRL+E+GRV++ IVVHVDDIFAVG+KERCD+FG DLNE VPVKNLG+LRWYS +YERD+ERG + +SQQ +AEELA EYG++WG+S+PL +KL +FD E PFRELVGSLMWLATQTRPDI+NAVRAVA YCASPK +HW+AALGILGYV+RTS +GITF+RG + G+++QVF DADYASKA DRRSVSGG
Sbjct: 416 LTGPFTEAMDGSRYPIMFVDSASRWQRGYGMRAKSDTLKYVKRFLADMNGMGTPGCFRMDNGGEFTGAAFIEFCDAAGIRREYTAPNTPKQNAVAESAIWRAMKGGHAARR--HILSMAHVDLASVPNIGANGQRLWLSSALWTSGCFNRSATKANQGWMSPFEAFFGRKPPLNVVPFFQEGMMRVKRAIKADVQSVRCFYLHGANNHSTVTAVVLRADTGR-LALTNNFVWVNRRAAAPAPVPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARTYMYTPHAPATTAAPPASPSIFTGSSAPSPISVAPSSXXX--------------------------------------------XXXXXXXXXXXGLTPPPQPADAASPAPSHSPLTSRAFRELGGSKEWRGA---AGRVHG-RTRGDGVRFMNEQQRPPAPPDGDAAQHRLGLLAMMDKDALISSLATREAVGQGRHEPPMXXXXXXXXSFGDRGSGGAVGAGGPMVSGGGGSQHGFAAKFATREDVDAALRAERPPDK------------------VPDLPHCMAGDLREPKTFNEAM-RSPHSELWGDAVD--------------------------------------------PLACEQNLDLCHFDIQQAFVQSGLDEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVAWYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGG 1215
BLAST of mRNA_P-littoralis_Contig611.4.1 vs. uniprot
Match: A0A6H5JKY9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY9_9PHAE) HSP 1 Score: 569 bits (1467), Expect = 3.040e-168 Identity = 396/930 (42.58%), Postives = 484/930 (52.04%), Query Frame = 3
Query: 3666 LDGALCPFFGGSTHMLVCVDSKSRFIHVYGLRRKADTLALVKRFVADVSYIGAPACFRTDNGGEFTSKEFAAFCDNAHIRREYTAPDTPKQNAVAESAIWRVMKAGHASRMEAHRLFPAS-DFASIPSLGGSLDRLWMESAAWAADGFNRSATTANPGRLSPYEVFTGRAPPRTLCRFCSRA*CGSPAAARPTCNPYRVF--------T*TTAAITLRLPSK**RHLPVPCAYQ*RGVDGPSDVAGDAARR--------------------WGDSGATAAVPPTPEFTVRVQQQPSSSSSPSHRTCRRRRRRSXXXXXXXXXXXXXXXXXXXXXXXXFIHXFXXXRTFHRRGRRRFLIERTPLTHFQCFVFGAGPRS*SA*SLVFALASESGSRNWIGTRLSA-AREHAIRIGADSVGEAAQQQLPGARSRGSALMHQAKMMGQMDEQCLVTCMDTRKATDAGRRAGSGSTQQA-------QDIAMV-------TLMASRGTSTMLSPNHARRINRRIFLTIRRRTSKRPRL------------TRRRWRLSTDTCGWTPNVGRSSESWM------------RNFRTGRIATSRELHSRKVGV*LEGR*VRLAHKNEVEISCARRYAKS*N*F**VVLPTVAVSSVRLLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRWYSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADRRSVSGG 6251
+ G F GS ++++ VDS SR+ YG+R K+DTL +RF+AD++ G CFR DN GEFTS F AFCD A IRREYTAPDTPKQNAV ESAIWR MK GHA+R H L D ASIP + + RLW+ SA WA+ FNRSAT+ NP +SP+E F GR PP + F A++ R F + TA + + V + V P +G W S PPT +SPS T XXXXXX X XXX PL+H E G + TR+ R +R + QQQ P G+AL H+ ++ M + LV+ + TR+A D GRR S A QD ++V G M + A R + L +R K P L T + S + W VGR S + NF + + + + R V I +A PTV+VSSVRLLAALACEQNL L HFDI+QAF+QSEL+EDVFM+LP GCG LSG IVKL KSLYGL+QASR WH HLT L+ LGFVQCLAD CVFRL+ED V++ IVV VDDIFAVG+K RCD+FG DLN+ VPVKNLG+LRWYS +Y+RDLERG + +SQQ +AEELA EYGV+WGKS+PL +KL +FD E PFRELVGSLMWLATQTRPDI+NAVRAVARYCASPK +HW+AALGILGYV+RTS +GITF+RG + G+++QVF DADYASKAADRRSVSGG
Sbjct: 418 ITGPYSEAFDGSRYLIMFVDSASRWQRAYGMRAKSDTLTYTRRFLADLNGNGPLGCFRMDNAGEFTSAAFVAFCDAAGIRREYTAPDTPKQNAVVESAIWRAMKGGHAARR--HVLSMGHFDLASIPGMDANGHRLWLASAIWASGCFNRSATSGNPAWMSPFEAFFGRKPPLKVVPFFQEGMMRVKRASKADVQSVRCFYLHGARNHSDATAVVLRADTGRICLSNNVVWINRRTAVPAPVPASGXXXXXXXXXXXXXXXXXXXXXXXXXW-TSRTYTHTPPTAXXXXXXXXXXX-XASPSIFT-----------------GSGAPSPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPLSH--------------------RAVRELGEKE---TRVHGRTRGDRVRFMDE------QQQPPSPSGGGTALQHRLGLLSMMGKDALVSSLATREAVDQGRRDLPPSANIAPPSPPPPQDTSLVGHGSGGAXXXXGPGGLHMFAAMFATREDVEATLRAKRPPDKTPDLPHCLASDLRVPKTFKEAMRSQHSELWDDAVGRESFVLLDACPFSPVLQPVENFINAKWVFNCKADEYGWPTKFKARLVARGDMQRASIDFGELFA-----------PTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELEEDVFMRLPRGCGRLSGLIVKLYKSLYGLKQASRHWHAHLTRCLLLLGFVQCLADACVFRLMEDICVIMIIVVPVDDIFAVGQK-RCDKFGSDLNDMVPVKNLGELRWYSACFYQRDLERGLLRISQQRFAEELAAEYGVEWGKSVPLPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGISMQVFLDADYASKAADRRSVSGG 1285
BLAST of mRNA_P-littoralis_Contig611.4.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE) HSP 1 Score: 556 bits (1432), Expect = 6.050e-165 Identity = 433/1054 (41.08%), Postives = 543/1054 (51.52%), Query Frame = 3
Query: 3276 PSLNLPNLSIFEDERLMDGFDDTPRDLFF---LPPCKGVTFLVMI--VAPLPHLHLGRARF-PSVSPRGR*ILITSTFPVPTSMRPFESNGRTAGFPPHRPTASLFG-VLGGQGSAGRRG*RAWWACADCSRDCASR---------------------LDGALCPFFGGSTHMLVCVDSKSRFIHVYGLRRKADTLALVKRFVADVSY--IGAPACFRTDNGGEFTSKEFAAFCDNAHIRREYTAPDTPKQNAVAESAIWRVMKAGHASRMEAHRLFPASDFASIPSLGGSLDRLWMESAAWAADGFNRSATTANPGRLSPYEVFTGRAPPRTLCRFCSRA*CGSPAAARPTCNPYRVFT*TTAAITLRL------PSK**RHLPVPCAYQ*RGV--DGPSDVAGDAARRWGDSGATAAVPPTPEFTVRVQQQPSSSSSPSHRTCRRRRRRSXXXXXXXXXXXXXXXXXXXXXXXXFIHXFXXXRTFHRRGRRRFLIERTPLTHFQCFVFGAGPRS*SA*SLVFALASESGSRNWIGTRLSAAREHAIRIGADSVGEAAQQQLPGARSRGSALMHQAKMMGQMDEQCLVTCMDTRKATDAGRRAGSGSTQQAQD------------------------IAMVTLMASRGTSTMLSPNHARRINRRIFLTIRRRTSKRPRLTRRRWRLSTDTCGWTPNVGRSSESWMRNFRTGRIATSRELHSRKVGV*LEGR*VRLAHKNEVEISCARRYAKS*N*F**VVLPTVAVSSVRLLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRWYSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADRRSVSGG 6251
P ++L + S+ DE+LMDG+DDTP + FF +P ++ + LG A P SP + ST + F + A P R TA G VL G+ C DC + R L G L P GG+ ++ V VDS SR+ VYGLRRK+D LA KR +ADV +G CFR DNG E+T +F FCD+ I E+T P P+ N V ESAIWR+MKAG A+R A R+F DFASIPSL DRLWMESA WAAD N+SAT ANPGR SP+E+FTG P + F P R R A + L PS + V A R V + S V A G +G TAA P P FT V S + P+ XXXXXXXXXX XXXXXXXXX X XXX L+A +R G + G +LP +R+R S H ++ +D LV+ ++ R A D RR G+ +A TL+A+R I T+R +RP R P++ S +R ++ + A + E H++ S R + +L + ++LAALACE NL L HFDIEQAF++SEL+EDV+M+LP GCG+LSG IVKL KSLYGLRQASRQWH L L++LGF QC+AD CVFRLIEDG VV+ +VVHVDDIFAVGE+ERCD+FG DLN+ VPVKNLG+LRWYSG +YER+ E G +T+SQQT+ +ELA EYGV G+S+P+S+G+KL +FD +E AT FPFRELVGSLMWLATQTRPDI+NAVRAVARYCASPK +HW AA+ ILGY +RTS GI+FQRG +EG +LQ +ADAD+ASKAADRRSVSGG
Sbjct: 206 PGMDLGDTSVLTDEQLMDGYDDTPYEDFFPVFIPESDAANAAGVLDSIDGGADFDLGAAALGPGASP----FALGST-EKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEP----------CTDCMKAKGRRASVPRGPGARASKPLGRVHLDLCGPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFDV-DFASIPSLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQ------PGFMR---EDRRTKLDDQATLCYYLNGGDNHPSG---TVKVLKASTGRVVYTNNVSWVTSAPAGEGGSAGITAAPTPPP-FTPPVV---SINFGPAXXXXXXXXXXXXXXXXXXXXXAASSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------XXXXXXXXXXXXXXXXXLTAHAMRQLRPGTKAEGMT-DPRLP-SRTR-SGTRHSTGLISMLDRNTLVSMLEARSAVDKERRELGGAEAGXXXXXXXXXXXXXXXXXXXXXAGAGFPLAFATLLANRED---------------IDATLR---DQRPPEQR-------------PDLPHCQASDLRVPKSYKEAMASE------------------HRHLWSDSMQREFYG--------LLEAGTFTPAKMLAALACELNLDLCHFDIEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGG 1159
BLAST of mRNA_P-littoralis_Contig611.4.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE) HSP 1 Score: 556 bits (1433), Expect = 7.970e-161 Identity = 431/1054 (40.89%), Postives = 543/1054 (51.52%), Query Frame = 3
Query: 3276 PSLNLPNLSIFEDERLMDGFDDTPRDLFF---LPP--CKGVTFLVMIVAPLPHLHLGRARF-PSVSPRGR*ILITSTFPVPTSMRPFESNGRTAGFPPHRPTASLFG-VLGGQGSAGRRG*RAWWACADCSRDCASR---------------------LDGALCPFFGGSTHMLVCVDSKSRFIHVYGLRRKADTLALVKRFVADVSY--IGAPACFRTDNGGEFTSKEFAAFCDNAHIRREYTAPDTPKQNAVAESAIWRVMKAGHASRMEAHRLFPASDFASIPSLGGSLDRLWMESAAWAADGFNRSATTANPGRLSPYEVFTGRAPPRTLCRFCSRA*CGSPAAARPTCNPYRVFT*TTAAITLRL------PSK**RHLPVPCAYQ*RGV--DGPSDVAGDAARRWGDSGATAAVPPTPEFTVRVQQQPSSSSSPSHRTCRRRRRRSXXXXXXXXXXXXXXXXXXXXXXXXFIHXFXXXRTFHRRGRRRFLIERTPLTHFQCFVFGAGPRS*SA*SLVFALASESGSRNWIGTRLSAAREHAIRIGADSVGEAAQQQLPGARSRGSALMHQAKMMGQMDEQCLVTCMDTRKATDAGRRAGSGSTQQAQD------------------------IAMVTLMASRGTSTMLSPNHARRINRRIFLTIRRRTSKRPRLTRRRWRLSTDTCGWTPNVGRSSESWMRNFRTGRIATSRELHSRKVGV*LEGR*VRLAHKNEVEISCARRYAKS*N*F**VVLPTVAVSSVRLLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRWYSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADRRSVSGG 6251
P ++L + S+ DE+LMDG+DDTP FF +P V ++ + LG A P SP + ST + F + A P R TA G VL G+ C DC + R L G L P GG+ ++ V VDS SR+ VYGLRRK+D LA KR +ADV +G CFR DNG E+T +F FCD+ I E+T P P+ N V ESAIWR+MKAG A+R A R+F DFASIP L DRLWMESA WAAD N+SAT ANPGR SP+E+FTG P + F P R R A + L PS + V A R V + S V A G +G TAA P P FT V S + P+ XXXXXXXXXXXXXXXXX X XXX + +P L+A +R G + G +LP +R+R S H ++ +D LV+ ++ R A D RR G+ +A TL+A+R I T+R +RP R P++ S +R ++ + A + E H++ S R + +L + ++LAALACE NL L HFD+EQAF++SEL+EDV+M+LP GCG+LSG IVKL KSLYGLRQASRQWH L L++LGF QC+AD CVFRLIEDG VV+ +VVHVDDIFAVGE+ERCD+FG DLN+ VPVKNLG+LRWYSG +YER+ E G +T+SQQT+ +ELA EYGV G+S+P+S+G+KL +FD +E AT FPFRELVGSLMWLATQTRPDI+NAVRAVARYCASPK +HW AA+ ILGY +RTS GI+FQRG +EG +LQ +ADAD+ASKAADRRSVSGG
Sbjct: 712 PGMDLGDTSVLTDEQLMDGYDDTPHQDFFPVFIPESDAANVAGVLDSIDGGSDFDLGAAALGPGASP----FTLGST-EKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEP----------CTDCMKAKGRRASVPRGPGARASKPLGRVHLDLCGPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHV-DFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQ------PGFMR---EDRRTKLDDQATLCYYLNGGDNHPSG---TVKVLKASTGRVVYTNNVSWVTSAPAGEGGSAGITAAPTPPP-FTPPVV---SINFGPAXXXX--------XXXXXXXXXXXXXXXXXSASSTPAXXXXXXXXXXXXXXXXQXXSATSPSPSAXXXXXXXXXXXXXXXXXXXXXDQXXXXXXXAMPPLTAHAMRQLRPGTKAEGMT-DPRLP-SRTR-SGTRHSTGLISMLDRNTLVSMLEARSAVDKERRELGGAEAGXXXXXXXXXXXXXXXXXXXXXAGAGFPLAFATLLANRED---------------IDATLR---DQRPPEQR-------------PDLPHCQASDLRVPKSYKEAMASE------------------HRHLWSDSMQREFYG--------LLEAGTFTPAKMLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGG 1665
BLAST of mRNA_P-littoralis_Contig611.4.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE) HSP 1 Score: 551 bits (1421), Expect = 1.590e-159 Identity = 369/853 (43.26%), Postives = 456/853 (53.46%), Query Frame = 3
Query: 3747 VYGLRRKADTLALVKRFVADVSYIGAPACFRTDNGGEFTSKEFAAFCDNAHIRREYTAPDTPKQNAVAESAIWRVMKAGHASRMEAHRLFPASDFASIPSLGGSLDRLWMESAAWAADGFNRSATTANPGRLSPYEVFTGRAPPRTLCRFCSRA*CGSPAAARPTCNPYRVFT*TTAAITLRLPSK**RHLPVPCAYQ*RGVDGPSDVAGDAARRWGDSGATAAVPPTPEFTVRVQQQPSSSSSPSHRTCRRRRRRSXXXXXXXXXXXXXXXXXXXXXXXXFIHXFXXXRTFHRRGRRRFLIERTPLTHFQCFVFGAGPRS*SA*SLVFALASESGSRNWIGTRLSAAREHAIRIGADSVGEAAQQQLPGARSRGSALMHQAKMMGQMDEQCLVTCMDTRKATDAGRRAGSGSTQQAQD---IAMVTLMASRGT--STMLSPNHARRINRRIFLTIRRRTSKRPRLTRRRWRLSTDTCGWTPNVGRSS------ESWMRNFRTGRIATSRELHSRKVGV*LEGR*VRLAHKNEVEISCARRYAKS*N*F**VVLPTVAVSSVRLLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRWYSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSS-LGITFQRGRMEGVTLQVFADADYASKAADRRSVSGGW*CVEG 6269
+YG+ RK+DTLA+ K F+AD+S G P FR DNGGEF S++F AFCDNA IRR YTAP TP+QN AESAIWRV KAGHA+R+E RLFP F +P +R W+ES WAA GFNRS T AN G SP+E+FTGR PP + F A + +P V C Y G + V G T V FT V P + H T ++ T HR + T H A R +A ++ A+ S + + TR RE + G V R+R +A + + + T G G T+ ++ A TL+AS TM+ N P L + D C PN R + +SW+ + RE G+ G A + V + C YA PTV VSSVRLLAA+ACE+N LRHFDI+QAF+QS+LDE+VFM+LP GCG LSG IVKLNKSLYGL+QASRQWH HL LI LG++QCLAD VF LI++GRVV+T+VVHVDDIF++GE+ERCDQFGRDLN VP+KNLGDLRWYSG ++ERD + GT+ +SQQTYA+EL E+GV++GK IPL G K FD +E S+PFREL+GSLM LATQ RPDI+NAVRAVARYCASPK IHWRA LGILGYV RTSS LGITF+RG + ++++VFA+ADYASKAADRRSVSGG EG
Sbjct: 927 LYGMGRKSDTLAVFKEFLADMSGTGVPRSFRMDNGGEFVSRDFIAFCDNAGIRRTYTAPGTPQQNGPAESAIWRVNKAGHAARLEGRRLFPKIHFTRVPGFRRDGERHWLESCHWAAGGFNRSPTKANVGYKSPHELFTGRPPPLQIVPFLQPGYMRVMRARKM--DPQAVL----------------------CCYLNNGDNYHESVVKVLKFAMGRVCMTNNV--VVHFTASVT--PLTVRPIPHLT-------------RCHVLTGAAGNFHTTIAGGAVYRSHTIATGHRAA-----CDAT--VHHXXXXXNAARRLATAPAVAPPGAAPSTNMPPLTTRT--IRELDVGRGDMRVS---------GRTRAAAKDLTTSLPSDENPTPMAN-------TGVGGERGGTKTEGLREKVPFACDTLLASSEDIDRTMMDLNPP---------------EVAPDLPHC---YANDLC--VPNTNREAVSSEYADSWVDSVE-------REFR----GLMEAG-----AFEERVRVDCGEAYA-----------PTVPVSSVRLLAAMACERNHSLRHFDIKQAFVQSDLDENVFMRLPEGCGRLSGVIVKLNKSLYGLKQASRQWHSHLARCLICLGYIQCLADTRVFLLIQEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPMKNLGDLRWYSGFFHERDWDAGTLKISQQTYADELGMEFGVEYGKEIPLPVGSKPSGFDQDEEVVSWPFRELIGSLMSLATQIRPDIANAVRAVARYCASPKEIHWRAGLGILGYVGRTSSDLGITFRRGSVARLSMEVFAEADYASKAADRRSVSGGLVMCEG 1666
BLAST of mRNA_P-littoralis_Contig611.4.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE) HSP 1 Score: 552 bits (1422), Expect = 3.240e-159 Identity = 402/1058 (38.00%), Postives = 512/1058 (48.39%), Query Frame = 3
Query: 3276 PSLNLPNLSIFEDERLMDGFDDTPRDLFF---LPP--CKGVTFLVMIVAPLPHLHLGRARF-PSVSPRGR*ILITSTFPVPTSMRPFESNGRTAGFPPHRPTASLFG-VLGGQGSAGRRG*RAWWACADCSRDCASR---------------------LDGALCPFFGGSTHMLVCVDSKSRFIHVYGLRRKADTLALVKRFVADVSY--IGAPACFRTDNGGEFTSKEFAAFCDNAHIRREYTAPDTPKQNAVAESAIWRVMKAGHASRMEAHRLFPASDFASIPSLGGSLDRLWMESAAWAADGFNRSATTANPGRLSPYEVFTGRAPPRTLCRFCSRA*CGSPAAARPTCNPYRVFT*TTAAITLRLPSK**RHLPVPCAYQ*RGVDGPSDVA-------GDAARRWGDSGATAA-----VPPTPEFTVRVQQQPSSSSSPSHRTCRRRRRRSXXXXXXXXXXXXXXXXXXXXXXXXFIHXFXXXRTFHRRGRRRFLIERTPLTHFQCFVFGAGPRS*SA*SLVFALASESGSRNWIGTRLSAAREHAIRIGADSVGEAAQQQLPGARSRGSALMHQAKMMGQMDEQCLVTCMDTRKATDAGRRAGSGSTQQAQD------------------------IAMVTLMASRGTSTMLSPNHARRINRRIFLTIRRRTSKRPRLTRRRWRLSTDTCGWTPNVGRSSESWMRNFRTGRIATSRELHSRKVGV*LEGR*VRLAHKNEVEISCARRYAKS*N*F**VVLPTVAVSSVRLLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRWYSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADRRSVSGG 6251
P ++L + S+ DE+LMDG+DDTP FF +P V ++ + LG A P SP + ST + F + A P R TA G VL G+ C DC + R L G L P GG+ ++ V VDS SR+ VYGLRRK+D LA KR +ADV +G CFR DNG E+T +F FCD+ I E+T P P+ N V ESAIWR+MKAG A+R A R+F DFASIP L DR WMESA WAAD N+SAT ANPGR SP+E+FTG P+RV C Y G + PS G S T+A VP P T PS S++P+ + P A + A A +R G + G +LP +R+R S H ++ +D LV+ ++ R A D RR G+ +A TL+A+R I T+R +RP R P++ S +R ++ + A + E H++ S R + +L + ++LAALACE NL L HFD+EQAF++SEL+EDV+M+LP GCG+LSG IVKL KSLYGLRQASRQWH L L++LGF QC+AD CVFRLIEDG VV+ +VVHVDDIFAVGE+ERCD+FG DLN+ VPVKNLG+LRWYSG +YER+ E G +T+SQQT+ +ELA EYGV G+S+P+S+G+KL +FD +E AT FPFRELVGSLMWLATQTRPDI+NAVRAVARYCASPK +HW AA+ ILGY +RTS GI+FQRG +EG +LQ +ADAD+ASKAADRRSVSGG
Sbjct: 566 PGMDLGDTSVLTDEQLMDGYDDTPHQDFFPVFIPESDAANVAGVLDSIDGGSDFDLGAAALGPGASP----FTLGST-EKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEP----------CTDCMKAKGRRASVPRGPGARASKPLGRVHLDLCGPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRIDCFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHV-DFASIPGLDERGDRPWMESAKWAADALNQSATKANPGRRSPHEMFTGEQ------------------------GPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVTVLKASTGRVVYTNNVSWVTSAPAGEGVPRPPSATS-----PSPSATPAPGNX--------------------------------------------------XXXXXXXXXXXXXXYQXPPPXDPAMPPLTAHAMRQ-----------------LRPGTKAEGMT-DPRLP-SRTR-SGTRHSTGLISMLDRNTLVSMLEARSAVDKERRELGGAEAGXXXXXXXXXXXXXXXXXXXXXAGAGFPLAFATLLANRED---------------IDATLR---DQRPPEQR-------------PDLPHCQASDLRVPKSYKEAMASE------------------HRHLWSDSMQREFYG--------LLEAGTFTPAKMLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGG 1451
BLAST of mRNA_P-littoralis_Contig611.4.1 vs. uniprot
Match: A0A6H5KSN7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSN7_9PHAE) HSP 1 Score: 553 bits (1424), Expect = 3.470e-157 Identity = 377/892 (42.26%), Postives = 445/892 (49.89%), Query Frame = 3
Query: 3666 LDGALCPFFGGSTHMLVCVDSKSRFIHVYGLRRKADTLALVKRFVADVSYIGAPACFRTDNGGEFTSKEFAAFCDNAHIRREYTAPDTPKQNAVAESAIWRVMKAGHASRMEAHRLFPASDFASIPSLGGSLDRLWMESAAWAADGFNRSATTANPGRLSPYEVFTGRAPPRTLCRFC-------SRA*CGSPAAAR-----------------------PTCNPYRVFT*TTAAITLRLPSK**RHLPVPCAYQ*RGVDGPSDVAGDAARRWGDSGATAAVPPTPEFTVRVQQQPSSSSSPSHRTCRRRRRRSXXXXXXXXXXXXXXXXXXXXXXXXFIHXFXXXRTFHRRGRRRFLIERTPLTHFQCFVFGAGPRS*SA*SLVFALASESGSRNWIGTRLSAAREHAIRIGADSVGEAAQQQLPGARSRGSALMHQAKMMGQMDEQCLVTCMDTRKATDAGRRAGSGSTQQAQDIAMVTLMASRGTSTMLSPNHARRINRRIFLTIRRRTSKRPRLTRRRWRLSTDTCGWTPNVGRSSESWMRNFRTGRIATSRELHSRKVGV*LEGR*VRLAHKNEVEISCARRYAKS*N*F**VVLPTVAVSSVRLLAALACEQNLGLRHFDIEQAFIQSELDEDVFMKLPPGCGSLSGKIVKLNKSLYGLRQASRQWHGHLTERLISLGFVQCLADPCVFRLIEDGRVVITIVVHVDDIFAVGEKERCDQFGRDLNEKVPVKNLGDLRWYSGLYYERDLERGTITVSQQTYAEELAEEYGVKWGKSIPLSAGMKLEEFDVEEPATSFPFRELVGSLMWLATQTRPDISNAVRAVARYCASPKSIHWRAALGILGYVKRTSSLGITFQRGRMEGVTLQVFADADYASKAADRRSVSGG 6251
L G + GGS M++ VDS SR++ +YG+RRK+DTLA VK+F+AD+S G P FR DNGGEF ++F AFCDNA IRR YTAP TP+QN AESAIWRV KAGHA+R+EA RLFP DF +P G +RLW+ES WAA GFNRS T AN G SP+E+FTGR PP + F +RA P A C V + A L P + +P P G G SDVA A P F +R P++S+ P X X XXXXXXX X XXX P ++ A N T RT + + R +S T + G +V + GR V + C YA PTVAVSSVRLLAA+ACEQ L +RHFDI+QAF+QS LDEDVFM LP GCG LSG IVKLNKSLYGL+Q SRQWH HL LI LGF+QCLAD CVFRLIE+GRVV T+VVHVDDI ++GE+ERCDQFGRDLN VPVKN GDLRWYSG YERD + GT+ +SQQTYAEEL ++GV++GK IPL G+KL EFD +E S+PFREL+GSLMWLATQ RPDI+NAV+AVARYCASPK IHWRA LGILGYV R S LGITF+RG + G+ ++V ADAD ASKAADRRSVSGG
Sbjct: 746 LCGPMTASLGGSFFMIMFVDSFSRWMKLYGMRRKSDTLAFVKKFLADMSGTGVPRSFRMDNGGEFIGRDFIAFCDNAGIRRTYTAPGTPQQNGPAESAIWRVNKAGHAARLEAPRLFPKIDFTRVPGFGRDGERLWLESCHWAAGGFNRSPTKANVGYKSPHELFTGRPPPLQIVPFLQPGYMRVTRARKMDPQAVLCCYLNNGDNHHESVVKVLKFATGRVCMTNNVVWVSDRAPLLTPPLE----MPAPA-----GEGGDSDVA--------------AAP----FLIRAP--PATSTPPXXXXXXXXXXXXXPFTTTAPXATPLAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASPPASXXXXXXXXXXXXXXXXXXXXXXXXTNMPPLTT---RTIRELDVGRGDMMVSGRTRAAAKDQGXXXXXXXXXXXXXXXXXXXXXXETRVPGKMRGR-------GRVHVDCGETYA-----------PTVAVSSVRLLAAMACEQKLSVRHFDIKQAFVQSNLDEDVFMCLPEGCGRLSGMIVKLNKSLYGLKQVSRQWHSHLARCLICLGFIQCLADTCVFRLIEEGRVVATLVVHVDDILSIGEEERCDQFGRDLNTMVPVKNRGDLRWYSGCLYERDWDAGTLKISQQTYAEELGMKFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQMRPDIANAVKAVARYCASPKEIHWRAGLGILGYVVRASDLGITFRRGSVAGLGMEVSADADDASKAADRRSVSGG 1566 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig611.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig611.4.1 >prot_P-littoralis_Contig611.4.1 ID=prot_P-littoralis_Contig611.4.1|Name=mRNA_P-littoralis_Contig611.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=653bp MDSNYDRYMTSLTTEEREAATEDHRAHMAAAMRWSEEQGREQGREQERLRback to top mRNA from alignment at P-littoralis_Contig611:15409..22960+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig611.4.1 ID=mRNA_P-littoralis_Contig611.4.1|Name=mRNA_P-littoralis_Contig611.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7552bp|location=Sequence derived from alignment at P-littoralis_Contig611:15409..22960+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig611:15409..22960+ >mRNA_P-littoralis_Contig611.4.1 ID=mRNA_P-littoralis_Contig611.4.1|Name=mRNA_P-littoralis_Contig611.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1959bp|location=Sequence derived from alignment at P-littoralis_Contig611:15409..22960+ (Pylaiella littoralis U1_48)back to top |