mRNA_P-littoralis_Contig116.37.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig116.37.2
Unique NamemRNA_P-littoralis_Contig116.37.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig116.37.2 vs. uniprot
Match: A0A6H5L290_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L290_9PHAE)

HSP 1 Score: 342 bits (877), Expect = 1.300e-111
Identity = 192/269 (71.38%), Postives = 213/269 (79.18%), Query Frame = 3 
Query:  141 RDRPAMSAELS-FSRGQLLRVIPAAVGAVLLGTAR-TKPVTAALPTSEDYEFGTGSKKQQNRAXXXXXXXXXXPREDSTDACPNCSLSERRKRAASSSEATTDPISPEQTKRPEVQDELAIPLPKSSVNPSSPVEVVKAVSGELDRMQALVNKERWGDALTRLRSYPLTTLKSPTLGMGSVGDVARALGVSTSKASDILEASMEAGLTLREVEDVVFSNTRTLEFFNSADYKQVEDLAKNRQPTDLTEPLQLLSDTKKLVEGVVDMMGA 941
            R +PAM+ +    SR Q+LR +P  VG     +A   +P  AALPT+EDY FGTGSK     +            ++S DACP+CSLSERRKRAASSS   +   SP + KRPEVQD+L+ PLPKSSVNP +PVEVV+AVSGELDRMQ LVNKERWGDALTRLRSYPLT LKSPTLGM SVGDVARALGVS SKASDILEASMEAGLTLR+VEDVVFSNTRTLEFFNSADYKQVEDLAK+R PTDLTEPLQLLSDTKKLV GV D+MGA
Sbjct:   37 RSQPAMTVDSPPLSRAQMLRAVPVLVGVAAFHSATPAEPARAALPTTEDYAFGTGSKTSARTSASTQG-------QESKDACPDCSLSERRKRAASSSAVQS---SPSKVKRPEVQDDLSAPLPKSSVNPDNPVEVVRAVSGELDRMQTLVNKERWGDALTRLRSYPLTALKSPTLGMKSVGDVARALGVSNSKASDILEASMEAGLTLRQVEDVVFSNTRTLEFFNSADYKQVEDLAKDRTPTDLTEPLQLLSDTKKLVRGVADLMGA 295
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BLAST of mRNA_P-littoralis_Contig116.37.2 vs. uniprot
Match: D7FWN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWN3_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 2.640e-94
Identity = 177/288 (61.46%), Postives = 191/288 (66.32%), Query Frame = 3 
Query:  105 PLQLQQTGVTATRD-------RPAMSAELS-FSRGQLLRVIPAAVGAVLLGTART-KPVTAALPTSEDYEFGTGSKKQQNRAXXXXXXXXXXPREDSTDACPNCSLSERRKRAASSSEATTDPISPEQTKRPEVQDELAIPLPKSSVNPSSPVEVVKAVSGELDRMQALVNKERWGDALTRLRSYPLTTLKSPTLGMGSVGDVARALGVSTSKASDILEASMEAGLTLREVEDVVFSNTRTLEFFNSADYKQVEDLAKNRQPTDLTEPLQLLSDTKKLVEGVVDMMGA 941
            P  +Q+ G  A R        +PAM+ +    SR QLLR  PA VG     +A   +P  AALPT+EDY FGTGSK                                                     KRPEVQDEL+ PLPKSSVNP +PVEVV+AVSGELDRMQ LV KERWGDALTRLRSYPLT LKSPTLGM SVGDV+RALGVS SKASDILEASMEAGLTLREVEDVVFSNTRTLEFFNSADYKQVEDLAK+R PTDLTEPLQLLSDTKKLV GV D+MGA
Sbjct:   40 PFSVQRVGAFAVRSCARCKRSQPAMTVDSPPLSRAQLLRAFPALVGVAAFHSATAAEPARAALPTTEDYAFGTGSK----------------------------------------------------VKRPEVQDELSAPLPKSSVNPDNPVEVVRAVSGELDRMQTLVKKERWGDALTRLRSYPLTALKSPTLGMKSVGDVSRALGVSNSKASDILEASMEAGLTLREVEDVVFSNTRTLEFFNSADYKQVEDLAKDRTPTDLTEPLQLLSDTKKLVGGVADLMGA 275
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig116.37.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L290_9PHAE1.300e-11171.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWN3_ECTSI2.640e-9461.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig116contigP-littoralis_Contig116:149416..153740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWN3
Model size1565
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons7
Evalue5.31e-98
EggNOG OGs2EYYH@1|root,2T0D1@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_001300.1
Cds size948
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig116.37.2prot_P-littoralis_Contig116.37.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig116 149436..153143 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789479.413964-UTR-P-littoralis_Contig116:149415..1494351680789479.413964-UTR-P-littoralis_Contig116:149415..149435Pylaiella littoralis U1_48UTRP-littoralis_Contig116 149416..149435 +
1680789479.4989347-UTR-P-littoralis_Contig116:153143..1537401680789479.4989347-UTR-P-littoralis_Contig116:153143..153740Pylaiella littoralis U1_48UTRP-littoralis_Contig116 153144..153740 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789479.4259574-CDS-P-littoralis_Contig116:149435..1497201680789479.4259574-CDS-P-littoralis_Contig116:149435..149720Pylaiella littoralis U1_48CDSP-littoralis_Contig116 149436..149720 +
1680789479.4346442-CDS-P-littoralis_Contig116:150081..1502371680789479.4346442-CDS-P-littoralis_Contig116:150081..150237Pylaiella littoralis U1_48CDSP-littoralis_Contig116 150082..150237 +
1680789479.4437165-CDS-P-littoralis_Contig116:150580..1506131680789479.4437165-CDS-P-littoralis_Contig116:150580..150613Pylaiella littoralis U1_48CDSP-littoralis_Contig116 150581..150613 +
1680789479.454509-CDS-P-littoralis_Contig116:150937..1510391680789479.454509-CDS-P-littoralis_Contig116:150937..151039Pylaiella littoralis U1_48CDSP-littoralis_Contig116 150938..151039 +
1680789479.4681976-CDS-P-littoralis_Contig116:151482..1516021680789479.4681976-CDS-P-littoralis_Contig116:151482..151602Pylaiella littoralis U1_48CDSP-littoralis_Contig116 151483..151602 +
1680789479.480968-CDS-P-littoralis_Contig116:152142..1522591680789479.480968-CDS-P-littoralis_Contig116:152142..152259Pylaiella littoralis U1_48CDSP-littoralis_Contig116 152143..152259 +
1680789479.4890435-CDS-P-littoralis_Contig116:153008..1531431680789479.4890435-CDS-P-littoralis_Contig116:153008..153143Pylaiella littoralis U1_48CDSP-littoralis_Contig116 153009..153143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig116.37.2

>prot_P-littoralis_Contig116.37.2 ID=prot_P-littoralis_Contig116.37.2|Name=mRNA_P-littoralis_Contig116.37.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=316bp
MTSMAFYSVFAACIVTMHCCVMAFVPAVPLQLQQTGVTATRDRPAMSAEL
SFSRGQLLRVIPAAVGAVLLGTARTKPVTAALPTSEDYEFGTGSKKQQNR
ASTSTTTTATTPREDSTDACPNCSLSERRKRAASSSEATTDPISPEQTKR
PEVQDELAIPLPKSSVNPSSPVEVVKAVSGELDRMQALVNKERWGDALTR
LRSYPLTTLKSPTLGMGSVGDVARALGVSTSKASDILEASMEAGLTLREV
EDVVFSNTRTLEFFNSADYKQVEDLAKNRQPTDLTEPLQLLSDTKKLVEG
VVDMMGARSGGVVAQ*
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mRNA from alignment at P-littoralis_Contig116:149416..153740+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig116.37.2 ID=mRNA_P-littoralis_Contig116.37.2|Name=mRNA_P-littoralis_Contig116.37.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4325bp|location=Sequence derived from alignment at P-littoralis_Contig116:149416..153740+ (Pylaiella littoralis U1_48)
AGAGTAAGAAAATTGTCGGCATGACTAGTATGGCCTTCTATTCGGTCTTT
GCTGCATGCATTGTCACTATGCATTGTTGTGTCATGGCCTTCGTTCCGGC
AGTGCCTCTACAGCTACAGCAGACGGGTGTCACAGCAACAAGAGATCGGC
CAGCAATGTCGGCGGAGTTGTCCTTCAGTCGAGGGCAGCTGCTGAGAGTC
ATCCCTGCAGCCGTTGGCGCTGTACTCCTAGGTACTGCCCGTACGAAGCC
GGTGACGGCTGCTCTCCCTACTTCAGAGGACTATGAATTTGGAACCGGCT
CAAAGGTGTGGATTTCGTGGATACGTCACGTCAAATGTAAAACTCGTGCG
TAATTGACGTGGATCTAACTGATCGGACGCCGTTCTGATGCGGGGGGCCA
TTATCCGTGTTATGGATGCGGGCTAATACGGTATACCTGATGCTCGTACT
GTTCTAGAGGTGTGTAAAACCGCGCAGACACAGGAGGATCGATGGTGCGT
CGCCAATGATATCAAAACACAATGGTGTGTAGCAGTAATCAAGCACGTTA
TCTTTCAACTCTCCTTTGTGATTTGTCGCACATCCCTCCGCCCTCTTCCT
GTCGTTTTTTTTTCTTTTCTGATCGATCCCAGCTCCCTCACCGACAACCC
ACATGACATTTACCAGAAACAACAAAACCGAGCAAGCACCTCCACAACAA
CAACAGCAACAACACCACGAGAAGACTCTACGGATGCTTGTCCGAATTGT
TCCTTGTCTGAAAGGAGAAAAAGGGCAGCATCATCGTCTGAAGCAACAAC
AGACCCTATTAGTCCGGAACAGGTAGAACACTGACGCATGGTGTCACTAC
TGTAAGCGGTTGCTGTTTTTCAGCTGACCTCCAAGTCAACTCTTGTAACT
TGAACGACGAAAGTCAAAGAAGAAGCTCTGTGAGAAAGTGCGTAGAGCTG
GCGCCGCAGAGGAACCCACTCTCTATTATAGTTTTCATCCGTGGGAAATA
CGTCATTGTATGATACTCCAAATATGTAGACAATGTATTTATTCTTACGT
GCGCATCGGCTCTGTCGCACGTATTCCTTGCAATCCCCTCAAGAAATGTG
CCTCATGTTCTGTACATTCTTCGCTACGTTCTGTTATCTGTGTTGCTCGG
CGGTGGAACCCTCAGACCAAGAGACCCGAGGTGCAAGACGAGTTGGCGGT
GAGACGTTGCTCCTGCTGGCTCACATTGAATAATACTTCGAAGTATTCAG
TATGAATCACTCAACTCCCTATCAGGGTGCATCTGTTTTTGGCCATTGCC
CTCTTAACAAAAAGCGAAGGTCATGTAGCAGATTCCCAGCAGCAGGGACT
CTTGTCGCCACGCGTTCACCCACTCTCAGATGTTGGAGTTCAGGTGTGAG
TTATTCATCGTTCTTGAAGGTGGTATCTGGAACTGCTGCTGCCTTGATAA
AACGTGAGGAATCCACCCCAGGCGCCCATTTTTTCCGTGCCCGTGCTCAC
GCGTGGTCGTGAAAAAAATCAGATTCCGCTTCCGAAGTCATCGGTGAATC
CTAGCAGCCCGGTGGAGGTTGTGAAAGCGGTGTCTGGAGAACTGGACCGC
ATGCAGGCGCTTGTCAACAAAGAGGTCGGTTGCAGGTTACGTTGTTTTCT
TTGTTGCCTTCACCCACAAGCATGACCAGTAGCAATGTGGAAGAGGCGTA
CGGGTATCGGGTGTACCACTGTCGTACAATGTTGAGCAAACGTCAAAGAG
GAAAATTAGGAGAATCGACGCAGGGCAAACACACGACGCACTCCTCATTC
TTGGAAACGAGAAGACGGACCGGTTGCAAATCTATACGTATTCATTTTGT
TTGTGCCTTTTTTTCACCCCTGCCTGCACCAAGGAATTGAGCTCGTCGCC
GTGAAACAATAGAGTTTTCTGCGCGTATTTCGTTCTGGAATGTCCGCCAC
TGACTCCCTCTTCGCTGCACTTCTCGCGTTTTCGAACCATTGGTCACATG
TTCTGCTTCTGGGCGACACCTGGACAATCTCGGATGTTGAATGAACTCTC
GTGTATGAACGGAGCAGCGTTGGGGGGACGCGCTGACGCGACTGAGAAGT
TACCCTTTGACGACCCTCAAGAGCCCAACGTTGGGCATGGGATCAGTGGG
CGATGTGGCCCGCGCCCTCGGAGTGAGCACTTCCAAGGTTAGCCACTTCA
TTCTATGATATAATGGTATTGCACTTGGAGATTTTCAGCCGCTTCATACT
CCATTTTTTGGATAAAACCCGTAACAAGCACAAACTTGTTATGTTTGAAT
ATTTTCGAGTTCAAAGTGTCCGAAACGCACCAGTCTGTGCAGTTCTGAGG
AGCCAACACGCTCGACCGTCCTCCTAATGGTGGTCTGCTCCTTTCAGGGC
TAAGCCAAAAGCCATCTGCATGATGTGCACCTGGCTCGTAGGTCTCGCTT
ACTCACGACCGTACGGCAAAACTTTGCTGCACCGGCCGTCTAGAACTTCT
TTCTTCTTTAGCGGTCTGACTGAGAAACGGACGTCAGCGGAGATAGAAGA
GAGCAAGGCCGGCGGGAGGCGTGCCTAGATCGACAATACGATCTTTGAAA
CGTCAGGAGTTGATGTCGTACCCTAGCTCCTTCCGGGGCCGATTCGCCGT
GGTTGAATAAAATGTTGACGTTTATGGTGGATGATGTGGTGTATTGCGTT
TTTTTCCCGATTGGTCGAACTCACCAGGCTTCTGATATTCTGGAAGCGAG
CATGGAGGCGGGGTTGACGCTAAGGGAGGTGGAGGACGTGGTTTTCAGCA
ACACACGAACGCTCGAGTTTTTCAACAGTGCTGACTATAAGCAGGTGAAG
TGAGGTGTCATATAACGGGGCACGGCAATCGACCTTGTCTGAGACGATGG
GGAATTCATACGAATATGTGGCCCCCACCACACGCTTTTTCATGGACTGA
CATGGTCCATACTTGAAGTGTAACCCGATAGAATCCCACCATGGCCACAT
TGGTGACACAGCAATGTACGAGGTGTCCCAATACGAGCAACGCGAGCAGC
GATAATTATCTCTTAAGAGTGCTGCCTTTTTGACGATTAAAGGAGGTGCT
TTTCGGCCACGCGCAAGGTGCATGTGGTAAGTCGACCTCTCGTCTACAGA
GTGCGCGCCGTTGTGGTTGCATCACAAAGGGTATTATTCGCACCTCTTCT
GCCCAGATTTCCCTGAAAGGCATGGCAGATCATCTGTCTGTTGTTGTGCG
AATCGGCTTCCGCTTTGGCTACTTACACCCACGATACTCGTGTCACAAAT
AAGGGCGTTTGCCTACTGTAAGATAATAGGCTACCGGCAATTCTTAACGG
TCGGTTACCATGAAAGTGCCATACACAAAGTCTAATGCACGCAGGCTTGG
GCGTTTCAGCTCCAAAACCTGTCGCCTCGCTGTTGAGGCATGCCGCCCTT
ATGGTGGTTTTCATGTACCGCGAACGAAACCTGTCGGTCGCGTGTCCGTC
ACCGCTGTGGGCCTTCTCAATCAATCCACCGTTCCCATTTTGGATCGTGT
TTGTTTTTCGACCGCGTTGGAAATGCTCAAACAATGGTAACAGGTGGAAG
ATTTGGCCAAGAACCGCCAGCCGACGGACCTGACGGAGCCACTGCAACTG
CTTTCGGACACCAAGAAGTTGGTGGAAGGAGTTGTAGACATGATGGGGGC
GAGGTCTGGCGGCGTTGTTGCACAATGAACCGGGTCAGCCGCCACTTCAT
CTCTCTCTTTTCCTGCGTTAGTTTCCCAAAACATTTCCGTGAGGTGGAGT
CGAGGGGCGCTCGCGCAGTGCTTGTCCCTCGAATAATCTCTGTAATAAAC
GGGGAAGTCGTAAGACTACCAGGTATACTTGATGAGGGAAAAAAGGAGGA
TTTCCGGCGATGTTGCCGTCACCTGCTTGCAAAGAGTTCGGCGTCTCTTG
AAGTAGTATGTTGCTCAGCACCCACGGGGTTGCTAATTGTTTCGGGATGC
AGTGCCAGGTAGATCGCAGTATAGAGGCGTTTAGTGTGACGGCAAGGAGT
TCTAGTTGCTTTGCTTCTTCGAGGAAATTTGAACCTGAAATACAAGAAAG
ACGGGCCTCGCAGCGATGTATTTCCTCGCGTCTTTCGATGCGGATTTCGT
TTGGTGATGGCTGTGTGCTACTGCACTGCTTCACTTTTGGAAGCCGATCG
ACTAGTGCTGAACGACGGATCTTCTCCCCTACAACGAGCTGACAACTACA
ACACTGGCCCGGCCAAATATTTGGCTAGTGTATCTGGACGTTTGAACAGT
GAAGCCTTGCCGGGTTGAGGAGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig116:149416..153740+

>mRNA_P-littoralis_Contig116.37.2 ID=mRNA_P-littoralis_Contig116.37.2|Name=mRNA_P-littoralis_Contig116.37.2|organism=Pylaiella littoralis U1_48|type=CDS|length=948bp|location=Sequence derived from alignment at P-littoralis_Contig116:149416..153740+ (Pylaiella littoralis U1_48)
ATGACTAGTATGGCCTTCTATTCGGTCTTTGCTGCATGCATTGTCACTAT
GCATTGTTGTGTCATGGCCTTCGTTCCGGCAGTGCCTCTACAGCTACAGC
AGACGGGTGTCACAGCAACAAGAGATCGGCCAGCAATGTCGGCGGAGTTG
TCCTTCAGTCGAGGGCAGCTGCTGAGAGTCATCCCTGCAGCCGTTGGCGC
TGTACTCCTAGGTACTGCCCGTACGAAGCCGGTGACGGCTGCTCTCCCTA
CTTCAGAGGACTATGAATTTGGAACCGGCTCAAAGAAACAACAAAACCGA
GCAAGCACCTCCACAACAACAACAGCAACAACACCACGAGAAGACTCTAC
GGATGCTTGTCCGAATTGTTCCTTGTCTGAAAGGAGAAAAAGGGCAGCAT
CATCGTCTGAAGCAACAACAGACCCTATTAGTCCGGAACAGACCAAGAGA
CCCGAGGTGCAAGACGAGTTGGCGATTCCGCTTCCGAAGTCATCGGTGAA
TCCTAGCAGCCCGGTGGAGGTTGTGAAAGCGGTGTCTGGAGAACTGGACC
GCATGCAGGCGCTTGTCAACAAAGAGCGTTGGGGGGACGCGCTGACGCGA
CTGAGAAGTTACCCTTTGACGACCCTCAAGAGCCCAACGTTGGGCATGGG
ATCAGTGGGCGATGTGGCCCGCGCCCTCGGAGTGAGCACTTCCAAGGCTT
CTGATATTCTGGAAGCGAGCATGGAGGCGGGGTTGACGCTAAGGGAGGTG
GAGGACGTGGTTTTCAGCAACACACGAACGCTCGAGTTTTTCAACAGTGC
TGACTATAAGCAGGTGGAAGATTTGGCCAAGAACCGCCAGCCGACGGACC
TGACGGAGCCACTGCAACTGCTTTCGGACACCAAGAAGTTGGTGGAAGGA
GTTGTAGACATGATGGGGGCGAGGTCTGGCGGCGTTGTTGCACAATGA
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