prot_P-littoralis_Contig116.31.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig116.31.2
Unique Nameprot_P-littoralis_Contig116.31.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length373
Homology
BLAST of mRNA_P-littoralis_Contig116.31.2 vs. uniprot
Match: A0A6H5KMP8_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMP8_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 2.790e-59
Identity = 206/340 (60.59%), Postives = 228/340 (67.06%), Query Frame = 0
Query:   30 MSQPPTMSQLLKRAGLAKRPRLGQQ----------QSKTKRSTATAAVDGXXXXXXXXXXXXXXXXXEVEGRGLGAISDATGILAVDDQIAALERELEDGGDSSSSGSDXXXXXXXXXXXADGDRSDQDRKRRPLLKFASPLEAEKIEPLPSHLLPRPGCGMQKASSKKKKPKKTGGPKVEGKPDVAATPGPSRGLDSAVKELMANYEARSSERVPFYCRVCQFQGDSLEALERHKQGELHQEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLERVQATMSRQGKWVPGGRGGRGXXXXXXRSEESTD-FCSRDNDGGSSERSGMRGRGWASGRGR 358
            M +PPTMSQLLKRAGLAKR R   +          QS  KR      VDGXXXXXXXXXXXXXXXXX       GA +     + VDDQIAALEREL+ G D SSS ++     XXXXXX          + R   K  SPLEAEKIEPLP+HLLPRPGCG+ K + KKKKP    G          A PGPS+GLDSAVKEL+ANYEARSSERVPFYCRVC+FQGDSLEALE+HK+  LH   XXXXXXXXXXXXXXXXXXXXXXXXXXXX    LE++Q+ MSRQGKWVPGGRGG G       SE S + +  R+N G     SG RG GWA GRGR
Sbjct:    1 MFRPPTMSQLLKRAGLAKRSRPAGRGVDATPSPANQSNNKRQR----VDGXXXXXXXXXXXXXXXXXXXSRSENGASAKD---VTVDDQIAALERELK-GADVSSSDAESSISSXXXXXXXXXXXXXXXERGR-ATKLVSPLEAEKIEPLPAHLLPRPGCGVHKDNKKKKKPSAAVG--------TTALPGPSQGLDSAVKELLANYEARSSERVPFYCRVCKFQGDSLEALEKHKEEPLHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKAHLEKLQSMMSRQGKWVPGGRGGPG-------SEGSLNGYSGRENGGDCWRGSGARG-GWAVGRGR 315          
BLAST of mRNA_P-littoralis_Contig116.31.2 vs. uniprot
Match: D7FWN0_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWN0_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 2.230e-58
Identity = 209/340 (61.47%), Postives = 228/340 (67.06%), Query Frame = 0
Query:   30 MSQPPTMSQLLKRAGLAKRPRLGQQ----------QSKTKRSTATAAVDGXXXXXXXXXXXXXXXXXEVEGRGLGAISDATGILAVDDQIAALERELEDGGDSSSSGSDXXXXXXXXXXXADGDRSDQDRKRRPLLKFASPLEAEKIEPLPSHLLPRPGCGMQKASSKKKKPKKTGGPKVEGKPDVAATPGPSRGLDSAVKELMANYEARSSERVPFYCRVCQFQGDSLEALERHKQGELHQEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLERVQATMSRQGKWVPGGRGGRGXXXXXXRSEESTD-FCSRDNDGGSSERSGMRGRGWASGRGR 358
            MS PPTMSQLLKRAGLAKRPR   +          QSK KR         XXXXXXXXXXXXXXXXX     G  A       +AVDDQIAALEREL+   DSSS   D  XXXXXXXXX         R+R  + K  SPLE EKIEPLP+HLLPRPGCG+ K        KK             A PGPS+GLDSAVKEL+ANYEARSSERVPFYCRVC+FQGDSLEALE+HK+  LH   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLE++Q+TMSRQGKWVPGG GG G       SE S + +  R+N GG     G   RGWA+GRGR
Sbjct:    1 MSGPPTMSQLLKRAGLAKRPRPAGRGVDATPSTASQSKRKRPRVDXXXXXXXXXXXXXXXXXXXXXXGRSENGTSAKD-----VAVDDQIAALERELKGANDSSS---DAEXXXXXXXXXXXXXXRGAGRERGRVAKLVSPLEVEKIEPLPAHLLPRPGCGVHKD-------KKXXXXXPSAAVGTTALPGPSQGLDSAVKELLANYEARSSERVPFYCRVCKFQGDSLEALEKHKEEPLHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEKLQSTMSRQGKWVPGGWGGPG-------SERSANGYSGRENGGGRWR--GSDARGWAAGRGR 316          
BLAST of mRNA_P-littoralis_Contig116.31.2 vs. uniprot
Match: A0A835Z659_9STRA (C2H2-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z659_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.380e-12
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = 0
Query:  214 GLDSAVKELMANYEARSSERVPFYCRVCQFQGDSLEALERHKQGELHQE 262
            GL+ AV EL+ANYEA+S+ER+P+YCRVC+FQG S+E L  H+Q +LH E
Sbjct:    2 GLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLHTE 50          
BLAST of mRNA_P-littoralis_Contig116.31.2 vs. uniprot
Match: A0A4D9D0V7_9STRA (C2H2-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0V7_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.790e-11
Identity = 49/127 (38.58%), Postives = 63/127 (49.61%), Query Frame = 0
Query:  166 IEPLPSHLLPRPGC-----------------GMQKASSKKKK------PKKTGGPKVEGKPDVAATP--------GPSRGLDSAVKELMANYEARSSERVPFYCRVCQFQGDSLEALERHKQGELHQ 261
            I PLP HLLP P C                 G +K  ++K+K       +  GG +  G P  +  P            GL   V EL++NY+  SSER PFYCR+C+FQG SLE L  HK+GELH+
Sbjct:   89 IPPLPPHLLPLPECKGKGGSRVPLPASDGRSGRRKRLTRKEKIASDRMQEGNGGAQRPGDPAGSLPPLQASSSASSAGAGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHR 215          
BLAST of mRNA_P-littoralis_Contig116.31.2 vs. uniprot
Match: I2CRP9_NANGC (C2h2 zinc finger protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRP9_NANGC)

HSP 1 Score: 69.3 bits (168), Expect = 3.050e-11
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 0
Query:  214 GLDSAVKELMANYEARSSERVPFYCRVCQFQGDSLEALERHKQGELHQ 261
            GL   V EL++NY+  SSER PFYCR+C+FQG SLE L  HK+GELH+
Sbjct:    2 GLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHR 49          
BLAST of mRNA_P-littoralis_Contig116.31.2 vs. uniprot
Match: W7TIZ9_9STRA (C2h2 zinc finger n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIZ9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.050e-10
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 0
Query:  214 GLDSAVKELMANYEARSSERVPFYCRVCQFQGDSLEALERHKQGELHQ 261
            GL   V EL++NY+  SSER PFYCR+C+FQG SLE L  HK+GELH+
Sbjct:   33 GLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHR 80          
BLAST of mRNA_P-littoralis_Contig116.31.2 vs. uniprot
Match: B7FRV3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FRV3_PHATC)

HSP 1 Score: 62.8 bits (151), Expect = 1.570e-7
Identity = 49/159 (30.82%), Postives = 75/159 (47.17%), Query Frame = 0
Query:  105 VDDQIAALERELEDGGDSSSSGSDXXXXXXXXXXXADGDRSDQDRKRRPLLKFASPLEAEKIEPLPSHLLPRPGCGMQKASSKKKKPKKTGGPKVEGKPDVAATPGPSRGLDSAVKELMANYEARSSERVPFYCRVCQFQGDSLEALERHKQGELHQEA 263
            +D++I  LE EL +  D     S             + +   +D  R  +L  +S ++ ++IEPLPS+LLP       K   +    ++    +   K         S GL++AVKE++  Y  RSSER+PFYCRVC  Q    ++   HK+ E H  A
Sbjct:   49 IDEEIRRLEAELANESDEDEHDSSD----------VETNSETEDDSRGTVLCLSS-VQKDRIEPLPSNLLPSNRKRSLKGIDRVNASERDDADQSNKKKSKLV----SSGLEAAVKEVLDGYVPRSSERLPFYCRVCAQQMSDEDSFTAHKETEFHTTA 192          
BLAST of mRNA_P-littoralis_Contig116.31.2 vs. uniprot
Match: A0A1E7F3F2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F3F2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.310e-5
Identity = 37/100 (37.00%), Postives = 50/100 (50.00%), Query Frame = 0
Query:  164 EKIEPLPSHLLPRPGCGMQKASSKKKKPKKTGGPKVEGKPDVAATPGPSRGLDSAVKELMANYEARSSERVPFYCRVCQFQGDSLEALERHKQGELHQEA 263
            +++E L S  LP PG     A  K K PKK+                  RGL+  V+E++  Y ARSSE++PFYCR C  Q ++ E    HK  E H+ A
Sbjct:  169 DRVESLASACLPVPG--RYDAMKKIKNPKKSA---------------EKRGLEMKVQEILGGYTARSSEKLPFYCRFCSKQYENKEDFYEHKNFEFHKTA 251          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig116.31.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KMP8_9PHAE2.790e-5960.59C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FWN0_ECTSI2.230e-5861.47C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A835Z659_9STRA1.380e-1263.27C2H2-type domain-containing protein (Fragment) n=1... [more]
A0A4D9D0V7_9STRA2.790e-1138.58C2H2-type domain-containing protein n=1 Tax=Nannoc... [more]
I2CRP9_NANGC3.050e-1162.50C2h2 zinc finger protein (Fragment) n=1 Tax=Nannoc... [more]
W7TIZ9_9STRA1.050e-1062.50C2h2 zinc finger n=1 Tax=Nannochloropsis gaditana ... [more]
B7FRV3_PHATC1.570e-730.82Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1E7F3F2_9STRA1.310e-537.00Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 236..260
e-value: 2.5
score: 17.1
coord: 271..295
e-value: 0.12
score: 21.5
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 273..295
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 260..302
e-value: 2.7E-8
score: 35.2
NoneNo IPR availablePFAMPF12874zf-metcoord: 272..295
e-value: 2.5E-7
score: 30.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..214
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 328..343
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 286..373
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 265..303

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig116contigP-littoralis_Contig116:135628..138206 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig116.31.2mRNA_P-littoralis_Contig116.31.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig116 135628..138324 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig116.31.2 ID=prot_P-littoralis_Contig116.31.2|Name=mRNA_P-littoralis_Contig116.31.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=373bp
MAHQYTRALLSSPSRTTVALPRRQAHTRIMSQPPTMSQLLKRAGLAKRPR
LGQQQSKTKRSTATAAVDGGSSGRGDSSSSAGEEDEEVEGRGLGAISDAT
GILAVDDQIAALERELEDGGDSSSSGSDDSSSSEGSEDDADGDRSDQDRK
RRPLLKFASPLEAEKIEPLPSHLLPRPGCGMQKASSKKKKPKKTGGPKVE
GKPDVAATPGPSRGLDSAVKELMANYEARSSERVPFYCRVCQFQGDSLEA
LERHKQGELHQEASKKERKISTCSLCKKQFTSPPQLKEHLAGRAHLERVQ
ATMSRQGKWVPGGRGGRGGGRGSGRSEESTDFCSRDNDGGSSERSGMRGR
GWASGRGRGRGGRRGGRIGRGGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf