mRNA_P-littoralis_Contig61.40.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig61.40.1
Unique NamemRNA_P-littoralis_Contig61.40.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig61.40.1 vs. uniprot
Match: D8LPU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPU0_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 2.850e-10
Identity = 42/125 (33.60%), Postives = 69/125 (55.20%), Query Frame = 1 
Query:    1 RWS---AADTCHGLGGVKTIFENDVLRTGRGRAVEDV--DLERRVEVLFGLIGFLATFVIDENSVARRRFRALEEDLERMWVKIRDFFSSNRRLVATDQFVTAFTVAFHAAFGEWARDLAKKGIK 360
            RWS   AA   + +GGV     +     G G   ++V  D++RRV++LF ++G L  F + ++ VA+ RF A E +      +IR FF+++  L  +D+F  AF  AF+  F EWA  +A++  +
Sbjct:   11 RWSFGSAAAQMYAMGGVDVRCFSGRGCEGAGGGQQEVVLDMDRRVDILFDVVGRLGKFAV-QDDVAKHRFSAWEGETRASAKRIRAFFTAHLLLARSDRFKGAFATAFNRDFEEWALGVAERAFE 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig61.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPU0_ECTSI2.850e-1033.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig61contigP-littoralis_Contig61:213195..213565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size372
Hectar predicted targeting categoryother localisation
Exons1
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791269.479329-CDS-P-littoralis_Contig61:213196..2135651680791269.479329-CDS-P-littoralis_Contig61:213196..213565Pylaiella littoralis U1_48CDSP-littoralis_Contig61 213197..213565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig61.40.1prot_P-littoralis_Contig61.40.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig61 213197..213565 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig61.40.1

>prot_P-littoralis_Contig61.40.1 ID=prot_P-littoralis_Contig61.40.1|Name=mRNA_P-littoralis_Contig61.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
RWSAADTCHGLGGVKTIFENDVLRTGRGRAVEDVDLERRVEVLFGLIGFL
ATFVIDENSVARRRFRALEEDLERMWVKIRDFFSSNRRLVATDQFVTAFT
VAFHAAFGEWARDLAKKGIKLQS
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mRNA from alignment at P-littoralis_Contig61:213195..213565-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig61.40.1 ID=mRNA_P-littoralis_Contig61.40.1|Name=mRNA_P-littoralis_Contig61.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=371bp|location=Sequence derived from alignment at P-littoralis_Contig61:213195..213565- (Pylaiella littoralis U1_48)
CGATGGAGCGCGGCAGATACTTGCCATGGGCTCGGTGGAGTTAAAACCAT
TTTCGAGAACGACGTACTTAGGACGGGGCGAGGGCGAGCCGTGGAGGACG
TCGACCTGGAACGCCGTGTGGAGGTTTTGTTCGGGCTCATTGGGTTTCTG
GCGACGTTTGTGATAGACGAGAACTCAGTGGCGAGGCGCCGCTTTCGCGC
GTTGGAGGAGGACTTGGAGCGGATGTGGGTCAAGATTCGGGATTTCTTCT
CGTCAAACCGGCGGCTGGTGGCAACAGATCAATTTGTGACGGCGTTCACA
GTCGCCTTTCATGCCGCTTTCGGAGAGTGGGCGCGGGATCTCGCGAAGAA
AGGAATCAAGTTGCAGAGCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig61:213195..213565-

>mRNA_P-littoralis_Contig61.40.1 ID=mRNA_P-littoralis_Contig61.40.1|Name=mRNA_P-littoralis_Contig61.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig61:213195..213565- (Pylaiella littoralis U1_48)
CGATGGAGCGCGGCAGATACTTGCCATGGGCTCGGTGGAGTTAAAACCAT
TTTCGAGAACGACGTACTTAGGACGGGGCGAGGGCGAGCCGTGGAGGACG
TCGACCTGGAACGCCGTGTGGAGGTTTTGTTCGGGCTCATTGGGTTTCTG
GCGACGTTTGTGATAGACGAGAACTCAGTGGCGAGGCGCCGCTTTCGCGC
GTTGGAGGAGGACTTGGAGCGGATGTGGGTCAAGATTCGGGATTTCTTCT
CGTCAAACCGGCGGCTGGTGGCAACAGATCAATTTGTGACGGCGTTCACA
GTCGCCTTTCATGCCGCTTTCGGAGAGTGGGCGCGGGATCTCGCGAAGAA
AGGAATCAAGTTGCAGAGC
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