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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1855 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-12_000550.2 |
| Cds size | 1116 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680791269.2471871-UTR-P-littoralis_Contig61:147112..147511 | 1680791269.2471871-UTR-P-littoralis_Contig61:147112..147511 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig61 147113..147511 + |
| 1680791269.2736754-UTR-P-littoralis_Contig61:148627..148967 | 1680791269.2736754-UTR-P-littoralis_Contig61:148627..148967 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig61 148628..148967 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680791269.2618217-CDS-P-littoralis_Contig61:147511..148627 | 1680791269.2618217-CDS-P-littoralis_Contig61:147511..148627 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig61 147512..148627 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig61.17.1 >prot_P-littoralis_Contig61.17.1 ID=prot_P-littoralis_Contig61.17.1|Name=mRNA_P-littoralis_Contig61.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=372bp
MADPGNGGNGGEKGAEVNNGQAIAIQLLMEKVQGLQQQVNAQQASAQQQQ
QHPQQQINVQEGGEIHQQEEEEEEEEKEDEVILAGEGEGAAQGQPIDLVQ
QQRQLQQMEKKQEGMEAKLAVIIPMPDAIKQRLEVGNHPRDSQVRFGLND
GGAMGDDALVVPAASEAEKSTGQKETEKRDSREWIAKEGVRRWYAAMEST
PAVTTSRLQEQVHDGLDVTDAAFKSIITLSDMEIKNFRPRQVQIGGNKPK
SERIIINDRFAAFTHGLEAIVAPSTAHSLSPRAIAFLAQFQVLTKELHTY
VSKYRAAFQGDFGDTLMTNLENAVDEDLEQVAAKAGEVADKLRQRFRFGP
PEGTSQDYNIPNIAGLDFTYT* back to topmRNA from alignment at P-littoralis_Contig61:147113..148967+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig61.17.1 ID=mRNA_P-littoralis_Contig61.17.1|Name=mRNA_P-littoralis_Contig61.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1855bp|location=Sequence derived from alignment at P-littoralis_Contig61:147113..148967+ (Pylaiella littoralis U1_48)
GACGCTCCAACCGGGGTCACACAGGGGGAAGTCAACACAGGAGTTTTTTT
TTTCTTCTCCACTTCCCTCTGCGGTGCTTGCCTTTTTGGTTGAGCTTTTA
TCGCGAGAAAGGGGACAGCAATCCCTTTCCCTCGTCGATGGTACGATCGA
ATTTTGTTTACTCGCGAATTGATCGCTTTCCACTTTCACGCGCAACGCGA
GAAAAAGCCCCAGATCGTGTTACTGCACTGGGATTCGAACTCACGCGTGA
ATGTCAGAAGGATGCGTGGATAACCAACTGAACCACCGGGGCGAGAGAGA
CCATATTATTACCGTACACGGTCTGGAGAAAGTGGAGCAGAGGGAACGAC
GAGAGGGTCGATTGAAGGACGAGAGGGTCGATTGAAGGACTTGCTCACCA
TGGCGGATCCAGGGAACGGAGGGAATGGAGGGGAGAAAGGGGCAGAGGTG
AACAATGGGCAAGCGATAGCTATACAGTTGCTCATGGAAAAAGTTCAAGG
TCTACAGCAGCAGGTCAACGCCCAACAGGCTAGTGCACAGCAACAACAAC
AGCACCCACAGCAGCAAATAAATGTTCAAGAAGGGGGGGAGATACATCAA
CAAGAAGAGGAGGAAGAGGAGGAGGAGAAAGAAGACGAGGTGATATTGGC
AGGGGAAGGCGAGGGAGCGGCTCAAGGACAGCCTATTGATCTCGTACAGC
AGCAGAGACAGCTTCAGCAGATGGAAAAAAAGCAAGAAGGTATGGAAGCG
AAGCTTGCTGTCATCATCCCTATGCCGGATGCCATCAAACAGCGATTGGA
GGTGGGCAATCACCCAAGGGACTCCCAGGTGCGGTTTGGATTGAACGATG
GCGGAGCAATGGGTGATGATGCATTGGTGGTTCCGGCTGCATCGGAGGCG
GAGAAATCTACTGGGCAGAAGGAGACTGAAAAACGCGATTCTCGGGAATG
GATTGCGAAAGAAGGCGTGCGCCGCTGGTACGCGGCGATGGAGAGTACAC
CGGCCGTCACAACCTCGAGATTGCAGGAGCAAGTGCATGATGGGTTGGAC
GTGACGGACGCGGCATTTAAAAGCATCATCACGCTTTCCGACATGGAGAT
CAAAAACTTCAGGCCGCGCCAAGTACAAATCGGGGGCAACAAGCCAAAAT
CGGAGCGGATTATTATCAACGACAGGTTCGCGGCTTTCACGCATGGTCTC
GAGGCAATTGTGGCACCCAGTACAGCTCACTCGCTGTCACCTCGGGCGAT
TGCGTTTTTGGCTCAATTTCAGGTACTGACGAAGGAGTTACACACCTACG
TATCCAAGTACCGTGCTGCCTTTCAAGGAGACTTCGGCGACACGCTGATG
ACCAATTTGGAGAATGCTGTCGACGAAGATTTGGAACAGGTTGCGGCCAA
GGCAGGGGAGGTAGCAGACAAGCTTAGGCAAAGATTCCGATTCGGACCTC
CGGAGGGGACATCACAAGACTACAACATTCCCAACATTGCCGGACTGGAC
TTCACGTACACTTGACAGGCGACAAATAATATCTCGGGGGTCCACCAAAA
TCTCCTTTTCATGTCTGCGGCGTCAACAGCATCCGGTGGAGGCGGGAATG
CGCGCGGGGTGGCAGCTGGCGAGGTTGGCGCAAGCAAGAAGCGTACGGTT
ACGCAAGCCTTTGCGGCAGGAAGAGGAAAAACTGATGGATTGCGCTTTCC
TCCGACAGCCGGAAGGGGACAGTCGTCACGCACGGCTATGCTCCAACAAG
AAGGAGTTCCTTTTGGAACGTGCGCATTTTGGTACACTCGGGGGTCATGT
ACTTGGGGGAACGGATGTCGGTTTCTGCACGACACCACCAAGGCCGTAAC
CGGGG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig61:147113..148967+ >mRNA_P-littoralis_Contig61.17.1 ID=mRNA_P-littoralis_Contig61.17.1|Name=mRNA_P-littoralis_Contig61.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1116bp|location=Sequence derived from alignment at P-littoralis_Contig61:147113..148967+ (Pylaiella littoralis U1_48)
ATGGCGGATCCAGGGAACGGAGGGAATGGAGGGGAGAAAGGGGCAGAGGT
GAACAATGGGCAAGCGATAGCTATACAGTTGCTCATGGAAAAAGTTCAAG
GTCTACAGCAGCAGGTCAACGCCCAACAGGCTAGTGCACAGCAACAACAA
CAGCACCCACAGCAGCAAATAAATGTTCAAGAAGGGGGGGAGATACATCA
ACAAGAAGAGGAGGAAGAGGAGGAGGAGAAAGAAGACGAGGTGATATTGG
CAGGGGAAGGCGAGGGAGCGGCTCAAGGACAGCCTATTGATCTCGTACAG
CAGCAGAGACAGCTTCAGCAGATGGAAAAAAAGCAAGAAGGTATGGAAGC
GAAGCTTGCTGTCATCATCCCTATGCCGGATGCCATCAAACAGCGATTGG
AGGTGGGCAATCACCCAAGGGACTCCCAGGTGCGGTTTGGATTGAACGAT
GGCGGAGCAATGGGTGATGATGCATTGGTGGTTCCGGCTGCATCGGAGGC
GGAGAAATCTACTGGGCAGAAGGAGACTGAAAAACGCGATTCTCGGGAAT
GGATTGCGAAAGAAGGCGTGCGCCGCTGGTACGCGGCGATGGAGAGTACA
CCGGCCGTCACAACCTCGAGATTGCAGGAGCAAGTGCATGATGGGTTGGA
CGTGACGGACGCGGCATTTAAAAGCATCATCACGCTTTCCGACATGGAGA
TCAAAAACTTCAGGCCGCGCCAAGTACAAATCGGGGGCAACAAGCCAAAA
TCGGAGCGGATTATTATCAACGACAGGTTCGCGGCTTTCACGCATGGTCT
CGAGGCAATTGTGGCACCCAGTACAGCTCACTCGCTGTCACCTCGGGCGA
TTGCGTTTTTGGCTCAATTTCAGGTACTGACGAAGGAGTTACACACCTAC
GTATCCAAGTACCGTGCTGCCTTTCAAGGAGACTTCGGCGACACGCTGAT
GACCAATTTGGAGAATGCTGTCGACGAAGATTTGGAACAGGTTGCGGCCA
AGGCAGGGGAGGTAGCAGACAAGCTTAGGCAAAGATTCCGATTCGGACCT
CCGGAGGGGACATCACAAGACTACAACATTCCCAACATTGCCGGACTGGA
CTTCACGTACACTTGA back to top
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