mRNA_P-littoralis_Contig61.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig61.3.1
Unique NamemRNA_P-littoralis_Contig61.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig61.3.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 409 bits (1052), Expect = 6.830e-143
Identity = 202/255 (79.22%), Postives = 222/255 (87.06%), Query Frame = 1
Query:    1 MAWATLMKLREALVKRAGEIYARRLPPAPGESSVDGKDLTSEQLESVAEEVFEELGNMDQTPVQHEMPAETTLQQRGAKDARIATGGKEKERFTLCLAVTADGKKVPVRIIFKGTPFIPTVT-GVGRATQPWKNSIAAEILPQNRRKFGHPMGGMSFGVQEKNWCDLRECKLWIKESWRVRPNNGSVLKQRACILVLDDFKCDKDDEFIAFLKRDTNTIIIFIPGGLTPLLQPLDRMLNKQMKRLLRDMYTKHSA 762
            MAWATLMKLREALV+RA EIYARR PPAPGES + G+DLTSEQLESV  EVF ELGNMDQTPVQHEMP ET+L++ GAKDARIATGGKEKERFTLCLAVT D KKVP+R IFKGTP IP    G G+ATQP KNSIA E+LP+NR K G+P+GGMSFGVQEK+WCDLRECKLWIK SW +RPNNGS++KQR CILVLDDFKC KDD FIA LKR  NTI+IFIPGGLTPLLQPLDRMLNK+MKRLLR MYT + +
Sbjct:    1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNYQS 255          
BLAST of mRNA_P-littoralis_Contig61.3.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 419 bits (1077), Expect = 9.360e-136
Identity = 201/255 (78.82%), Postives = 227/255 (89.02%), Query Frame = 1
Query:    1 MAWATLMKLREALVKRAGEIYARRLPPAPGESSVDGKDLTSEQLESVAEEVFEELGNMDQTPVQHEMPAETTLQQRGAKDARIATGGKEKERFTLCLAVTADGKKVPVRIIFKGTPFIPTVT-GVGRATQPWKNSIAAEILPQNRRKFGHPMGGMSFGVQEKNWCDLRECKLWIKESWRVRPNNGSVLKQRACILVLDDFKCDKDDEFIAFLKRDTNTIIIFIPGGLTPLLQPLDRMLNKQMKRLLRDMYTKHSA 762
            MAWATLMKLR+AL++RAGEIYA+R PPAPGES + G+DL+S QLE V +E+FEELGNMDQTPVQHEMP ETTL+  GAKDARIATGGKEKERFTLCLAV+ADGKKVP+RIIFKGTPF+P  T G G+ATQP KNSIA E+LP NR K G P+GGMSFGVQEK+WCDLRECKLWIK+SW++RPNNGS+++QR CILVLDDFKC KDD FIA LKR+ NTI+IFIPGGL PL QPLDRMLNKQMKRLLR MYT H+A
Sbjct:  217 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAHTA 471          
BLAST of mRNA_P-littoralis_Contig61.3.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 398 bits (1022), Expect = 9.310e-134
Identity = 199/281 (70.82%), Postives = 228/281 (81.14%), Query Frame = 1
Query:    1 MAWATLMKLREALVKRAGEIYARRLPPAPGESSVDGKDLTSEQLESVAEEVFEELGNMDQTPVQHEMPAETTLQQRGAKDARIATG--------------------------GKEKERFTLCLAVTADGKKVPVRIIFKGTPFIPTVT-GVGRATQPWKNSIAAEILPQNRRKFGHPMGGMSFGVQEKNWCDLRECKLWIKESWRVRPNNGSVLKQRACILVLDDFKCDKDDEFIAFLKRDTNTIIIFIPGGLTPLLQPLDRMLNKQMKRLLRDMYTKHSA 762
            MAWATLMKLR+AL++RAGEIYA+R PPAPGES + G+DL+S QLE V +E+F++LGNMDQTPVQ+EMP ETTL++ GAKDARIATG                          GKEKERFTLCLAV+ADG KVP+RIIFKGTPF+P  T G G+ATQP KNSIA E+LP NR K G P+GGMSFGVQEK+WCDLRE KLWIK+SW++RPNNGSV++QR CILVLDDFKC KDD FIA LKR+ NTI+IFIPGGLTPLLQPLDRMLNKQMKRLLR MYT H+A
Sbjct:  150 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTA 430          
BLAST of mRNA_P-littoralis_Contig61.3.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 390 bits (1001), Expect = 5.060e-132
Identity = 195/255 (76.47%), Postives = 215/255 (84.31%), Query Frame = 1
Query:    1 MAWATLMKLREALVKRAGEIYARRLPPAPGESSVDGKDLTSEQLESVAEEVFEELGNMDQTPVQHEMPAETTLQQRGAKDARIATGGKEKERFTLCLAVTADGKKVPVRIIFKGTPFIP-TVTGVGRATQPWKNSIAAEILPQNRRKFGHPMGGMSFGVQEKNWCDLRECKLWIKESWRVRPNNGSVLKQRACILVLDDFKCDKDDEFIAFLKRDTNTIIIFIPGGLTPLLQPLDRMLNKQMKRLLRDMYTKHSA 762
            MAWAT+MKLREALVKRAGEIYARR PPAP ES + G+DLTSEQL SV  EVFEELGNMDQTPVQHE+P ETTL++ GAKDARI+TGGKEKERFTL LAV ADGKKV  RIIFKGTPF P TV+G G++T P KNS+A EI P NR K GHP  GMSFGVQEK+W D REC  WI  SW++RPNNGS+++QR CILVLDDFKC KD+ FIA LKRD NTI+IFIPG LTPLLQPLDRMLNKQMKRLLR  YT +SA
Sbjct:   63 MAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSA 317          
BLAST of mRNA_P-littoralis_Contig61.3.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 383 bits (984), Expect = 4.000e-130
Identity = 191/255 (74.90%), Postives = 213/255 (83.53%), Query Frame = 1
Query:    1 MAWATLMKLREALVKRAGEIYARRLPPAPGESSVDGKDLTSEQLESVAEEVFEELGNMDQTPVQHEMPAETTLQQRGAKDARIATGGKEKERFTLCLAVTADGKKVPVRIIFKGTPFIP-TVTGVGRATQPWKNSIAAEILPQNRRKFGHPMGGMSFGVQEKNWCDLRECKLWIKESWRVRPNNGSVLKQRACILVLDDFKCDKDDEFIAFLKRDTNTIIIFIPGGLTPLLQPLDRMLNKQMKRLLRDMYTKHSA 762
            MAWAT+MKLREALV+RAGEIYARR PPAP ES + G+DLT EQL SV  EVF+ELGNMDQTPVQHEMP ETTL++ GAKDARI+TGGKEKERFTL LAV ADGKKV  RIIFKGTPFIP  V+G G++T P KNS+A EI P NR K  HP  GMSFGVQEK+W D REC  WI  SW++RPNNGS+++QR CILVLDDFKC KD+ +IA LKRD NTI+I IPGGLTPLLQPLDRMLNKQMKRLLR  YT +SA
Sbjct:   63 MAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSA 317          
BLAST of mRNA_P-littoralis_Contig61.3.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 379 bits (972), Expect = 4.460e-128
Identity = 187/250 (74.80%), Postives = 211/250 (84.40%), Query Frame = 1
Query:   16 LMKLREALVKRAGEIYARRLPPAPGESSVDGKDLTSEQLESVAEEVFEELGNMDQTPVQHEMPAETTLQQRGAKDARIATGGKEKERFTLCLAVTADGKKVPVRIIFKGTPFIP-TVTGVGRATQPWKNSIAAEILPQNRRKFGHPMGGMSFGVQEKNWCDLRECKLWIKESWRVRPNNGSVLKQRACILVLDDFKCDKDDEFIAFLKRDTNTIIIFIPGGLTPLLQPLDRMLNKQMKRLLRDMYTKHSA 762
            +MKLREALVKRAGEIYARR PPAP ES + G+DLTSEQL SV  EVFE+LGNMDQTPVQHEMP ETTL++ GAKDAR++TGG+EKERFTL LAVTADGKKV +RIIF GTPFIP TV+G G++T P KNS+A E+ P NR K GHP  GMSFGVQEK+W D REC  W   SW++RPNNGS+++QR CILVLDDFKC KD+ FIA LKRD NTI+IFIPGGLTPLLQPLDRMLNKQ KRLLR  YT +SA
Sbjct:    2 VMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAYSA 251          
BLAST of mRNA_P-littoralis_Contig61.3.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 379 bits (972), Expect = 4.070e-126
Identity = 184/255 (72.16%), Postives = 214/255 (83.92%), Query Frame = 1
Query:    1 MAWATLMKLREALVKRAGEIYARRLPPAPGESSVDGKDLTSEQLESVAEEVFEELGNMDQTPVQHEMPAETTLQQRGAKDARIATGGKEKERFTLCLAVTADGKKVPVRIIFKGTPFIPTVT-GVGRATQPWKNSIAAEILPQNRRKFGHPMGGMSFGVQEKNWCDLRECKLWIKESWRVRPNNGSVLKQRACILVLDDFKCDKDDEFIAFLKRDTNTIIIFIPGGLTPLLQPLDRMLNKQMKRLLRDMYTKHSA 762
            MAWATLMKLR+AL++RAG+IYA+R PPAPGE+ + G+DL+S QLE V +E+FEELGNMDQTPVQHE P E   +    +  R       +ERFTLCLAV+ADGKKVP+RIIFKGTPF+P  T G G+ATQP KNSIA E+LP NR K G P+GGMSFGVQEK+WCDLRECKLWIK+SW++RPNNGS+++QR CILVLDDFKC KDD FIA LKR+ NTI+IFIPGGLTPLLQPLDRMLNKQMKRLLR MYT H+A
Sbjct:  187 MAWATLMKLRKALLERAGKIYAQRYPPAPGENPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHETPVERLWK----RPVRRMPASPPEERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTA 437          
BLAST of mRNA_P-littoralis_Contig61.3.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 370 bits (950), Expect = 2.140e-122
Identity = 189/263 (71.86%), Postives = 209/263 (79.47%), Query Frame = 1
Query:    1 MAWATLMKLREALVKRAGEIYARRLPPAPGESSVDGKDLTSEQLESVAEEVFEELGNMDQTPVQHEMPAETTLQQRGAKDARIATGGKEKERFTLCLAVTADGKKVPVRIIFKGTPFIP-TVTGVGRATQPWKNSIAAEILPQNRRKFGHPMGGMSFGVQEKNWCDLRECKLWIKESWRV--------RPNNGSVLKQRACILVLDDFKCDKDDEFIAFLKRDTNTIIIFIPGGLTPLLQPLDRMLNKQMKRLLRDMYTKHSA 762
            MAWAT+ KLREALVKRAGEIYARR PPAP ES + G+DLTSEQ  SV  EVFEELGNMDQTPVQHEMP ETTL+  G KDARI+TGGKEKERFTL LAV ADGK V   IIFKGTPFIP TV+G G++T P KNS+A E+ P NR K GHP  GMSFGVQEK+W   +EC  WI  SW++        RPNNGS+++QR CILVLDDFKC KD+ FIA L RD NTI+IFIPGGLTPLLQPLDRMLNKQMKRLLR  YT +SA
Sbjct:  217 MAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSA 479          
BLAST of mRNA_P-littoralis_Contig61.3.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 371 bits (953), Expect = 4.920e-122
Identity = 188/255 (73.73%), Postives = 210/255 (82.35%), Query Frame = 1
Query:    1 MAWATLMKLREALVKRAGEIYARRLPPAPGESSVDGKDLTSEQLESVAEEVFEELGNMDQTPVQHEMPAETTLQQRGAKDARIATGG-KEKERFTLCLAVTADGKKVPVRIIFKGTPFIP-TVTGVGRATQPWKNSIAAEILPQNRRKFGHPMGGMSFGVQEKNWCDLRECKLWIKESWRVRPNNGSVLKQRACILVLDDFKCDKDDEFIAFLKRDTNTIIIFIPGGLTPLLQPLDRMLNKQMKRLLRDMYTKHS 759
            MAWAT+MKL EALVKRAGEIYARR PPAP ES + G+DL SEQL SV  EVFEE+GNMDQ PVQHEMP ETTL + GAKDARI+TGG  EKERFTL LAVTADGKKV  RIIF+GTPFIP TV+G G++T+P KN +A E+ P NR K GHP  GMSFGVQEK+W D REC  WI  SW++RPNNGS+++QR  ILVLDDFKC  D+ FIA LKRD NTI+IFIPGGLTPLLQPLDRMLNKQMKRLLR  YT +S
Sbjct:  257 MAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYS 511          
BLAST of mRNA_P-littoralis_Contig61.3.1 vs. uniprot
Match: A0A6H5KEE8_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE8_9PHAE)

HSP 1 Score: 364 bits (935), Expect = 1.790e-120
Identity = 181/246 (73.58%), Postives = 204/246 (82.93%), Query Frame = 1
Query:    1 MAWATLMKLREALVKRAGEIYARRLPPAPGESSVDGKDLTSEQLESVAEEVFEELGNMDQTPVQHEMPAETTLQQRGAKDARIATGGKEKERFTLCLAVTADGKKVPVRIIFKGTPFIPTVT-GVGRATQPWKNSIAAEILPQNRRKFGHPMGGMSFGVQEKNWCDLRECKLWIKESWRVRPNNGSVLKQRACILVLDDFKCDKDDEFIAFLKRDTNTIIIFIPGGLTPLLQPLDRMLNKQMKRLL 735
            MAWATLMKLR+AL++RAGEIYA+R PPAPGES + G+DL+S QLE V +E+FEELGNMDQTPVQHE  A                GGKEKERFTLCLAV+ADGKKVP+RIIFKGTPF+P  T G G+ATQP KNSIA E+LP NR K G P+ GMSFGVQEK+WCDLRECKLWIK SW++RPNNGS+++QR CILVLDDFKC KDD FIA LKR+ NTI+IFIPGGLTPLLQ LDRMLNKQMKRLL
Sbjct:  204 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHERDA----------------GGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVEGMSFGVQEKSWCDLRECKLWIKGSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQLLDRMLNKQMKRLL 433          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig61.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXD3_ECTSI6.830e-14379.22DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE9.360e-13678.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE45_9PHAE9.310e-13470.82DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE5.060e-13276.47DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE4.000e-13074.90DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE4.460e-12874.80DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ1_9PHAE4.070e-12672.16DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JTG5_9PHAE2.140e-12271.86DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE4.920e-12273.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEE8_9PHAE1.790e-12073.58DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig61contigP-littoralis_Contig61:30384..31488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FXD3
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size762
Max annot lvl2759|Eukaryota
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.12e-143
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
Ec32 ortholog descriptionDDE superfamily endonuclease, CENP-B-like
Ec32 orthologEc-00_004110.1
DescriptionDNA binding
Cds size762
COG categoryCH
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791268.9701772-CDS-P-littoralis_Contig61:30383..306421680791268.9701772-CDS-P-littoralis_Contig61:30383..30642Pylaiella littoralis U1_48CDSP-littoralis_Contig61 30384..30642 +
1680791268.9820657-CDS-P-littoralis_Contig61:30985..314881680791268.9820657-CDS-P-littoralis_Contig61:30985..31488Pylaiella littoralis U1_48CDSP-littoralis_Contig61 30986..31488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig61.3.1prot_P-littoralis_Contig61.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig61 30384..31488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig61.3.1

>prot_P-littoralis_Contig61.3.1 ID=prot_P-littoralis_Contig61.3.1|Name=mRNA_P-littoralis_Contig61.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=254bp
MAWATLMKLREALVKRAGEIYARRLPPAPGESSVDGKDLTSEQLESVAEE
VFEELGNMDQTPVQHEMPAETTLQQRGAKDARIATGGKEKERFTLCLAVT
ADGKKVPVRIIFKGTPFIPTVTGVGRATQPWKNSIAAEILPQNRRKFGHP
MGGMSFGVQEKNWCDLRECKLWIKESWRVRPNNGSVLKQRACILVLDDFK
CDKDDEFIAFLKRDTNTIIIFIPGGLTPLLQPLDRMLNKQMKRLLRDMYT
KHSA
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mRNA from alignment at P-littoralis_Contig61:30384..31488+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig61.3.1 ID=mRNA_P-littoralis_Contig61.3.1|Name=mRNA_P-littoralis_Contig61.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1105bp|location=Sequence derived from alignment at P-littoralis_Contig61:30384..31488+ (Pylaiella littoralis U1_48)
ATGGCGTGGGCGACGCTGATGAAGCTGCGCGAGGCTCTCGTGAAGCGCGC TGGGGAGATCTACGCTCGGCGCCTACCCCCTGCACCTGGTGAGAGCTCCG TCGACGGGAAGGACCTGACTTCCGAGCAGCTGGAGTCGGTCGCCGAAGAG GTGTTCGAAGAACTCGGCAACATGGACCAGACGCCAGTCCAGCACGAGAT GCCGGCGGAGACGACGCTGCAGCAGCGCGGTGCTAAGGACGCTCGCATTG CCACAGGAGGTGAGAGTGAACTGCGGTGCTGCGAGTTGTGTACGAGGAGT ACCTACATGTTTCCCTGTTCCTATCAAGTATTGGCGTCTTCGTTGTTGCA GGTTTCTTTTTGGTCTTGGTGTTTTGTACTCCGTATTTTTTAGTTCTGGG AAATCCGTACGTCTACAATTTGCAGCCATGTCAACACCTCTTTCCGATGC AGTTTTTGATTGTGGTGTTTTTTCCTCTCTCTTGGAAATCCGTACGTGTA CCGTCTGCAGCCATCCATGTCAAGCGCCATCTGCTGGTCAGCATTGTTCA AACCCCTCCTCCTACTCGCCTACCCCCTACCGTCGTGTGCACCCCTCCCC AGGAAAGGAGAAGGAACGCTTCACGCTTTGCCTTGCTGTCACGGCGGACG GGAAGAAGGTTCCAGTGCGCATCATCTTTAAGGGGACCCCGTTCATCCCG ACGGTCACCGGTGTGGGCAGGGCAACTCAGCCGTGGAAGAATTCCATCGC GGCTGAGATCCTTCCCCAGAACCGTCGCAAGTTCGGGCACCCCATGGGAG GCATGTCTTTCGGCGTGCAGGAGAAAAACTGGTGCGACCTGCGGGAGTGC AAGCTCTGGATCAAGGAGAGCTGGAGGGTCCGCCCGAACAACGGCAGCGT CCTCAAGCAGCGGGCATGCATCTTGGTGCTGGACGACTTCAAGTGCGACA AGGACGACGAGTTCATCGCCTTCCTCAAGAGGGACACCAACACCATCATC ATCTTCATCCCAGGCGGGTTGACTCCTCTCCTCCAACCGCTGGATCGCAT GCTCAACAAGCAGATGAAGCGGCTGCTGCGGGACATGTACACGAAGCACT CGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig61:30384..31488+

>mRNA_P-littoralis_Contig61.3.1 ID=mRNA_P-littoralis_Contig61.3.1|Name=mRNA_P-littoralis_Contig61.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=762bp|location=Sequence derived from alignment at P-littoralis_Contig61:30384..31488+ (Pylaiella littoralis U1_48)
ATGGCGTGGGCGACGCTGATGAAGCTGCGCGAGGCTCTCGTGAAGCGCGC
TGGGGAGATCTACGCTCGGCGCCTACCCCCTGCACCTGGTGAGAGCTCCG
TCGACGGGAAGGACCTGACTTCCGAGCAGCTGGAGTCGGTCGCCGAAGAG
GTGTTCGAAGAACTCGGCAACATGGACCAGACGCCAGTCCAGCACGAGAT
GCCGGCGGAGACGACGCTGCAGCAGCGCGGTGCTAAGGACGCTCGCATTG
CCACAGGAGGAAAGGAGAAGGAACGCTTCACGCTTTGCCTTGCTGTCACG
GCGGACGGGAAGAAGGTTCCAGTGCGCATCATCTTTAAGGGGACCCCGTT
CATCCCGACGGTCACCGGTGTGGGCAGGGCAACTCAGCCGTGGAAGAATT
CCATCGCGGCTGAGATCCTTCCCCAGAACCGTCGCAAGTTCGGGCACCCC
ATGGGAGGCATGTCTTTCGGCGTGCAGGAGAAAAACTGGTGCGACCTGCG
GGAGTGCAAGCTCTGGATCAAGGAGAGCTGGAGGGTCCGCCCGAACAACG
GCAGCGTCCTCAAGCAGCGGGCATGCATCTTGGTGCTGGACGACTTCAAG
TGCGACAAGGACGACGAGTTCATCGCCTTCCTCAAGAGGGACACCAACAC
CATCATCATCTTCATCCCAGGCGGGTTGACTCCTCTCCTCCAACCGCTGG
ATCGCATGCTCAACAAGCAGATGAAGCGGCTGCTGCGGGACATGTACACG
AAGCACTCGGCG
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