mRNA_P-littoralis_Contig61.125.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig61.125.1
Unique NamemRNA_P-littoralis_Contig61.125.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig61.125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig61contigP-littoralis_Contig61:698276..698568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size267
Hectar predicted targeting categorysignal peptide
Exons2
Cds size183
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791268.6184747-UTR-P-littoralis_Contig61:698275..6983281680791268.6184747-UTR-P-littoralis_Contig61:698275..698328Pylaiella littoralis U1_48UTRP-littoralis_Contig61 698276..698328 -
1680791268.65447-UTR-P-littoralis_Contig61:698537..6985681680791268.65447-UTR-P-littoralis_Contig61:698537..698568Pylaiella littoralis U1_48UTRP-littoralis_Contig61 698538..698568 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791268.631132-CDS-P-littoralis_Contig61:698328..6984171680791268.631132-CDS-P-littoralis_Contig61:698328..698417Pylaiella littoralis U1_48CDSP-littoralis_Contig61 698329..698417 -
1680791268.6432347-CDS-P-littoralis_Contig61:698443..6985371680791268.6432347-CDS-P-littoralis_Contig61:698443..698537Pylaiella littoralis U1_48CDSP-littoralis_Contig61 698444..698537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig61.125.1prot_P-littoralis_Contig61.125.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig61 698329..698537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig61.125.1

>prot_P-littoralis_Contig61.125.1 ID=prot_P-littoralis_Contig61.125.1|Name=mRNA_P-littoralis_Contig61.125.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
MIIFLVLFCASGFGAYCCFPRPLYVCILLPRNVVVTVVQGRFKPFCFKIT
GRCTRRVEIW*
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mRNA from alignment at P-littoralis_Contig61:698276..698568-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig61.125.1 ID=mRNA_P-littoralis_Contig61.125.1|Name=mRNA_P-littoralis_Contig61.125.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=293bp|location=Sequence derived from alignment at P-littoralis_Contig61:698276..698568- (Pylaiella littoralis U1_48)
GCGTAGGGTGATTTTTTTCAATCGCGTGTGTATGATTATTTTTTTGGTAT
TGTTTTGTGCTTCTGGCTTTGGCGCATACTGCTGTTTTCCTCGTCCCTTG
TATGTGTGTATTTTGCTGCCGAGAACTGATAATCTTTTGTTGCGGATTGG
CATGTGGTCGTGACGGTAGTACAGGGACGTTTCAAACCTTTTTGTTTCAA
AATCACCGGTCGATGTACACGAAGAGTAGAAATTTGGTGAAGCGAACTCT
ACGGCAATAAAGTGCGGTTTTCACAAACGTATTATTTGCAACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig61:698276..698568-

>mRNA_P-littoralis_Contig61.125.1 ID=mRNA_P-littoralis_Contig61.125.1|Name=mRNA_P-littoralis_Contig61.125.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig61:698276..698568- (Pylaiella littoralis U1_48)
ATGATTATTTTTTTGGTATTGTTTTGTGCTTCTGGCTTTGGCGCATACTG
CTGTTTTCCTCGTCCCTTGTATGTGTGTATTTTGCTGCCGAGAAATGTGG
TCGTGACGGTAGTACAGGGACGTTTCAAACCTTTTTGTTTCAAAATCACC
GGTCGATGTACACGAAGAGTAGAAATTTGGTGA
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