mRNA_P-littoralis_Contig61.57.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig61.57.3
Unique NamemRNA_P-littoralis_Contig61.57.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig61.57.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig61contigP-littoralis_Contig61:322716..329095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size805
Hectar predicted targeting categoryother localisation
Exons2
Cds size603
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791268.4333432-UTR-P-littoralis_Contig61:322715..3227941680791268.4333432-UTR-P-littoralis_Contig61:322715..322794Pylaiella littoralis U1_48UTRP-littoralis_Contig61 322716..322794 +
1680791268.4629388-UTR-P-littoralis_Contig61:328972..3290951680791268.4629388-UTR-P-littoralis_Contig61:328972..329095Pylaiella littoralis U1_48UTRP-littoralis_Contig61 328973..329095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791268.4435537-CDS-P-littoralis_Contig61:322794..3231301680791268.4435537-CDS-P-littoralis_Contig61:322794..323130Pylaiella littoralis U1_48CDSP-littoralis_Contig61 322795..323130 +
1680791268.4530582-CDS-P-littoralis_Contig61:328705..3289721680791268.4530582-CDS-P-littoralis_Contig61:328705..328972Pylaiella littoralis U1_48CDSP-littoralis_Contig61 328706..328972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig61.57.3prot_P-littoralis_Contig61.57.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig61 322795..328972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig61.57.3

>prot_P-littoralis_Contig61.57.3 ID=prot_P-littoralis_Contig61.57.3|Name=mRNA_P-littoralis_Contig61.57.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=201bp
MSSASDDGRGSKKGKGRPAGTTNNAGSLRPGPVNATNKRRKVAAIKKNKQ
AWGAFGFTSPAGDGDDGGGGGGGGGGSGGGGKASSVQPGDPSGDNSGDEE
EAELAGSIPVPEVSSMSGQAEFLASIKDTISKAAPRHKLQHPYPYNDMWV
YPPNPTTRSNIIVGHHHRRPVFVRLPESTHPCGVPDGRLPCPLCKSTPNM
*
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mRNA from alignment at P-littoralis_Contig61:322716..329095+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig61.57.3 ID=mRNA_P-littoralis_Contig61.57.3|Name=mRNA_P-littoralis_Contig61.57.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=6380bp|location=Sequence derived from alignment at P-littoralis_Contig61:322716..329095+ (Pylaiella littoralis U1_48)
AGTAATTTCCCCGCCCCGACCGTCGTGTCGGCCAACACCCGAGAGGGGAG
CTAGGACACCCAAGGCAGCAAGGGGTGCGATGTCTTCTGCGAGTGATGAC
GGGCGCGGTAGTAAGAAGGGGAAGGGGAGACCGGCAGGGACAACAAACAA
TGCAGGTTCGCTGAGACCCGGCCCGGTGAACGCCACCAACAAACGTCGGA
AGGTAGCAGCGATCAAGAAGAACAAACAGGCGTGGGGCGCGTTCGGGTTC
ACGTCGCCTGCTGGCGATGGTGATGATGGTGGTGGTGGTGGTGGTGGTGG
TGGTGGTAGTGGAGGTGGTGGTAAAGCCTCCTCGGTGCAGCCAGGCGACC
CTTCTGGTGACAACAGCGGCGACGAGGAAGAAGCCGAGCTTGCTGGATCA
ATTCCGGTGCCGGAGGTAAGATGATGTAGCTGCCTGCGAGATACCGGTGC
TATAGGATGTACTACAGCAGTACCCGCTGCTGCTGAACTAACATACATTG
ATCTATATATACATACAGCAGTAGTATTATACATACTATAATATACCAGC
GTATCTGTACAGCAGCTAGTTTAAGTCTGGTATTAATACGGCGGTACACA
ACAACAGCAGTACAACAGCAGTACTACTGCTGTATTCATGCTTTACTCGT
ACAGCAGTATATGATACAGCAATGCTTTTGTTCTGTATAAAGTTCAAAGT
ACTCGTGTATCCTCTGTTGTTCTTCATCATACTGCTGTATGGTGTACAGC
TTTACACAGCAGTCTTCTGTGTGCTGTACACAGCAAGTTCTGTGTGATGC
TTGCTTGTAGATCGATATCGTACCACAGGTACACCACGTCCGCGCTTCGC
GCTGTACACTCTCTACAACAGCAGTGCACCCTTTCTTCTGATTCAGCCTC
CTTTCTGTTTTATGTTGTTTATCTTGTTTCACTGCTGTTCCTCGTGATGG
AAACTACCAGCATGATAAGTATGATATCGTACTGTATATAATATCATATG
ATATGATAGTTATTTCTGGAGCTCCCCCCTGTGTTTTCCTGCTGGTATGT
ATCGCACTGGCGTAAACAAACGAGCATCTTTAGCGTATTCCTCATACAGA
TTTATGACGTAGAGGAACCTGGCCGACCGAACCAGATGGGTGATTGGACA
GCGGTTGCCAAAAATCAGGGCGGTACGTGGTATTGAGATGGAATGGGAAC
GTGGTACTTAGTGGTATTTAGTGGGATGGTATGGTAATGGTACCGGAATT
TTGGTCCCATCAGCAGATACCATTTAGTGACCACCACGCCGTTCGGAGAA
CCCATTAGTAAAAGGTAATGGTTCTTGAACCCTTCCCATCCCATCTTATT
TACCATCATGGCTGCTGAAGGTACCACCATTCCATCCACAACAGGCTCCT
CGCACCCATCACTCTTCCCCCCGATTCCCTACGAACACCAACACAACCCT
CTCCTCGCGCCCCCCCCCTACCCACTATGGACGTACTTTTTGAAGGAAAG
GGGTGTGTGTGGGCAAAAATGTGTGTGCATAGGGGGTAGGGGTTGACCGC
AACCCACCCCCTGCTGATTCTGTGATTTTCTTTTGAAAAAAAAAACACAA
AACACAAAACACAAAACACAACACACCAGCTGCAAAACACACCACAACAG
AACGTGCACATGAGTACCCTATCGCCGGCGATGGCGGCGGCGGATCGGAG
TCAGCAGTACCCCCAACGCCTTCATCTGGCGACCCCGACGGCGGTGTTGG
AACGAGCCCGGAGACGGCAGTGTCGGTTGTTGCTGGCACTGCTGCTGCCA
GCAGCAGCACCACCGCCGTGGCGGTCGGGGCTGGTTCAGGAAGAGAAGGA
AGACGTCTAACGTGTGGCACCACTTTGTGCAGTTCACGCCGGCCGACTCG
GATGGCAAGAACGTCAAGTGTATAGTAGAAAAATGGCTGCCCGCGTCTGG
TTTGCTGCCTGCGCGCAAGTATGTGTGTGGAGCGCGGTTCACGCGCCGCG
CCGCGGATAGGAAAACAACATCAGCGCCACGGGAACCAGTGGACTAGTCA
AGCACCTGCACAATGAGCACTCCACGGTATGGGCCGCCACGGACGATGGG
CGTGGATCAAGGGAGGCCAGAACTACCAGGGGTGCCATCCTACATGGTGA
GGTACCGGTGCGCGCTGCGCGTTGCTGCTGTGTGTGGTGCTGTTTGAAAA
AAAAAAAAAAAAAAAAAATTGCGGCAGATTTTTTTTTTCGCCGCAAAGAA
GAAAAGAAAAGTATATACGTTGAATAACATACCCCAACAGAGCTGCCGGG
GTTTTTCAGCTGCGATTTCTCTTGTTGTTGTGAGGTAGGGAGTGCATCAA
CCGGCCCTCCTCCAACCGCTCTTTGGACAGATTGAATGTTGGTGGCAGAC
TGTGATATAGAGCAGACCAAAACTATTTTTTTCCCCCCTTTCAGAACTGC
GCTGAATAAAATTTTATTTATTGATGTAAATCAGTGGCGCTTTTATCGTC
ACCACTCAAGCGATATATAAAAGGCACCATGCAGACTAACTATTAGGTGT
ATTTTATTTTCAATTAAGTTATTTATTGTTTGGGGGGACAATATATACAT
GTGTAGGTGTTTTTTTTTTAAATTATTTAATTAATTTTTGGTTTTGGGCA
GGGGATATCTTGTGTGTTTATGAAGTACCATCTCATACAATTTGACGAAT
GACATCGAACACCTGCTGCTGCTGCTATGTTGCATGTTCGTTGCAACCCT
CCAGGAAGCTCGGATCAGAAGGACGGCAAGCCTGCAGCGGGGTCACGCTC
GATCGCCCAACACTTCATCCAACCCATGACACCCACCGAGAAGAGAAAGC
ACCAGGTCCGATACGTCATCATGTGCTGCGTCGACATGCGGCCGTTCTCG
ATGGCGCATCGGGCTGGGTTCCAGTACTTCGTCGGCGGCTTGAGCCCGGC
GTACGTAACGGAGACGATACACAAGAGCACACTTTCAAACATTTTGGATG
CCTTGGCCGCCGATGTTCGCGCCAACCTCATCACGACGCTGAAGGACCAC
GTAGATTCCTGCAAGAAACTCGGGTGGGGCGGGCCCTTCTTTGGCGTGCA
GTCGGACCTAACCAGTACGCACGGCACCGAGTTCTGCACTCTCACCGTTT
CCTTCATCCCGCGGGGTCACACGGAGATGGAGCGACTGACGCTGACGACA
AAGGCGTTCCCGGGTACGCACACGGCAAGCGATGTGGACCCGTGGATCCG
TGAGGTGAGTCTCTCTATTTAGTTTTTACTCCGTTGTTTTTTTTTTAGTT
TACTCTGTTGGTTGATTGTTGATTCTAATCTGTATTTTTAGCCGTCCCGG
AGTATTTTTTCACGCGTGGCAGAACTTCTAGAAGGGATTATCATTGATAT
GAATTTCGCAGGCAATTTATTGTATTCTATTTATTTATGATCGACACCTC
TTGCGTTCGAGGACACCAATTGTCGCGTTGGTTTGTATCAACCTGTCCTC
AATCGTGCCTTCATTTCTTCTGAAAAACCCACACCCAAACCCCATGCCTG
GCATACGCTGATCGTGTTCCTTTCGCGTTGAGCAGGTTACTACCGAGTTC
TTCGCGCCTATCGTGGGAGACGCCAACGCTGAGCCAGCGAAGATCTACGT
TGCTGCCACAGTCGACCAAGGAGGCAACATGGTGAATGCGTTTGAGAGCA
TGGGCGTGCCGGTCCTGATCTGCACGGGGCATCGGCTCAACTCCGGGATC
AACTGGGGAATGGGCATCGCCGGCTCCTTCGTGAAGGCAACGCAGACGGG
CACGTGCAAAAACCCTGAGCTCCGCAACCTAACCGCTGTCATGACCGCGC
TTGCGGGGGTCTTCAGCCATTCCCCTTGCAACAACGACGCCTTCAAAAAG
CTGCAAACGGAGCTGGACGAACTGTGCACCGCTTTGGAGGTTCTCCGCCG
CAATGATACGAGGTGTGTTCTGTGTGTGGCTGTTTCTTGTTTAGACTAGC
TTGGAGTTACCTAGACCTGAGTTCTGTAATGTAGCTGAGACCCAGAAACA
CTGCCGATAGTTGTTGCGGCGAAGTATTTCCAGCCCTGTCCAAGTGCTTC
GTACGCTTGTGCTGGCTTACAGTTGCTGTTACGTTCCCATGCATGAACAC
GCCGTATTTTGTTGGTACCACCGGCACGTTGAACGATCAACTTCAACGTG
CCCACCTCCCTTTCATTCCCCTTGCAGGTGGGGGTCAGTGTATGCGATGT
TTCAGCGGGAGGTGCGCCTCTACAAGCCCATGCAGGCGTTTTTCACAGAG
AACCTGAACAAGCCGAAGATCAGCGCGCGCGCGCCTAGCCCGGCGCAGTG
GCAGGCTGCCCGTGAGGTTATCAGTGTCCTTCAAGACGCCTCACTGGTGA
GCACGCAGGTCCAGGGTGGACGACATGGCTTTGTGGGCATGGCGATCAAC
TCAATGTACGTGCTGCTGACGTCGTTGTCGGAATCGACACAGGACGTCGT
TAGCCTTGACCCTTTCGATGGCGACTCCGAAGATATCCCCGTGACGGACC
TTCTCCCGGAGGTTCAGGAGCTGCTGGAAATCCTAGTGGACGACATGGGA
TCCAGGGGCTTGGCGCGTGCTGAGAAGCCGACGGAGAAGATATGCCTGAT
GCTCGATCCGCGTTTCAAGTCCTGCTGCCTCGCTGTTTGTTCCAACGGGG
GGTACAGCCTGCAGCAGGCTGCAGCCAGCGCGGTGCGGGAGAAGTTGGGG
GGATTCTCCGGCACTGCATCTGCGAGCGCGGATGTCGGAGAAACGGGGAA
TGCCTCGGGGGGCTCTTCGGAGGCTTCTCCCGGGGCGGCACCGGAGGCGG
CAGCGGGCGTGAACCCCTCGGGCGTGAACCCCTCTGCGGGAGGCGGTGAC
CCTCCCCAGCCGGCGAAGATGTCCAGAATGGAGAGGATCAGAGCGAGTCT
AAGCACCCAGGTCTCCGGCCCCACGGGCGACGTGGATGCGGCAGAGGATC
GAGCGGACGTCGCAGAGCGCGAGTTTGCCGCCTACATGAAAGAAGCGGCC
GCCACCAACGACGCCAAGTTCGACCTACTGAAGTACTGGAATGCGCGGGG
CGTGGATGGGGTAGACGCGTCCGGGAACGTCGTAGCGCCTGCCCGCTGGC
CGCATCTGAGTTTGCTAGCACGCGTGTACGCAGGCGTAGACACCACCAGT
TGTCAAGCGGAGAGGAACTTTTCCGCCCTCAAGCAGGTCCTAAGTGACAT
GCGTGCCGGTACCCTGCCTCGTAAGATCGAGCAGATGCTCTTGCTTAGGC
TGAACAGGCACCTCATCCCAGGCTTTGCGAAAGTAGAGCAAGAGCTGGCC
GCATTGAAGGCAAGGCACGACGCAAACGCAAAGGCCGTGGTTGCCGTCCA
GCAAGCCAGGGAAGGGAGTACTGTCACCTTGAACTAGGGTCGCTGGTCTT
TGTGCTTTTGTTTTGCTTTGTTTTTGCTGTTGATTTCGTCGTTTTCGTTT
CAGCGTATCAGATGTATGTGTCTGGTACATTGGCTTGGGTTAGTTGTTGG
TGCTTGAAGGTCATTGAGTTCTAAATTCCCCCATTCCATCACTCTGTCCC
ACCAGTCACCATCCCATTCCATCCCATCAGCATCGTGCTCTCATCCCATC
CCATCCCATTAGCATCCTGCTCTCGTTCCATCCCATCCCATTAGCATCCT
GCTCTCATCCCATCCCATCCCATCCCATCATGTATGATTCCATCCCATCC
CATCGTATTACCATCAGAATGGGCGCAAATACCACCCCATTTAACCTGAT
GGGAACCCTAAAAATTTTTCCGCCTGCGGCGGGCTAAAACCCCGATGGGA
TGGTACGTGGCGCCGCAGGCGCCACGTACCGCCCTGCCAAAAATGGTTTG
ATTTAGCTTTGCTCTGTTTCGTATATACGTTGCCGATTTTTTTTCAATAA
ACCTGACCCATCCGCCCTACAAAATCATCCACATGTACAGGTGTCGTCGA
TGTCAGGACAGGCTGAATTCCTGGCGAGCATCAAGGATACTATTTCCAAG
GCGGCACCACGGCACAAGCTTCAACACCCGTACCCGTACAACGACATGTG
GGTGTACCCCCCCAATCCAACGACGAGGAGCAACATCATTGTCGGACATC
ATCATCGCCGGCCGGTGTTCGTGCGGCTCCCCGAGTCAACTCACCCTTGT
GGTGTACCTGACGGGCGGCTCCCGTGCCCGCTCTGCAAGAGCACACCAAA
CATGTGATCGTCAAGGGGTGGACGCAAAAAGGCTCTCGCAGATGCATCCT
GCGGGATAGGTGCGGCGATATGCTGGGCAAGTACTACTCCTGCAGCTGGT
GCAACGAGAGCAACAAATCGAAGCCCAAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig61:322716..329095+

>mRNA_P-littoralis_Contig61.57.3 ID=mRNA_P-littoralis_Contig61.57.3|Name=mRNA_P-littoralis_Contig61.57.3|organism=Pylaiella littoralis U1_48|type=CDS|length=603bp|location=Sequence derived from alignment at P-littoralis_Contig61:322716..329095+ (Pylaiella littoralis U1_48)
ATGTCTTCTGCGAGTGATGACGGGCGCGGTAGTAAGAAGGGGAAGGGGAG
ACCGGCAGGGACAACAAACAATGCAGGTTCGCTGAGACCCGGCCCGGTGA
ACGCCACCAACAAACGTCGGAAGGTAGCAGCGATCAAGAAGAACAAACAG
GCGTGGGGCGCGTTCGGGTTCACGTCGCCTGCTGGCGATGGTGATGATGG
TGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTGGAGGTGGTGGTAAAGCCT
CCTCGGTGCAGCCAGGCGACCCTTCTGGTGACAACAGCGGCGACGAGGAA
GAAGCCGAGCTTGCTGGATCAATTCCGGTGCCGGAGGTGTCGTCGATGTC
AGGACAGGCTGAATTCCTGGCGAGCATCAAGGATACTATTTCCAAGGCGG
CACCACGGCACAAGCTTCAACACCCGTACCCGTACAACGACATGTGGGTG
TACCCCCCCAATCCAACGACGAGGAGCAACATCATTGTCGGACATCATCA
TCGCCGGCCGGTGTTCGTGCGGCTCCCCGAGTCAACTCACCCTTGTGGTG
TACCTGACGGGCGGCTCCCGTGCCCGCTCTGCAAGAGCACACCAAACATG
TGA
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