mRNA_P-littoralis_Contig61.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig61.41.1
Unique NamemRNA_P-littoralis_Contig61.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig61.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig61contigP-littoralis_Contig61:223990..225163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size300
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791268.3846352-CDS-P-littoralis_Contig61:223989..2242441680791268.3846352-CDS-P-littoralis_Contig61:223989..224244Pylaiella littoralis U1_48CDSP-littoralis_Contig61 223990..224244 +
1680791268.400817-CDS-P-littoralis_Contig61:225118..2251631680791268.400817-CDS-P-littoralis_Contig61:225118..225163Pylaiella littoralis U1_48CDSP-littoralis_Contig61 225119..225163 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig61.41.1prot_P-littoralis_Contig61.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig61 223990..225163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig61.41.1

>prot_P-littoralis_Contig61.41.1 ID=prot_P-littoralis_Contig61.41.1|Name=mRNA_P-littoralis_Contig61.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MQAVGVVDCTDVVAEGNANLGVVAAGAGQAGDDDPSQTPAALAATAAASI
QEGTQGNKKSGAANTGPKRKYVQWTSNMEYALMAQAHADQVHTAPHGQKG
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mRNA from alignment at P-littoralis_Contig61:223990..225163+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig61.41.1 ID=mRNA_P-littoralis_Contig61.41.1|Name=mRNA_P-littoralis_Contig61.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1174bp|location=Sequence derived from alignment at P-littoralis_Contig61:223990..225163+ (Pylaiella littoralis U1_48)
ATGCAGGCTGTCGGTGTAGTGGACTGTACCGATGTTGTTGCCGAAGGGAA
CGCAAACCTGGGAGTCGTCGCTGCAGGGGCGGGGCAAGCAGGGGATGACG
ATCCATCACAGACGCCAGCGGCGCTCGCAGCTACTGCTGCTGCGTCAATC
CAAGAGGGCACACAGGGCAACAAGAAGAGCGGTGCGGCCAACACCGGGCC
GAAAAGGAAGTACGTTCAATGGACCTCCAACATGGAGTACGCCCTGATGG
CACAGGTGAATTTGATTCTATTACACATGGCCGTAGCCCGTGGCCCATAT
TCGTGGGATTTATGGCCGGTCGCCAGAGTTCAAATCTCAAAACCAGCAGC
AAGCGTATACTACTTCCTGCTGTACTATATAACTGCTGTAGTACACATAG
GCTATGACGTAGGAACGGTATGCCGTGAACACACTGTTTCAAATGTCTGG
GGAACCATACGCGCGGACAACAGTAAACTGCGCTGTACACTACGAAGCAG
CAGTATAAATTCGGGATAAATTATGTGCACACATTACACAGCATTTCAAA
TGATGTGTGGAGATTTCGTATGATATGGCACAACATGTTTCTTCGTTATT
TCTGATCAAACACTTGTCTCGTGCTGCCATAAACAGAACGCACCTGTCAA
CAACACCACACACGATACACATCAGCTTGCTTTCTAACATGTGTGTTCGT
TCTGAAATGTTCTACCGTCATATACTATTGATGGTCACTACGGCTGCTGT
ACAGCAGCGGCATGAAGTGTGCACACATGATGAAAATTCGGCACCACACC
TACCTGCCATCAACACCACACACGCAACAGATGAGTGTGCTTTGAAACAC
TTGGGTTTGTTCCCACATGTACTGCCGTCGTGCGCGATTGATGGTCACTA
CGCTTGCTGTACAGCAGCAGTATGAAAGCGCGACACACGCTACAGATGTG
GGCGTTTTGAAAAGCGTGTGTTTGCCACAAGGATGTCGAATATGCTGCCG
TCACGCGCAACCCATTTATCGGCGCGTCAACAGTCACAACCCACCACCAC
CACCACCAACACCAACACCACCAAACTCCCCTTGCCTCCGTGCGCCCCTG
TGCGGTTCCACTTCCCTGGCAAAATGAAGGCGCACGCGGATCAGGTGCAC
ACCGCACCGCATGGGCAGAAGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig61:223990..225163+

>mRNA_P-littoralis_Contig61.41.1 ID=mRNA_P-littoralis_Contig61.41.1|Name=mRNA_P-littoralis_Contig61.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig61:223990..225163+ (Pylaiella littoralis U1_48)
ATGCAGGCTGTCGGTGTAGTGGACTGTACCGATGTTGTTGCCGAAGGGAA
CGCAAACCTGGGAGTCGTCGCTGCAGGGGCGGGGCAAGCAGGGGATGACG
ATCCATCACAGACGCCAGCGGCGCTCGCAGCTACTGCTGCTGCGTCAATC
CAAGAGGGCACACAGGGCAACAAGAAGAGCGGTGCGGCCAACACCGGGCC
GAAAAGGAAGTACGTTCAATGGACCTCCAACATGGAGTACGCCCTGATGG
CACAGGCGCACGCGGATCAGGTGCACACCGCACCGCATGGGCAGAAGGGG
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