mRNA_P-littoralis_Contig609.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig609.29.1
Unique NamemRNA_P-littoralis_Contig609.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig609.29.1 vs. uniprot
Match: A0A6H5L0C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C0_9PHAE)

HSP 1 Score: 402 bits (1032), Expect = 3.550e-129
Identity = 252/440 (57.27%), Postives = 286/440 (65.00%), Query Frame = 2 
Query:   95 RRRRARAASS----RQKVILCACLGLGAQTIVPTAEAWAPAATLWY----GR-GPPTQSTSTSRRTAVRGAFSHRPPGYVGGNNNRGWQAMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPAANAIGAGVAGRRRRTGVMMSMAEDDGGTESDGYNAALGALAIASLGVLYYGLHDRAGVGIGGLDGLDTGSHSAFLKTIIDAAKAGPTAATTAAQAFLTNSVTKIEQLGPVGAVYFGLLYVLAEVLIIPALPLTTAAGYLFGVAGGTAVVLVSATVAAAISFQLGRTLLRTQVEGILEENLKFRALDKAIGKEGFKVILLLRLSPIFPFALSNYFYGVTSVDFLEYMFGTLIGFAPGSLAYVYTGTLGKAMTDGASMTLPWYGYVAGGALVAFLLKTVGEIATTAIEEMEEAE 1387
            RRRR+R A S    RQKV+LCACLGLGAQ+IVP AEAW PAA        GR  PP   T      A  G FS+  P    G+N  G Q  +                                                    G+    A              MMSMAE+D GT+S G+NA LGA+A+A LG LYYGLHD    G GG      G  SA +++ ++ AKAG +A +TA QAFL++SVTK+E+LGP+G VYFGLLYVLAEVLIIPA+PLT AAG+LFG AGGTAVVL SAT+AAAISFQLGRTLLR QVEG+LEEN KFRALDKAI KEGFKVILLLRLSPIFPFALSNY YGVTSVDFLEYM GTL+GF PG+LAYVY GTLGK +TDG    LPWYGYVAG AL A+LLKTVGEIAT A+EEMEEA+
Sbjct:    9 RRRRSRPACSWQSRRQKVMLCACLGLGAQSIVPAAEAWVPAAPALLVQQQGRVAPPPTKTMHVGVGARGGTFSYHHPSQ--GSNRLGGQQQQRQHCRRLAFAPISSQAWGIERTFGQSALSSRWT-------------------GQGVVVANXXXXXXXXXXXXXMMSMAEEDSGTKSQGFNAMLGAVALAGLGALYYGLHDHTLGGGGG------GPFSATVESAVETAKAGHSAPSTAVQAFLSSSVTKVEELGPLGVVYFGLLYVLAEVLIIPAIPLTAAAGFLFGAAGGTAVVLTSATIAAAISFQLGRTLLRQQVEGLLEENPKFRALDKAIAKEGFKVILLLRLSPIFPFALSNYLYGVTSVDFLEYMMGTLLGFFPGTLAYVYGGTLGKVVTDGGGTGLPWYGYVAGAALTAYLLKTVGEIATAAVEEMEEAD 421
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BLAST of mRNA_P-littoralis_Contig609.29.1 vs. uniprot
Match: A0A7S1FUG6_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUG6_9STRA)

HSP 1 Score: 229 bits (585), Expect = 2.990e-66
Identity = 124/200 (62.00%), Postives = 155/200 (77.50%), Query Frame = 2 
Query:  791 QAFLTNSVTKIEQLGPVGAVYFGLLYVLAEVLIIPALPLTTAAGYLFGVAGGTAVVLVSATVAAAISFQLGRTLLRTQVEGILEENLKFRALDKAIGKEGFKVILLLRLSPIFPFALSNYFYGVTSVDFLEYMFGTLIGFAPGSLAYVYTGTLGKAMTDGASMTLPWYGYVAGGALVAFLLKTVGEIATTAIEEMEEAEK 1390
            Q  LT++V +IE  G +G +YFG++Y +AE+L IPA+PLT +AGYLFGV  GTAVVLV+A+VAA++SF LGR  LR  VE ILE+N +F+A+D AIGKEGFK++LLLRLSPIFPFALSNY YGVTSV F  Y +GT++GFAPG+LAYVYTG  GKA+T  A M  PWY Y  G AL A  +K + +IAT  IE+ME  E+
Sbjct:   25 QQLLTDAVVQIEAAGAMGYLYFGVIYTIAEILAIPAIPLTASAGYLFGVLPGTAVVLVAASVAASVSFLLGRYALRGAVEKILEDNPRFKAMDAAIGKEGFKLMLLLRLSPIFPFALSNYLYGVTSVRFWPYFWGTMLGFAPGTLAYVYTGEFGKALTMDAGMAAPWYIYAGGLALGACGIKIIADIATRTIEDMEAMEE 224
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BLAST of mRNA_P-littoralis_Contig609.29.1 vs. uniprot
Match: A0A7S1FUT1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUT1_9STRA)

HSP 1 Score: 229 bits (585), Expect = 2.030e-64
Identity = 124/200 (62.00%), Postives = 155/200 (77.50%), Query Frame = 2 
Query:  791 QAFLTNSVTKIEQLGPVGAVYFGLLYVLAEVLIIPALPLTTAAGYLFGVAGGTAVVLVSATVAAAISFQLGRTLLRTQVEGILEENLKFRALDKAIGKEGFKVILLLRLSPIFPFALSNYFYGVTSVDFLEYMFGTLIGFAPGSLAYVYTGTLGKAMTDGASMTLPWYGYVAGGALVAFLLKTVGEIATTAIEEMEEAEK 1390
            Q  LT++V +IE  G +G +YFG++Y +AE+L IPA+PLT +AGYLFGV  GTAVVLV+A+VAA++SF LGR  LR  VE ILE+N +F+A+D AIGKEGFK++LLLRLSPIFPFALSNY YGVTSV F  Y +GT++GFAPG+LAYVYTG  GKA+T  A M  PWY Y  G AL A  +K + +IAT  IE+ME  E+
Sbjct:  163 QQLLTDAVVQIEAAGAMGYLYFGVIYTIAEILAIPAIPLTASAGYLFGVLPGTAVVLVAASVAASVSFLLGRYALRGAVEKILEDNPRFKAMDAAIGKEGFKLMLLLRLSPIFPFALSNYLYGVTSVRFWPYFWGTMLGFAPGTLAYVYTGEFGKALTMDAGMAAPWYIYAGGLALGACGIKIIADIATRTIEDMEAMEE 362
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BLAST of mRNA_P-littoralis_Contig609.29.1 vs. uniprot
Match: A0A7S4I716_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I716_9STRA)

HSP 1 Score: 226 bits (575), Expect = 7.260e-63
Identity = 117/199 (58.79%), Postives = 152/199 (76.38%), Query Frame = 2 
Query:  794 AFLTNSVTKIEQLGPVGAVYFGLLYVLAEVLIIPALPLTTAAGYLFGVAGGTAVVLVSATVAAAISFQLGRTLLRTQVEGILEENLKFRALDKAIGKEGFKVILLLRLSPIFPFALSNYFYGVTSVDFLEYMFGTLIGFAPGSLAYVYTGTLGKAMTDGASMTLPWYGYVAGGALVAFLLKTVGEIATTAIEEMEEAEK 1390
            A L   V  +E +GP G +YFG++Y +AE+L IPA+PLT +AGYLFGV  GTAVVL SA++AAAISF +GRTLLRT VE +LE+  KF+ +DKAIG+EGFK++LLLRLSPIFPFALSNY YG TS+ F  Y FGT++GF PG++AYVYTG +GKA+T  ++   PWY Y  G  L+A  LK V ++AT  IE ++E ++
Sbjct:  181 ASLEAVVKSVEAMGPSGFLYFGIIYTVAEILAIPAIPLTASAGYLFGVTEGTAVVLASASIAAAISFIIGRTLLRTYVESVLEDYPKFKKIDKAIGREGFKLMLLLRLSPIFPFALSNYLYGATSIGFWPYFFGTMLGFTPGTIAYVYTGEIGKALTLDSATAEPWYVYAGGMTLLAGCLKVVADVATGIIENLDEEDE 379
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BLAST of mRNA_P-littoralis_Contig609.29.1 vs. uniprot
Match: A0A7R9WRQ5_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WRQ5_9STRA)

HSP 1 Score: 220 bits (561), Expect = 2.930e-62
Identity = 112/194 (57.73%), Postives = 150/194 (77.32%), Query Frame = 2 
Query:  800 LTNSVTKIEQLGPVGAVYFGLLYVLAEVLIIPALPLTTAAGYLFGVAGGTAVVLVSATVAAAISFQLGRTLLRTQVEGILEENLKFRALDKAIGKEGFKVILLLRLSPIFPFALSNYFYGVTSVDFLEYMFGTLIGFAPGSLAYVYTGTLGKAMTDGASMTLPWYGYVAGGALVAFLLKTVGEIATTAIEEMEE 1381
            L   V  +  +GP+GAVYFG+ Y +AE+L IPA+PLT +AGYLFG   GT VVLVSA++AAAISF +GRTLLR  VEG+L++  KF  +DKAIGKEGFK++ LLRLSP+FPFALSNY YG +S++F  + +GTL+GFAPG++AYVYTG +GKA+T   S   PWY YV G AL++ L+K + + AT  ++E+++
Sbjct:   73 LERVVDAVASMGPLGAVYFGVAYTIAEILAIPAIPLTASAGYLFGPVQGTGVVLVSASIAAAISFLIGRTLLRDYVEGVLQDFPKFAKIDKAIGKEGFKLMFLLRLSPVFPFALSNYLYGASSINFSAFFWGTLLGFAPGTMAYVYTGYVGKALTTEGSEVYPWYFYVGGLALLSGLIKVLADTATRIVDELDD 266
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BLAST of mRNA_P-littoralis_Contig609.29.1 vs. uniprot
Match: A0A835ZF34_9STRA (Snare associated Golgi protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF34_9STRA)

HSP 1 Score: 214 bits (545), Expect = 5.250e-61
Identity = 114/187 (60.96%), Postives = 142/187 (75.94%), Query Frame = 2 
Query:  821 IEQLGPVGAVYFGLLYVLAEVLIIPALPLTTAAGYLFGVAGGTAVVLVSATVAAAISFQLGRTLLRTQVEGILEENLKFRALDKAIGKEGFKVILLLRLSPIFPFALSNYFYGVTSVDFLEYMFGTLIGFAPGSLAYVYTG-TLGKAMTDGASMTLPWYGYVAGGALVAFLLKTVGEIATTAIEEME 1378
            I+  GP+G +YFG LYV+AEVL IPALPLT ++GYLFG+ GGT VV+ SAT+AA ISF LGRT LR  VE +L +N KF+A+D AIG+EGFK+ILLLRLSPIFPFA+SNY YG+TSV F EY+  +++GF PG++AYVY G  LG  +  G    LPWYGY  G   VA  +K VG+IAT A+ E+E
Sbjct:    2 IQSAGPMGYLYFGALYVIAEVLAIPALPLTASSGYLFGLVGGTTVVICSATIAAGISFLLGRTFLRKWVEELLGDNAKFKAIDSAIGREGFKIILLLRLSPIFPFAISNYLYGITSVPFWEYLGASMLGFLPGTIAYVYGGGQLGSLVDGGDGGGLPWYGYALGLVAVAATIKLVGDIATKAVAEIE 188
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BLAST of mRNA_P-littoralis_Contig609.29.1 vs. uniprot
Match: A0A7S0CCP1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CCP1_9STRA)

HSP 1 Score: 213 bits (542), Expect = 1.400e-60
Identity = 109/194 (56.19%), Postives = 146/194 (75.26%), Query Frame = 2 
Query:  806 NSVTKIEQLGPVGAVYFGLLYVLAEVLIIPALPLTTAAGYLFGVAGGTAVVLVSATVAAAISFQLGRTLLRTQVEGILEENLKFRALDKAIGKEGFKVILLLRLSPIFPFALSNYFYGVTSVDFLEYMFGTLIGFAPGSLAYVYTGTLGKAMTDGASMTLPWYGYVAGGALVAFLLKTVGEIATTAIEEMEEAE 1387
             +VT+I+ +GP G  YFG +Y +AE+L IPA+PLT +AGYLFGV  GT +VL+SA++AA+ISF +GRTLLR+ VEGIL E  K + LD+AI  +GFK++LL+R++PIFPFALSNY YGVTSV F  Y +GT++GFAPG+ AYVY+G +GK +T G     PWY Y  G AL +  LK  G+IA+  I+ +E+ E
Sbjct:    2 ETVTQIQDMGPSGVAYFGFIYTIAEILAIPAIPLTASAGYLFGVRDGTLIVLLSASIAASISFFIGRTLLRSYVEGILGEYPKLQKLDRAISSQGFKIMLLVRIAPIFPFALSNYLYGVTSVKFWPYFWGTMLGFAPGTFAYVYSGVVGKILTSGDDAAQPWYVYAGGLALFSGFLKIGGDIASDIIDNIEDEE 195
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BLAST of mRNA_P-littoralis_Contig609.29.1 vs. uniprot
Match: A0A7S2K1V4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1V4_9STRA)

HSP 1 Score: 214 bits (545), Expect = 3.180e-59
Identity = 108/174 (62.07%), Postives = 143/174 (82.18%), Query Frame = 2 
Query:  800 LTNSVTKIEQLGPVGAVYFGLLYVLAEVLIIPALPLTTAAGYLFGVAGGTAVVLVSATVAAAISFQLGRTLLRTQVEGILEENLKFRALDKAIGKEGFKVILLLRLSPIFPFALSNYFYGVTSVDFLEYMFGTLIGFAPGSLAYVYTGTLGKAMTDGASMTLPWYGYVAGGALV 1321
            L N V+++E +G +G +YFG+ Y +AE+L IPA PLT +AGYLFG+ GGT +VL+SA++AA+ISF +GRT LR+ VEG+LE+  KF+A+DKAIGKEGFK+ILLLRLSP+FPFALSNY YGVTSV F+EY +GTL+GF PG++AYVY+G +GKA+T  +    PWY Y AG A++
Sbjct:  156 LENIVSQVETMGNLGFLYFGIFYTIAEILAIPAFPLTCSAGYLFGLQGGTTIVLLSASIAASISFLIGRTALRSYVEGLLEKYPKFKAMDKAIGKEGFKLILLLRLSPLFPFALSNYLYGVTSVRFVEYFWGTLLGFLPGTMAYVYSGDVGKALTLDSGNAQPWYVYAAGLAVI 329
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BLAST of mRNA_P-littoralis_Contig609.29.1 vs. uniprot
Match: A0A448YYH2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYH2_9STRA)

HSP 1 Score: 215 bits (548), Expect = 9.480e-59
Identity = 141/277 (50.90%), Postives = 175/277 (63.18%), Query Frame = 2 
Query:  581 DDGGTES------DGYNAALGALAIASLGVLYYGLHDRAGVGIGGLDGLDTGSHSAFLKT-IIDAAKAGPTAATTAAQAFLTNSVTKIEQLGPVGAVYFGLLYVLAEVLIIPALPLTTAAGYLFGVAGGTAVVLVSATVAAAISFQLGRTLLRTQVEGILEENLKFRALDKAIGKEGFKVILLLRLSPIFPFALSNYFYGVTSVDFLEYMFGTLIGFAPGSLAYVYTGTLGKAMT-DGASMTLPWYGYVAGGALVAFLLKTVGEIATTAIEEMEEAE 1387
            D GGTE+      DG +    ALA         GL    G+ +    G D    S+ L T    AA AG T +  +A   L   V   E +GP+G  YFG+ Y +AE+L IPA+PLT +AGYLFG   GTAVVL+SA+VAA +SF +GRT LR  VEG+LEEN +F  LDKAIG+EGFK++LLLRLSPIFPFALSNY YG TS++F  +  GTL+GFAPG++AYVYTG +GKA+T D      PWY Y  G AL A  LK V + AT  + E+E  E
Sbjct:  129 DQGGTETADAAETDGTSVPAVALA---------GLAAATGLLVLVSQGADPTDPSSVLATGSALAAXAGETLSDPSAA--LDRVVELTESMGPLGVAYFGVAYCIAEILAIPAIPLTASAGYLFGPVQGTAVVLLSASVAAGVSFWIGRTFLREYVEGLLEENPRFGKLDKAIGREGFKLMLLLRLSPIFPFALSNYLYGATSINFSAFFGGTLLGFAPGTIAYVYTGYVGKALTGDAGGDAYPWYVYGGGLALFAAFLKVVADEATRVVREIEAEE 394
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BLAST of mRNA_P-littoralis_Contig609.29.1 vs. uniprot
Match: K0R4C6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R4C6_THAOC)

HSP 1 Score: 206 bits (523), Expect = 6.210e-56
Identity = 102/177 (57.63%), Postives = 135/177 (76.27%), Query Frame = 2 
Query:  851 YFGLLYVLAEVLIIPALPLTTAAGYLFGVAGGTAVVLVSATVAAAISFQLGRTLLRTQVEGILEENLKFRALDKAIGKEGFKVILLLRLSPIFPFALSNYFYGVTSVDFLEYMFGTLIGFAPGSLAYVYTGTLGKAMTDGASMTLPWYGYVAGGALVAFLLKTVGEIATTAIEEMEE 1381
            YFG+ YVLAE+L IPA PLT A+GYLFG   GTA  L SA +AA++SF +G+TLLR  VE +L+EN KFR++D+AI KEGFK+++LLRLSP+FPFALSNY YG +S+ F  Y FGT++GFAPG+ AYVY G +GK +T G     PWY Y  G A++  L+K +G++AT+ I+ ME+
Sbjct:  168 YFGIFYVLAEILAIPAFPLTAASGYLFGAFPGTATCLFSAAIAASVSFVIGKTLLRGYVEDVLDENPKFRSMDRAIEKEGFKLMVLLRLSPLFPFALSNYLYGASSIRFPSYFFGTILGFAPGTFAYVYGGVIGKELTVGGDSAQPWYVYAGGMAVIVGLIKVIGDVATSVIDAMED 344
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig609.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0C0_9PHAE3.550e-12957.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1FUG6_9STRA2.990e-6662.00Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S1FUT1_9STRA2.030e-6462.00Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S4I716_9STRA7.260e-6358.79Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7R9WRQ5_9STRA2.930e-6257.73Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A835ZF34_9STRA5.250e-6160.96Snare associated Golgi protein-domain-containing p... [more]
A0A7S0CCP1_9STRA1.400e-6056.19Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2K1V4_9STRA3.180e-5962.07Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A448YYH2_9STRA9.480e-5950.90Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
K0R4C6_THAOC6.210e-5657.63Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig609contigP-littoralis_Contig609:67846..72740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0R4C6
PFAMsSNARE_assoc
Model size2480
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons5
Evalue8.99e-60
EggNOG OGsCOG0398@1|root,KOG3140@2759|Eukaryota,2XF17@2836|Bacillariophyta
Ec32 ortholog descriptionTransmembrane protein Tvp38/TMEM64-like
Ec32 orthologEc-16_003750.1
DescriptionSNARE associated Golgi protein
Cds size1320
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig609.29.1prot_P-littoralis_Contig609.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig609 67919..71653 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791267.217824-UTR-P-littoralis_Contig609:67845..679181680791267.217824-UTR-P-littoralis_Contig609:67845..67918Pylaiella littoralis U1_48UTRP-littoralis_Contig609 67846..67918 +
1680791267.2898784-UTR-P-littoralis_Contig609:71653..727401680791267.2898784-UTR-P-littoralis_Contig609:71653..72740Pylaiella littoralis U1_48UTRP-littoralis_Contig609 71654..72740 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791267.22862-CDS-P-littoralis_Contig609:67918..679781680791267.22862-CDS-P-littoralis_Contig609:67918..67978Pylaiella littoralis U1_48CDSP-littoralis_Contig609 67919..67978 +
1680791267.2384732-CDS-P-littoralis_Contig609:68659..691891680791267.2384732-CDS-P-littoralis_Contig609:68659..69189Pylaiella littoralis U1_48CDSP-littoralis_Contig609 68660..69189 +
1680791267.2521052-CDS-P-littoralis_Contig609:70133..704871680791267.2521052-CDS-P-littoralis_Contig609:70133..70487Pylaiella littoralis U1_48CDSP-littoralis_Contig609 70134..70487 +
1680791267.265654-CDS-P-littoralis_Contig609:70789..710181680791267.265654-CDS-P-littoralis_Contig609:70789..71018Pylaiella littoralis U1_48CDSP-littoralis_Contig609 70790..71018 +
1680791267.2750146-CDS-P-littoralis_Contig609:71506..716531680791267.2750146-CDS-P-littoralis_Contig609:71506..71653Pylaiella littoralis U1_48CDSP-littoralis_Contig609 71507..71653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig609.29.1

>prot_P-littoralis_Contig609.29.1 ID=prot_P-littoralis_Contig609.29.1|Name=mRNA_P-littoralis_Contig609.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=440bp
MDLSCTLRRRRARAASSRQKVILCACLGLGAQTIVPTAEAWAPAATLWYG
RGPPTQSTSTSRRTAVRGAFSHRPPGYVGGNNNRGWQAMRAMPAVAGVSG
GGGGGSGWGTTAPTAVGAVTFRQKQQQQSVRSAFSSRSSSSSGRPAANAI
GAGVAGRRRRTGVMMSMAEDDGGTESDGYNAALGALAIASLGVLYYGLHD
RAGVGIGGLDGLDTGSHSAFLKTIIDAAKAGPTAATTAAQAFLTNSVTKI
EQLGPVGAVYFGLLYVLAEVLIIPALPLTTAAGYLFGVAGGTAVVLVSAT
VAAAISFQLGRTLLRTQVEGILEENLKFRALDKAIGKEGFKVILLLRLSP
IFPFALSNYFYGVTSVDFLEYMFGTLIGFAPGSLAYVYTGTLGKAMTDGA
SMTLPWYGYVAGGALVAFLLKTVGEIATTAIEEMEEAEK*
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mRNA from alignment at P-littoralis_Contig609:67846..72740+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig609.29.1 ID=mRNA_P-littoralis_Contig609.29.1|Name=mRNA_P-littoralis_Contig609.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4895bp|location=Sequence derived from alignment at P-littoralis_Contig609:67846..72740+ (Pylaiella littoralis U1_48)
ATCATCATCATCCGATCGAATGTTTGATGCGTGCTCCAAGACATCGAAAT
CCTCTCAAACGTAGGGAGCAGCAATGGACCTATCATGTACGCTACGAAGG
CGGCGCGCACGCGCTGCGAGCTCAAGACAAAAGGTGGGGCCCGCAGCTCC
ATTTGGTGTTTTCGTTGTCGGTCGACGAAACAAACGACCACGTACTTTTT
TGTGCACACACGTTTTGCACGTCATCGAGATTTCGAGATTTCTCTAATAT
GTATCATACCCACACACCTCTGACGAGACTGCTGTCTTGGCTTTGCTCAG
TACCAGGCGGCCAAATATCTAGCTTTTGAGTTGACCCAAGGAAGGCCGTC
TAGTTGCGAGAGTTGACCCGTGGCCATATTCCCCCACACTGCTCCTAGGT
TTGCTGGGTTTATCCCTAACGACGCTCACAAAGTCTTGTTGCAAGACACA
TACTTGGTAATTGCCAGATGGTACACTGCTGTCTATGTTAGCACCAACAA
CAGCGGCAGTACAGCAGTCAGATCATGCGTATCGACTACACTACCGCAGC
TCCCCGTGAACTTGCTGCACGTAGGCATACATTCGAACAGCTCGTGTTGA
CATGGGGTGAGGTCAGTGCCTTAGTACGTTCAAGTTACATGATGGGACAT
GGATACAACATCCAAACATGCACAGCCAGCAGGAGCCAGTAGGGACACGG
ACTACGCTACTACAAGGTAGGTGTCTTCGCCCCCTCGCGCAGCCCCCCCC
CCCCGCGCGCAACTGCCCTGTTACAACAGCACCACCGACCTGCTTTCTGC
GCACGATTACATAGGTGATACTCTGCGCCTGTCTAGGGCTCGGCGCGCAA
ACCATCGTCCCTACCGCCGAAGCATGGGCTCCAGCAGCGACCCTTTGGTA
CGGCCGAGGACCTCCAACTCAGTCGACATCAACATCAAGAAGAACAGCAG
TTCGCGGGGCATTTTCCCATCGCCCCCCTGGCTACGTCGGCGGTAACAAC
AACAGAGGATGGCAGGCGATGCGAGCAATGCCTGCAGTTGCCGGCGTCAG
TGGCGGCGGTGGCGGCGGCAGCGGTTGGGGCACTACCGCACCGACAGCAG
TAGGAGCAGTAACATTCCGGCAAAAGCAGCAGCAGCAGTCCGTGCGGTCG
GCTTTTTCGTCGCGCTCTTCGTCTTCGTCCGGCCGACCTGCCGCCAACGC
GATCGGTGCGGGAGTTGCCGGCAGGAGGAGACGGACGGGGGTGATGATGT
CGATGGCGGAGGACGACGGCGGGACGGAAAGCGACGGGTACAATGCGGCA
CTTGGCGCCCTCGCCATCGCGAGCTTGGGTGTTCTTTATTACGGGTAAGA
GCTGTCATAATGCTGTAAAGCAAAGAGGCGGGGGGGAATACCCGAACTTC
TGCTGCTGCATGATACGGAAGTACAAAGTTTTATCATATGCAAGCACAGT
TGAGCGCCTTGAGCGCCTCCAGGCACAATGCGTGTGATCGTTCTAAACAA
TGACCGCACAGTAATTCCTCTCGTGTGTACACATGTACAAACATGCACAT
ATGCATCACACATGATGCGTATTTTTCATAAAAACATTCAGCAATGCACC
GTATATATCTGCTGCAGCAAGGGTTGTACGAGAGCAGTTTTGTTGGGTTC
ACTGCTTTTTTACTCGATCCGGGAATATGCTGTCGGCTTCGCGATTTGGT
ATCGCAGAACTTACCCACGGATGTTGTTTCTTGTGCATGCTTATTTTTCA
TGTGCTGCCGTACTGCTATATTGTTTTGTTTGGTTTGAGTACTCCACCGG
TCATGGGATGGAAGCCCACTGCTGTTGTAATGGCGTCGCGCAGTGCTGTC
GGGGAGAGAAGTACAACGTCCACATATTTTTCCGATACGGGTGCTGTTTT
CTCACACCCGTTAGTGTCGAAAGTAAAGGTGGTCACCCTTCTCATTGTAG
TATACTTGGTCGGTGTTACTCATGCCACACCAGGTAGTTTTAACACACGG
GTAAAAACTCTACTCCGCAACGATAATTTTTCATTTTTACCTAACCCACT
CGCTGCAACAGCACGTGGCACCTGATAGGCTAACTTGTAGAAGAAATCTT
CTGCGTTTCTCAGGGAAATATCAGAAGAATATCCTGGCGTGGCAATGTCG
TGAAAGTTTGTGCCATTCCTTCCAAAAGCTAGGACACGCAAGCTCTTGCC
AAACTGAGCTTTTATTTCTCCCTTCAGTGGTGAGTTTGCTGTACTCTGCG
TGCTTACCTACCTACCCTTTTTTTTACCACCACCTCAGGTTGCACGACCG
AGCCGGTGTCGGCATCGGCGGCCTTGACGGGCTGGACACCGGCTCCCACT
CGGCCTTTCTCAAAACCATCATCGACGCGGCGAAGGCGGGCCCCACCGCG
GCCACCACGGCAGCCCAAGCCTTCCTCACGAACAGCGTGACCAAGATCGA
GCAGCTGGGGCCCGTGGGAGCCGTGTACTTCGGGCTGCTGTACGTGCTTG
CGGAGGTGTTGATCATTCCCGCGCTGCCGCTCACGACGGCGGCGGGGTAC
CTCTTTGGGGTGGCGGGGGGAACGGCCGTGGTCCTGGTCAGTGCGACTGT
GGCCGCGGCGATTTCTTTCCAGCTCGGGCGCACTTTACTACGGTGAGCGT
GTGCGGTCGACCTCATGGAGGGGGTCGTAGGCTATAAAGCCGGGGGGGGG
GGGGGGGAGGCGCACGTGTATAAAAGCGGGACACACACCGTCCGTAGTTG
GTTACTTGCCGTTGTCGTTGTCCTGCCTTGGGCGTGCTCGTGCTTGCCCT
GTACTCTAGCCACAGCGCTCGTTCGATGACCCACATTGCCGGACACGTGA
GCTGTGAGCAACAACTCAACAGATGAGATTGGGCGCTCACAACCAGCCGC
CCGCCACTAACGTTATTGTCGCTCAACAATATGACGCAAAACAGGACGCA
GGTGGAAGGTATCCTTGAGGAGAATCTCAAGTTCAGGGCGCTGGACAAGG
CCATTGGGAAGGAGGGTTTCAAGGTCATCTTGCTCCTCAGACTAAGCCCC
ATCTTCCCCTTCGCCCTCAGCAACTACTTCTACGGAGTCACGTCGGTGGA
CTTTTTGGAGTACATGTTCGGCACACTTATCGGGTTCGCTCCCGGAAGTC
TGGCCTACGTTTACACCGGAACCGTGAGTTATTTTTGTTCTCGGTGTTGA
TTTTTTTGCCGTCGTTTTTTGGCGTTGCTGTTCCTGCCACCACTGTTGGT
GTTGGTCCTTTATGGCGGTGGTCATTGGGTATGGACGCGTACAGTAGTAG
AGAGCATATTCTGGGGCTGCTCTCGTTTCTGTTTCTTCGGCGGTGCTCGT
TGCCGTCCCTCGTGCCACATGCACACGCAAAGCACGCATCTAGGGAAAGC
CCTTGGCACGAACGTCGTCGTACAAACGTCGCGGCAGCAGCACGCATCCA
AACAGCTGTTGAGTTCCACTGGTTGGGATCTTCGGCTTCCTAGTTGACAA
GACAACGTTGCCGTGCTTTCATATCCCCCCCCCCGTTCCTATCTCGCGCC
GTTTTCTTTTCCGTCTTTCGCTCACCTTTTCGAACACCGCTCGCTTTTCA
CCGGAAAAAAAATGCGTACACGTACACGCACACCAACATTAAAACCGAAA
AATCAAAACAGCTCGGGAAGGCGATGACAGACGGAGCAAGCATGACTCTC
CCTTGGTACGGATACGTCGCTGGGGGCGCGCTCGTAGCTTTCCTTCTCAA
GACAGTGGGAGAAATCGCGACGACCGCTATCGAAGAGATGGAGGAGGCAG
AAAAGTGAAACAGCCCTGCCATTCACGGCAGGCATGAGGCATCCCATCGA
GAGAGGTGCGGGGCGGAGTTTTGAACTACAGGGGGGCAGCCGAGAGGAAA
ACGGGGGAGGGGGCGCTGGGTGGGCATGGCGCAGAATTCAAACCGGAGGT
GTTTGAATGGATGGCACGTTCCGGACATTTTTCTGGAAGAGGAGGGGGTG
CAGGGGGTTAGAACCACCGCGGACGCCGCCTGGGGGATCGGGATAATAGT
CTGCGTGTTGAATTGTTTCGGCGAGTGAATTGCCTTCGTTTTTGCTGTAG
GTTTGGTGGTGTATTTTTTTAGTTTGTTAACGCCGTTTGAGTCTATGTGT
GATCGTGTGCACGTAATTTACCTTCACCACCATGATGGGGCATGAACATC
CTAGGTCGAACCGTGTGTTGTTTTTGGGGGACGGGGCTTGCAATGCTTTG
GTGTGTTTTGAGTTTTGTAGAGAGACAGCTTGAAGAGCAGACGCAGTGAT
GAGTGCTTTTACCTCGGAGGCGCAGCAGGTGAAGCGGTCGCTCTCTTCCT
GGTTTCTTTTCTTATTTCTTGCGTATGACTCCGTGTGTATCGCACGGGGG
CTTGCAGGAGCCGTTTGTGTTGCGGTGTGGAGTGCAGCGGGGGAGCGCCT
TTCTTACTTTATATCTTCAGCATTTTTATCGCTTTTGCACTTCTTGTTCT
TGAACGCGCTTTGCTCGTTTCGCCGTCTCCGATTGAATCCCTCTGCCGCC
TTAAACCACGTGGTGTGCCGGTGGACACTGTCGTGAGTGAGGCACGACAG
GGGGAAGGTGGTAGGGTGCGTCCCCTTGGCAGAGTCCGTCGCAGCCTGCT
TCACTAGAGCCTTCATGTCAAACCAACCCCACTAAAGCAGTGCCGTACAG
ATGGGGACGGGGTTATTTTCTCGAAAACTCCCTCTTGCATACTTTCCTCT
TAACGATTAAAGGGATCATCTTTCATTACTTCAATCTCGGTCGCCCCGGT
GGACTAGTGGTCCCTCGTTATCCACTAGATGCAGAGGAACGGGGGTTCGA
TTCCCGGTGAATGTGTTCCTTTGCTACTTTGAAAGCGGCTATGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig609:67846..72740+

>mRNA_P-littoralis_Contig609.29.1 ID=mRNA_P-littoralis_Contig609.29.1|Name=mRNA_P-littoralis_Contig609.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1320bp|location=Sequence derived from alignment at P-littoralis_Contig609:67846..72740+ (Pylaiella littoralis U1_48)
ATGGACCTATCATGTACGCTACGAAGGCGGCGCGCACGCGCTGCGAGCTC
AAGACAAAAGGTGATACTCTGCGCCTGTCTAGGGCTCGGCGCGCAAACCA
TCGTCCCTACCGCCGAAGCATGGGCTCCAGCAGCGACCCTTTGGTACGGC
CGAGGACCTCCAACTCAGTCGACATCAACATCAAGAAGAACAGCAGTTCG
CGGGGCATTTTCCCATCGCCCCCCTGGCTACGTCGGCGGTAACAACAACA
GAGGATGGCAGGCGATGCGAGCAATGCCTGCAGTTGCCGGCGTCAGTGGC
GGCGGTGGCGGCGGCAGCGGTTGGGGCACTACCGCACCGACAGCAGTAGG
AGCAGTAACATTCCGGCAAAAGCAGCAGCAGCAGTCCGTGCGGTCGGCTT
TTTCGTCGCGCTCTTCGTCTTCGTCCGGCCGACCTGCCGCCAACGCGATC
GGTGCGGGAGTTGCCGGCAGGAGGAGACGGACGGGGGTGATGATGTCGAT
GGCGGAGGACGACGGCGGGACGGAAAGCGACGGGTACAATGCGGCACTTG
GCGCCCTCGCCATCGCGAGCTTGGGTGTTCTTTATTACGGGTTGCACGAC
CGAGCCGGTGTCGGCATCGGCGGCCTTGACGGGCTGGACACCGGCTCCCA
CTCGGCCTTTCTCAAAACCATCATCGACGCGGCGAAGGCGGGCCCCACCG
CGGCCACCACGGCAGCCCAAGCCTTCCTCACGAACAGCGTGACCAAGATC
GAGCAGCTGGGGCCCGTGGGAGCCGTGTACTTCGGGCTGCTGTACGTGCT
TGCGGAGGTGTTGATCATTCCCGCGCTGCCGCTCACGACGGCGGCGGGGT
ACCTCTTTGGGGTGGCGGGGGGAACGGCCGTGGTCCTGGTCAGTGCGACT
GTGGCCGCGGCGATTTCTTTCCAGCTCGGGCGCACTTTACTACGGACGCA
GGTGGAAGGTATCCTTGAGGAGAATCTCAAGTTCAGGGCGCTGGACAAGG
CCATTGGGAAGGAGGGTTTCAAGGTCATCTTGCTCCTCAGACTAAGCCCC
ATCTTCCCCTTCGCCCTCAGCAACTACTTCTACGGAGTCACGTCGGTGGA
CTTTTTGGAGTACATGTTCGGCACACTTATCGGGTTCGCTCCCGGAAGTC
TGGCCTACGTTTACACCGGAACCCTCGGGAAGGCGATGACAGACGGAGCA
AGCATGACTCTCCCTTGGTACGGATACGTCGCTGGGGGCGCGCTCGTAGC
TTTCCTTCTCAAGACAGTGGGAGAAATCGCGACGACCGCTATCGAAGAGA
TGGAGGAGGCAGAAAAGTGA
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