mRNA_P-littoralis_Contig609.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig609.28.1
Unique NamemRNA_P-littoralis_Contig609.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig609.28.1 vs. uniprot
Match: D8LGE4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE4_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 1.460e-63
Identity = 112/171 (65.50%), Postives = 137/171 (80.12%), Query Frame = 1 
Query:    1 DQQQGEGGEDGAALAQESTTLRWEAHGMQGATIALNLRFDDTVRTLESRGNDREAKEVMLRLAKEYKTLNDGLVSRLARLSVINRTMVEILHKSQDGKAALMMRKAAELLVKGLANAEEEVHSIRATVVEVEAQRDHYKGLLAKTNSELETSRAYAQMSKVIGQEACAASS 513
            D  QG+    G  L QEST LRWE H +QG+ I L+LRF+DT RTLES+G DREA+  MLRLAKE+K LND L ++LAR+S+INRT+VEIL KS+DG+AALMMRKAAELLVKGLANAEEEV S++A   E+E QRDHYK LLA+TNSEL+ SRA+AQ+S+ +G E   +SS
Sbjct:    5 DHPQGQTPAGGEGLVQESTDLRWEGHRLQGSHIELSLRFEDTTRTLESKG-DREARAAMLRLAKEFKQLNDVLAAKLARISMINRTLVEILRKSEDGQAALMMRKAAELLVKGLANAEEEVFSLKAKAGELERQRDHYKALLARTNSELDVSRAHAQISEALGGEPAGSSS 174
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BLAST of mRNA_P-littoralis_Contig609.28.1 vs. uniprot
Match: A0A6H5KZE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE5_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 4.550e-61
Identity = 111/165 (67.27%), Postives = 134/165 (81.21%), Query Frame = 1 
Query:    1 DQQQGEGGEDGAALAQESTTLRWEAHGMQGATIALNLRFDDTVRTLESRGNDREAKEVMLRLAKEYKTLNDGLVSRLARLSVINRTMVEILHKSQDGKAALMMRKAAELLVKGLANAEEEVHSIRATVVEVEAQRDHYKGLLAKTNSELETSRAYAQMSKVIGQE 495
            D  QG+    G  L QEST LRWE H +QGA I L+LRF+DT +TLES+G DREA+  MLRLAKE+K LNDGL ++LAR+S+INRT+VEIL KS+DG+AALMMRKAAELLVKGLANAEEEV S++A   E+E QRDHYK LLA TNSEL+ SRA+AQ+S+ +G E
Sbjct:    5 DHPQGQTSAGGEGLVQESTDLRWEGHRLQGAHIELSLRFEDTTQTLESKG-DREARAAMLRLAKEFKQLNDGLAAKLARISMINRTLVEILRKSEDGQAALMMRKAAELLVKGLANAEEEVFSLKAKAGELERQRDHYKALLATTNSELDISRAHAQISEALGGE 168
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig609.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGE4_ECTSI1.460e-6365.50Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KZE5_9PHAE4.550e-6167.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig609contigP-littoralis_Contig609:63616..64683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size516
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003740.1
Cds size516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791267.1710799-CDS-P-littoralis_Contig609:63615..637951680791267.1710799-CDS-P-littoralis_Contig609:63615..63795Pylaiella littoralis U1_48CDSP-littoralis_Contig609 63616..63795 -
1680791267.1846447-CDS-P-littoralis_Contig609:64347..646831680791267.1846447-CDS-P-littoralis_Contig609:64347..64683Pylaiella littoralis U1_48CDSP-littoralis_Contig609 64348..64683 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig609.28.1prot_P-littoralis_Contig609.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig609 63616..64683 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig609.28.1

>prot_P-littoralis_Contig609.28.1 ID=prot_P-littoralis_Contig609.28.1|Name=mRNA_P-littoralis_Contig609.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=172bp
DQQQGEGGEDGAALAQESTTLRWEAHGMQGATIALNLRFDDTVRTLESRG
NDREAKEVMLRLAKEYKTLNDGLVSRLARLSVINRTMVEILHKSQDGKAA
LMMRKAAELLVKGLANAEEEVHSIRATVVEVEAQRDHYKGLLAKTNSELE
TSRAYAQMSKVIGQEACAASSA
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mRNA from alignment at P-littoralis_Contig609:63616..64683-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig609.28.1 ID=mRNA_P-littoralis_Contig609.28.1|Name=mRNA_P-littoralis_Contig609.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1068bp|location=Sequence derived from alignment at P-littoralis_Contig609:63616..64683- (Pylaiella littoralis U1_48)
GATCAGCAGCAAGGAGAAGGCGGTGAGGATGGGGCAGCGCTCGCGCAGGA
GTCGACTACCCTAAGATGGGAGGCGCACGGCATGCAGGGGGCCACGATCG
CGTTGAACCTGCGGTTCGATGATACCGTTCGCACACTGGAGAGCAGGGGG
AACGACCGCGAGGCGAAGGAGGTGATGCTGCGGCTCGCCAAGGAGTATAA
GACTCTCAACGACGGGTTGGTGTCGCGGCTCGCGCGGCTGTCGGTCATTA
ATCGGACGATGGTCGAGATCTTGCACAAGAGTCAGGACGGCAAGGCCGCG
CTCATGATGCGCAAAGCTGCTGAGCTGCTAGTGAAGGTGCGCTAATATTA
CCTATGCCCGTCGATGGTGGGCTCATCCTAGCATGGTACTCTGAGTGTAA
ACAGTAAACACACATCTATGACAAGACGTATAATATGCACCACTCATATT
CGTTTATCGTGTATCAGCTCTGGAAATCTCGCATGATTTTGTTCTCCGAG
AGTACGCCTGTTCGAAGTCTTCTGGGACTGACGCACCAAGTTCATCCGAA
GTTAGTTATCATCCAAGGCGATCCGCACTGGTTCTGTGCTCAAATCTATA
TCCGTCCATTCGACAGGGATTCTCACAAACGTTTCAAGAAAAGTTTGTGC
GGAAGATTTCTCACAAGCCATGCTTCGGACATGCGCAGCTCACCGTTCAT
GTGACTCGCCAATATACCTCACCGTGCGTCACGCTTGATGTGCATGCCGG
GCCGGGTAAACCATTTCGCGATCCGTTTCCGGCTAGCATATAGCGGTGCG
GGATCCCTCTGTGGCTTTTCACTACGGCCATGTATAATCGTGACCCCCCC
CCCCCCCCCCCTCAACACGCTTGTGCTTGCATTATCAGGGGTTGGCGAAC
GCGGAGGAAGAAGTCCACTCCATCAGGGCCACCGTGGTAGAGGTCGAGGC
ACAGCGCGACCACTACAAGGGACTCCTGGCCAAGACGAACTCCGAGCTCG
AAACTTCTCGGGCGTACGCTCAGATGAGCAAGGTGATCGGGCAAGAAGCG
TGTGCTGCTTCTTCGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig609:63616..64683-

>mRNA_P-littoralis_Contig609.28.1 ID=mRNA_P-littoralis_Contig609.28.1|Name=mRNA_P-littoralis_Contig609.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=516bp|location=Sequence derived from alignment at P-littoralis_Contig609:63616..64683- (Pylaiella littoralis U1_48)
GATCAGCAGCAAGGAGAAGGCGGTGAGGATGGGGCAGCGCTCGCGCAGGA
GTCGACTACCCTAAGATGGGAGGCGCACGGCATGCAGGGGGCCACGATCG
CGTTGAACCTGCGGTTCGATGATACCGTTCGCACACTGGAGAGCAGGGGG
AACGACCGCGAGGCGAAGGAGGTGATGCTGCGGCTCGCCAAGGAGTATAA
GACTCTCAACGACGGGTTGGTGTCGCGGCTCGCGCGGCTGTCGGTCATTA
ATCGGACGATGGTCGAGATCTTGCACAAGAGTCAGGACGGCAAGGCCGCG
CTCATGATGCGCAAAGCTGCTGAGCTGCTAGTGAAGGGGTTGGCGAACGC
GGAGGAAGAAGTCCACTCCATCAGGGCCACCGTGGTAGAGGTCGAGGCAC
AGCGCGACCACTACAAGGGACTCCTGGCCAAGACGAACTCCGAGCTCGAA
ACTTCTCGGGCGTACGCTCAGATGAGCAAGGTGATCGGGCAAGAAGCGTG
TGCTGCTTCTTCGGCG
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