mRNA_P-littoralis_Contig609.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig609.9.1
Unique NamemRNA_P-littoralis_Contig609.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig609.9.1 vs. uniprot
Match: A0A6H5KF95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF95_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 9.460e-41
Identity = 96/189 (50.79%), Postives = 114/189 (60.32%), Query Frame = 1 
Query: 1318 NTPRRVTEADLRRHDGISRLKAEVTTRGVPDVAAVVGKRPLQEGIVVWPLAVKSLNFPLNDDHLMGGPVKYEGINGAKAWRNNVRWLELDGNPLPDQCVTAHYVYEVVDRCAPDVVLIVDASGVGHPRDGSGLV-RGDAATKRLMKQHIRCLLEGGARIIEVHSASATEHFIDALKEIA-AGGSHDLRV 1878
            +TPR   +ADL RH  IS LK E+T R VPDVAAVVG+RPLQ+G+ V                                 RNNVRW  LDG+ +PDQC +AHY+Y+V +R   D VLIVDASGV  PR   G   RGDA T   +K HIRC LEG ARI+EVH+A AT  F+DAL+  A AGGSH +RV
Sbjct:    5 STPRDC-KADLARHSEISLLKEEITRRTVPDVAAVVGRRPLQKGVEVC--------------------------------RNNVRWPGLDGHAIPDQCTSAHYLYQVSNRGGLDGVLIVDASGVAAPRGWIGASERGDAGTTNPLKPHIRCFLEGRARIVEVHNARATARFVDALEGRAVAGGSHGVRV 160
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BLAST of mRNA_P-littoralis_Contig609.9.1 vs. uniprot
Match: D8LH22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH22_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 3.840e-20
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1 
Query: 1495 NDDHLMGGPVKYEGINGAKAWRNNVRWLELDGNPLPDQCVTAHYVYEVVDRCAPDVVLIVDASGVGHP 1698
            N +HLM G V+YEG +G K WR NVRW  LDG+ +PDQC TAHY+Y+V DR   D VLIVDASGV  P
Sbjct:   44 NPEHLMRGAVEYEGEDGIKVWRINVRWPSLDGHAIPDQCTTAHYLYQVADRGGLDDVLIVDASGVAPP 111
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig609.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KF95_9PHAE9.460e-4150.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH22_ECTSI3.840e-2063.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig609contigP-littoralis_Contig609:36783..40380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2207
Hectar predicted targeting categoryother localisation
Exons5
Cds size1365
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig609.9.1prot_P-littoralis_Contig609.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig609 36783..39025 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791266.7922857-CDS-P-littoralis_Contig609:36782..378711680791266.7922857-CDS-P-littoralis_Contig609:36782..37871Pylaiella littoralis U1_48CDSP-littoralis_Contig609 36783..37871 -
1680791266.8045304-CDS-P-littoralis_Contig609:38064..381661680791266.8045304-CDS-P-littoralis_Contig609:38064..38166Pylaiella littoralis U1_48CDSP-littoralis_Contig609 38065..38166 -
1680791266.8145478-CDS-P-littoralis_Contig609:38622..386791680791266.8145478-CDS-P-littoralis_Contig609:38622..38679Pylaiella littoralis U1_48CDSP-littoralis_Contig609 38623..38679 -
1680791266.8289316-CDS-P-littoralis_Contig609:38908..390251680791266.8289316-CDS-P-littoralis_Contig609:38908..39025Pylaiella littoralis U1_48CDSP-littoralis_Contig609 38909..39025 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791266.8436573-UTR-P-littoralis_Contig609:39025..390271680791266.8436573-UTR-P-littoralis_Contig609:39025..39027Pylaiella littoralis U1_48UTRP-littoralis_Contig609 39026..39027 -
1680791266.8584833-UTR-P-littoralis_Contig609:39542..403801680791266.8584833-UTR-P-littoralis_Contig609:39542..40380Pylaiella littoralis U1_48UTRP-littoralis_Contig609 39543..40380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig609.9.1

>prot_P-littoralis_Contig609.9.1 ID=prot_P-littoralis_Contig609.9.1|Name=mRNA_P-littoralis_Contig609.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=455bp
MTRTAGTDPGAMKTNRTPQPRRRKAKSSGRLGQGSGKEWTPRQNNAQPNG
ARKLKKSKVPAIDEACQPPTMSAAAVAAAAAPTLRKRKRNPETQVASSKR
GSDGTGGPSPAQTRSPPTGGGSRGVYDLSPADARTKIRDALPEELRDKLT
RSVSGPSWRNTPRRVTEADLRRHDGISRLKAEVTTRGVPDVAAVVGKRPL
QEGIVVWPLAVKSLNFPLNDDHLMGGPVKYEGINGAKAWRNNVRWLELDG
NPLPDQCVTAHYVYEVVDRCAPDVVLIVDASGVGHPRDGSGLVRGDAATK
RLMKQHIRCLLEGGARIIEVHSASATEHFIDALKEIAAGGSHDLRVPLGS
SNVRAHVFFDVPRGGDQGSDAVVVIGTNHHCMMRTPLNAARIVRHQIFAS
ALGGRQLDTEQVAGLWGMVAGATMTNEEWTENYATLIEELNPEERAVFER
FQEKH
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mRNA from alignment at P-littoralis_Contig609:36783..40380-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig609.9.1 ID=mRNA_P-littoralis_Contig609.9.1|Name=mRNA_P-littoralis_Contig609.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3598bp|location=Sequence derived from alignment at P-littoralis_Contig609:36783..40380- (Pylaiella littoralis U1_48)
TGCCCGGGGACGTCTTGCTAGCCAAGGAGTCAGACCCCGATGCTTCGGCC
TTGCGCCCCGGCATCACATGGGATTCGATCTGTCTCGCGAGGAGGCCAAG
GCAACGACGGAACCCGGGTGTCATGAAGGCAGCGGTTCTCTTTCAGGCCG
ATGGAGCCCCGGTATTTACGTATCAAATTGGTTTGTATGATGTTGAAGTG
TTGTTTGTGTAGAACGTTTTTGTTTCGGCTTCACTCAAACCTCTCCGCCG
GTATGCTCCTGAGTGCTTCCTTGACGAAGGCCGCCCCGGCACCGCACGCA
GCCTTCGGGCATTCTTTTAACCGCTGCGGCTCTCTGTCGATAATGGGGGA
ACACTCAGCGGCATACTGGTGCGTGCGCGAGAGATTTGGGTGGGGCGCGG
CCGCTCTGTTCATAGCATCGAGCTCTCGTGTGCCAAAAGTAGAAGTAGAC
GAGACTCTCTCCGCGCCGTCGCAGAGTCATCCATCGTACACGTTGCCTGT
CTCTCGCCACATGCCCCCCTCCTTTGTCACTGGTTCCGCAGGCTTCGGCC
ACTATCAAACCAAAATCATCGGCAAGGGGCAGGCTGAGAGAGAGTTGCGT
GATGTTTGGTGGCTGTTTGTGGTCGTGCGGTAGAGGGGGGAGCTCGGCGC
TGTAGGAACGTGCAATTTAGCGCACGAACACCGCATTATTTTTCGAACGC
TTATTCGGTGCCCTTGGTTCTCTGCGTGTCGTTCTATGCCTCCCTCCCCC
GTGTCCTCGTGCAGGTGTGCATTCACCGGGAGGTCCTACTGACGCCAACG
GGCAGCGCTCGCATCGTCTGTGCTGTTTCCATCTCGAGGTGAGCCCTTCC
TCTCCGCTGTTTGAAAGAGACCATTTCGGGCCCACGAACGAGCTGCGGTC
GTACTAAGTTCGTCAATCGCACAGGAGTTGTATGAGGCATCGCTCCCAAT
CGCCTTCGTGTATGTGGAGAAGAGAGAGAGAGAGAGAGCGAGGTGCGCGC
GATTTTCTGAAAACATGTGGAATGTGGAAGTGTCGAGTTTTCGTTTCCGA
CCGGGCAGCAACAGATCGGCCGGTAGAGGGAGGGGCTCCAACATACTGTA
GCGTTAGTTTGTGACATCGTTCTCATGATGGCTGCGTGCGTGTATGGTAT
GTCGCGGAAATGTTGTATGTTCTCCAGTATGTGTGTGTGTGCACCCCCCC
CCCCCACCCCAATCCAGATAGTCGGAAACTCGATCGGTGGCAATGCACCT
CACGTATGCAACAGTCATGTCTTTGTTCGGTGCTTGAAGTATGGCAAACA
TTGCTCACGCTGTTACGTCGTGCTCTACCCGGCGTGCCGATAAAACATGA
CAGCCATGACGAGGACCGCCGGCACAGACCCGGGGGCCATGAAGACTAAC
CGCACGCCTCAACCACGCCGGAGGAAAGCGAAGAGTTCCGGCCGACTCGG
CCAAGGTTCCGGGAAGGAATGGGTGAGCGGCGTTGTGAGAGCATAAGCTT
TTGTGATGCGTGAGTCGTTGTCGGCCAGTGAATGAGACGAGGCTATTCTT
CGCAGCCTCGACGAGCTCTCCTCCGAGCGGAACGGAGCAGATTCTATGTA
GGCCAGGTTCCGTACGATTACACGGATGTCTCTGTAGATTTCAATGCCTT
TGATCGGTCATTGCCGCGCTTCCGCCATCCTTGCTCCATGCTCCCAACCA
GACTCCCCGCCAGAACAACGCCCAGCCCAACGGGGCTCGCAAGTTGAAGA
AGAGCAAAGTGAGAAACACTTGGATGTTAGCTCGCTTCTTCAAGGTCGGT
CGGGTCCACTTCGGGGCCTTTTGTATGTCAAGAATTGTATGGCGCTTATC
TCAACCTCCCTCGTTTTCCAACCACCGGCGGAGTTCCAGTATCGACCGAT
GCGAACGCAGGGTGCCAGGCGTTGCCGCCTCACTGGTATTTTGGTGTGTA
GCTTGCGGTGGCCTCTCACTTTCGGTTTCGGATTATGGATCATTTGAACA
AACACTTGCCCGCCGTTGATTCGTGGCCGCAGCTGCTTTGGTTTTGAGTC
GGGTAGGAACGTCTCTTTCCGCGGGATTCTCCCCGATGTAGAATGCGTGC
GAATTCGTCGGGATCTCCCGCCAAAAAACCACAGACATTTCATGCGCCCC
ACCAGACACTCTTCATCCGCATTAATCCAGAACGCCGAAACCCGCCGGGA
TGGTGCACCTCCAGGTGCCCGCGATCGACGAGGCTTGCCAGCCCCCGACG
ATGTCGGCGGCGGCGGTGGCTGCGGCGGCGGCCCCCACGCTGAGGAAGCG
GAAGAGGAACCCTGAGGTCAGTTTTTCGATTTTGGCTCGTAGCCCGCTAG
TCCGTAGACGTGTGACGCCCATCCATGCGGTCCTTGACACGCTGCGTATA
TGACAGTCGAATGTACTTCGCCGAATAACCGTCTGTCGAGGTAACGTCAG
GCAATCCTAAAATGGACCATCTCATTGCGCCACACAACTGCCGTGCCGCA
CTAAAACAGACGCAGGTCGCTAGCAGCAAGAGAGGCAGCGACGGGACCGG
TGGCCCCTCCCCAGCCCAGACGAGGTCTCCACCCACCGGCGGCGGCAGCC
GCGGTGTCTACGACCTTAGCCCGGCGGACGCACGCACGAAGATTCGGGAC
GCCCTTCCCGAGGAGCTCCGCGACAAGTTGACCCGGAGCGTCAGCGGCCC
TTCCTGGCGGAATACTCCACGCCGCGTGACCGAGGCCGACCTTCGTCGGC
ATGATGGGATCTCCCGGTTGAAAGCGGAGGTCACCACGCGTGGGGTGCCC
GACGTGGCGGCGGTAGTGGGGAAGCGGCCGCTGCAAGAGGGTATTGTGGT
GTGGCCCCTCGCGGTCAAAAGTCTCAACTTCCCCCTCAACGACGACCATC
TGATGGGGGGCCCCGTCAAGTACGAGGGAATCAACGGGGCCAAGGCCTGG
CGTAACAACGTGCGCTGGCTGGAGCTGGATGGGAACCCCCTCCCCGACCA
GTGCGTCACCGCACACTACGTGTATGAGGTGGTGGACAGATGCGCCCCGG
ATGTCGTCCTTATCGTCGACGCTTCTGGGGTCGGGCACCCTCGGGATGGA
TCGGGGCTAGTGAGGGGTGATGCCGCTACGAAGCGTCTGATGAAGCAGCA
TATTCGGTGCCTCTTGGAAGGCGGGGCCCGTATCATCGAGGTCCATAGCG
CCAGCGCGACGGAGCACTTTATCGACGCCCTAAAGGAAATAGCCGCCGGT
GGGTCGCACGACCTGAGGGTCCCGTTGGGCAGCTCGAACGTACGGGCGCA
CGTCTTCTTCGACGTGCCGCGCGGGGGAGACCAGGGGTCGGATGCGGTTG
TCGTCATCGGGACCAATCACCATTGTATGATGAGGACGCCGCTGAACGCC
GCAAGAATAGTCAGACACCAAATTTTCGCGTCCGCGCTCGGAGGGAGACA
GCTCGACACCGAGCAGGTAGCCGGGTTGTGGGGCATGGTGGCCGGAGCCA
CAATGACCAACGAGGAATGGACCGAAAACTACGCAACCCTGATAGAGGAG
CTAAATCCGGAGGAGCGCGCCGTTTTCGAGCGCTTTCAGGAGAAGCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig609:36783..40380-

>mRNA_P-littoralis_Contig609.9.1 ID=mRNA_P-littoralis_Contig609.9.1|Name=mRNA_P-littoralis_Contig609.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1365bp|location=Sequence derived from alignment at P-littoralis_Contig609:36783..40380- (Pylaiella littoralis U1_48)
ATGACGAGGACCGCCGGCACAGACCCGGGGGCCATGAAGACTAACCGCAC
GCCTCAACCACGCCGGAGGAAAGCGAAGAGTTCCGGCCGACTCGGCCAAG
GTTCCGGGAAGGAATGGACTCCCCGCCAGAACAACGCCCAGCCCAACGGG
GCTCGCAAGTTGAAGAAGAGCAAAGTGCCCGCGATCGACGAGGCTTGCCA
GCCCCCGACGATGTCGGCGGCGGCGGTGGCTGCGGCGGCGGCCCCCACGC
TGAGGAAGCGGAAGAGGAACCCTGAGACGCAGGTCGCTAGCAGCAAGAGA
GGCAGCGACGGGACCGGTGGCCCCTCCCCAGCCCAGACGAGGTCTCCACC
CACCGGCGGCGGCAGCCGCGGTGTCTACGACCTTAGCCCGGCGGACGCAC
GCACGAAGATTCGGGACGCCCTTCCCGAGGAGCTCCGCGACAAGTTGACC
CGGAGCGTCAGCGGCCCTTCCTGGCGGAATACTCCACGCCGCGTGACCGA
GGCCGACCTTCGTCGGCATGATGGGATCTCCCGGTTGAAAGCGGAGGTCA
CCACGCGTGGGGTGCCCGACGTGGCGGCGGTAGTGGGGAAGCGGCCGCTG
CAAGAGGGTATTGTGGTGTGGCCCCTCGCGGTCAAAAGTCTCAACTTCCC
CCTCAACGACGACCATCTGATGGGGGGCCCCGTCAAGTACGAGGGAATCA
ACGGGGCCAAGGCCTGGCGTAACAACGTGCGCTGGCTGGAGCTGGATGGG
AACCCCCTCCCCGACCAGTGCGTCACCGCACACTACGTGTATGAGGTGGT
GGACAGATGCGCCCCGGATGTCGTCCTTATCGTCGACGCTTCTGGGGTCG
GGCACCCTCGGGATGGATCGGGGCTAGTGAGGGGTGATGCCGCTACGAAG
CGTCTGATGAAGCAGCATATTCGGTGCCTCTTGGAAGGCGGGGCCCGTAT
CATCGAGGTCCATAGCGCCAGCGCGACGGAGCACTTTATCGACGCCCTAA
AGGAAATAGCCGCCGGTGGGTCGCACGACCTGAGGGTCCCGTTGGGCAGC
TCGAACGTACGGGCGCACGTCTTCTTCGACGTGCCGCGCGGGGGAGACCA
GGGGTCGGATGCGGTTGTCGTCATCGGGACCAATCACCATTGTATGATGA
GGACGCCGCTGAACGCCGCAAGAATAGTCAGACACCAAATTTTCGCGTCC
GCGCTCGGAGGGAGACAGCTCGACACCGAGCAGGTAGCCGGGTTGTGGGG
CATGGTGGCCGGAGCCACAATGACCAACGAGGAATGGACCGAAAACTACG
CAACCCTGATAGAGGAGCTAAATCCGGAGGAGCGCGCCGTTTTCGAGCGC
TTTCAGGAGAAGCAC
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