mRNA_P-littoralis_Contig609.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig609.18.1
Unique NamemRNA_P-littoralis_Contig609.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig609.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig609contigP-littoralis_Contig609:49271..49803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size478
Hectar predicted targeting categoryother localisation
Exons2
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791266.4857848-UTR-P-littoralis_Contig609:49270..493411680791266.4857848-UTR-P-littoralis_Contig609:49270..49341Pylaiella littoralis U1_48UTRP-littoralis_Contig609 49271..49341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791266.5029814-CDS-P-littoralis_Contig609:49341..495751680791266.5029814-CDS-P-littoralis_Contig609:49341..49575Pylaiella littoralis U1_48CDSP-littoralis_Contig609 49342..49575 -
1680791266.5195575-CDS-P-littoralis_Contig609:49632..498031680791266.5195575-CDS-P-littoralis_Contig609:49632..49803Pylaiella littoralis U1_48CDSP-littoralis_Contig609 49633..49803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig609.18.1prot_P-littoralis_Contig609.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig609 49342..49803 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig609.18.1

>prot_P-littoralis_Contig609.18.1 ID=prot_P-littoralis_Contig609.18.1|Name=mRNA_P-littoralis_Contig609.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp
VLYPVLPELRVGSACIGQCRAPLGLREGSWEDGHSCLNTQVSSSLVPTTA
RRKYELCSGGGGRGILLNRGECESRFVLRRSLSLQGCIVCFWFPDVFGIQ
QLLYLLRAHAYSRLYVTLTFCPEFSCLDRSVPAP*
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mRNA from alignment at P-littoralis_Contig609:49271..49803-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig609.18.1 ID=mRNA_P-littoralis_Contig609.18.1|Name=mRNA_P-littoralis_Contig609.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=533bp|location=Sequence derived from alignment at P-littoralis_Contig609:49271..49803- (Pylaiella littoralis U1_48)
GTATTGTACCCTGTTTTGCCCGAATTGAGAGTGGGGTCTGCGTGCATCGG
TCAATGTCGCGCGCCTTTGGGTCTACGAGAAGGGAGTTGGGAGGACGGGC
ACTCGTGTCTAAACACCCAGGTTTCAAGCTCTCTCGTTCCGACTACTGCT
CGTAGGAAGTACGAGCTATGTCTGAGACCAGAGTTGTGTTTTTTTGCGTG
GCCGTGGTCCGCGGCTGGTGCTGTAAGCAGCGGGGGGGGGGGACGTGGTA
TCTTGCTCAATCGAGGAGAATGCGAGTCACGCTTTGTCCTTCGCCGTTCG
CTCAGCTTACAGGGATGCATCGTTTGCTTTTGGTTTCCCGATGTATTTGG
CATACAGCAACTCCTCTACCTTCTGCGAGCTCATGCATATAGTAGGCTCT
ACGTAACCTTAACTTTCTGTCCTGAGTTTTCCTGTCTTGATCGATCTGTT
CCCGCGCCATGATCGTTGGCGGTTTCATTGCACGCACTTGGTTCCGGCGC
ACGTGCCAATACTGAAGAAGCTCGACGAAGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig609:49271..49803-

>mRNA_P-littoralis_Contig609.18.1 ID=mRNA_P-littoralis_Contig609.18.1|Name=mRNA_P-littoralis_Contig609.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig609:49271..49803- (Pylaiella littoralis U1_48)
GTATTGTACCCTGTTTTGCCCGAATTGAGAGTGGGGTCTGCGTGCATCGG
TCAATGTCGCGCGCCTTTGGGTCTACGAGAAGGGAGTTGGGAGGACGGGC
ACTCGTGTCTAAACACCCAGGTTTCAAGCTCTCTCGTTCCGACTACTGCT
CGTAGGAAGTACGAGCTATGTAGCGGGGGGGGGGGACGTGGTATCTTGCT
CAATCGAGGAGAATGCGAGTCACGCTTTGTCCTTCGCCGTTCGCTCAGCT
TACAGGGATGCATCGTTTGCTTTTGGTTTCCCGATGTATTTGGCATACAG
CAACTCCTCTACCTTCTGCGAGCTCATGCATATAGTAGGCTCTACGTAAC
CTTAACTTTCTGTCCTGAGTTTTCCTGTCTTGATCGATCTGTTCCCGCGC
CATGA
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