mRNA_P-littoralis_Contig608.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig608.27.1
Unique NamemRNA_P-littoralis_Contig608.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig608.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig608contigP-littoralis_Contig608:166557..167157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size262
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791266.3308167-UTR-P-littoralis_Contig608:166556..1665591680791266.3308167-UTR-P-littoralis_Contig608:166556..166559Pylaiella littoralis U1_48UTRP-littoralis_Contig608 166557..166559 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791266.3413541-CDS-P-littoralis_Contig608:166559..1666811680791266.3413541-CDS-P-littoralis_Contig608:166559..166681Pylaiella littoralis U1_48CDSP-littoralis_Contig608 166560..166681 +
1680791266.355018-CDS-P-littoralis_Contig608:167021..1671571680791266.355018-CDS-P-littoralis_Contig608:167021..167157Pylaiella littoralis U1_48CDSP-littoralis_Contig608 167022..167157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig608.27.1prot_P-littoralis_Contig608.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig608 166560..167157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig608.27.1

>prot_P-littoralis_Contig608.27.1 ID=prot_P-littoralis_Contig608.27.1|Name=mRNA_P-littoralis_Contig608.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
MTALAGVFSHSPCNNDAFKNLQTELDGLSTALEVLRRNDTRWGSVYAMLK
REVRLYKPMQEFFTRNLNKSNISKRAPNPTEWQAAR
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mRNA from alignment at P-littoralis_Contig608:166557..167157+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig608.27.1 ID=mRNA_P-littoralis_Contig608.27.1|Name=mRNA_P-littoralis_Contig608.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=601bp|location=Sequence derived from alignment at P-littoralis_Contig608:166557..167157+ (Pylaiella littoralis U1_48)
GTGATGACCGCGCTTGCGGGGGTCTTCAGCCATTCCCCGTGCAACAACGA
CGCCTTCAAAAACCTGCAAACGGAGCTGGACGGACTGTCCACCGCTTTGG
AGGTTCTCCGCCGCAACGATACGAGGTGTGTGTTTTGTGTGTGCTTGTGT
CTTGTTTAGAATAGCGTGGAGTTAGCATAGAGCATAGATGAGCGGTAAGT
TCTGTAATGCTCCCAGAAACTAGAAACAACTGCCGGGGGTTGCTGTGGCA
AAGTATTTCCTGCCCTTTCCTAGTGCCGTGGTACGCTTGTGTTCGTTGAC
ATTTGCTGTGGCGCTCTCATGCATGAACACGCCGTAACATTAGTTGGTGT
CACTGGTGTTAATTGTTTACTGCGGTAGCTGCAGAGTTCGAGCTCCCTGC
GCGTGATACCATCGGCAAATCTCACGATCAACTTTAACATGCCCCCCTCT
TACACCCCCTTGCAGGTGGGGGTCAGTGTATGCGATGTTGAAGCGGGAGG
TGCGCCTCTACAAGCCTATGCAGGAGTTCTTCACGCGGAACCTGAACAAA
TCAAACATCAGCAAGCGCGCGCCTAACCCGACGGAGTGGCAGGCTGCCCG
T
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Coding sequence (CDS) from alignment at P-littoralis_Contig608:166557..167157+

>mRNA_P-littoralis_Contig608.27.1 ID=mRNA_P-littoralis_Contig608.27.1|Name=mRNA_P-littoralis_Contig608.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig608:166557..167157+ (Pylaiella littoralis U1_48)
ATGACCGCGCTTGCGGGGGTCTTCAGCCATTCCCCGTGCAACAACGACGC
CTTCAAAAACCTGCAAACGGAGCTGGACGGACTGTCCACCGCTTTGGAGG
TTCTCCGCCGCAACGATACGAGGTGGGGGTCAGTGTATGCGATGTTGAAG
CGGGAGGTGCGCCTCTACAAGCCTATGCAGGAGTTCTTCACGCGGAACCT
GAACAAATCAAACATCAGCAAGCGCGCGCCTAACCCGACGGAGTGGCAGG
CTGCCCGT
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