mRNA_P-littoralis_Contig608.18.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig608.18.2
Unique NamemRNA_P-littoralis_Contig608.18.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig608.18.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig608contigP-littoralis_Contig608:144786..145654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size250
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size171
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791265.6520398-UTR-P-littoralis_Contig608:144785..1448641680791265.6520398-UTR-P-littoralis_Contig608:144785..144864Pylaiella littoralis U1_48UTRP-littoralis_Contig608 144786..144864 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791265.6625154-CDS-P-littoralis_Contig608:144864..1448691680791265.6625154-CDS-P-littoralis_Contig608:144864..144869Pylaiella littoralis U1_48CDSP-littoralis_Contig608 144865..144869 -
1680791265.6742566-CDS-P-littoralis_Contig608:145197..1452791680791265.6742566-CDS-P-littoralis_Contig608:145197..145279Pylaiella littoralis U1_48CDSP-littoralis_Contig608 145198..145279 -
1680791265.6853395-CDS-P-littoralis_Contig608:145570..1456541680791265.6853395-CDS-P-littoralis_Contig608:145570..145654Pylaiella littoralis U1_48CDSP-littoralis_Contig608 145571..145654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig608.18.2prot_P-littoralis_Contig608.18.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig608 144865..145654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig608.18.2

>prot_P-littoralis_Contig608.18.2 ID=prot_P-littoralis_Contig608.18.2|Name=mRNA_P-littoralis_Contig608.18.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=57bp
TPTAVRGTPRRAQVLLRPSWGRASKVLACVPQRHEAVQYEHMTHSRAMLL
VAAAAN*
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mRNA from alignment at P-littoralis_Contig608:144786..145654-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig608.18.2 ID=mRNA_P-littoralis_Contig608.18.2|Name=mRNA_P-littoralis_Contig608.18.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=869bp|location=Sequence derived from alignment at P-littoralis_Contig608:144786..145654- (Pylaiella littoralis U1_48)
ACGCCGACAGCAGTGCGTGGTACGCCACGGAGGGCACAGGTGCTGCTGAG
GCCATCCTGGGGGCGAGCGTCGAAGGTTCTTGCTGTGAGTGTTGCAGGGA
GTCGGACTGGCAGCACTCTGTTGGCTGGAGAACGTCGCGCTGCAGAGTCG
CTGCAGAGTGTGTGCCTGCTGCTGTTGTTGGATGCAGATGTATGTGTGCA
CAGGTGTGCAGCTGCGCAGTACAAGTATTGAGAGATTGTCGGGTATGATT
GCTACTGCTGTGCAACGTCTTTCCCAGATTGCAGCAGCGATATACCTGTG
CCAATAATACCAAAGGTGCAACCTCCTGGTTGCTGCTTGCTTTGGCTGTT
CCCTGCAACGGGTGCTGTGTCGCAGTGCGTACCACAGAGACATGAAGCGG
TTCAATACGAACACATGACACACAGCCGTGCCATGCTGCTGGTTGCTGCT
GCAGCAAGTGAGTACATTCTGTACATTATGTACAGCAGTACACAGACGAT
CGAACTGCCCTGCCTGATACATACTCCGAGTATCCATCAGCACGTGCATA
CAGCACTGCTGTGTCGTAGACTGCCCTCCCTGCCTTATACTTACCCAAAT
AAATCCACGTACAAGTACCAAGCCCGTGACGTACATGCGTTCCTCCTGCT
TTCCATGTTGCTGACGGGGGGCGGCGCAGGCTACTTAGTGTAGCCCACTT
GCTGTGTGTTTGTTATTTGAACGTTGTGAAACGTGTACTTTAAACGTTTG
CTCCGTCCGTCCGTGATGCTCAAATGTGTAAACAGACTGAGATGACATCC
CGCGCGGATCTGGAGGAAAACTGTAGGGAGTTTTTGTCGAAAGTTGAGCA
GCGTGTACAGGCACTCGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig608:144786..145654-

>mRNA_P-littoralis_Contig608.18.2 ID=mRNA_P-littoralis_Contig608.18.2|Name=mRNA_P-littoralis_Contig608.18.2|organism=Pylaiella littoralis U1_48|type=CDS|length=171bp|location=Sequence derived from alignment at P-littoralis_Contig608:144786..145654- (Pylaiella littoralis U1_48)
ACGCCGACAGCAGTGCGTGGTACGCCACGGAGGGCACAGGTGCTGCTGAG
GCCATCCTGGGGGCGAGCGTCGAAGGTTCTTGCTTGCGTACCACAGAGAC
ATGAAGCGGTTCAATACGAACACATGACACACAGCCGTGCCATGCTGCTG
GTTGCTGCTGCAGCAAACTGA
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