mRNA_P-littoralis_Contig607.82.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig607.82.1
Unique NamemRNA_P-littoralis_Contig607.82.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig607.82.1 vs. uniprot
Match: A0A6H5KAW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW6_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 7.510e-22
Identity = 62/133 (46.62%), Postives = 80/133 (60.15%), Query Frame = 3 
Query:   42 LHRTGAT-------GYRTDAQQPQPTMVSEMPNA--AVVARTVAQEAAAAIRSRPAPSQLGIPLSRDLLWAFKRVLVKFGGKNLTQAGQKTFQALPIAYPAVATKQSGQMAGAEREVFSTNSLVKFAIPNFLL 413
            L  TGA        G  +  ++P    +SE+  A  A  AR +AQEAA   R     S+LG+PLS DLL AF+ VL+K GGK ++   QKTFQA PIAY A+  KQS QM   ER+V  T +LV+FAIP F++
Sbjct:   33 LQNTGAACPCQDSNGRASTQRKPVHKQLSEVMEADQAAAARALAQEAALRAREEAEQSKLGVPLSNDLLRAFRLVLLKTGGKVMSALAQKTFQAFPIAYAAITCKQSEQMDKGERDVVCTKTLVEFAIPQFIV 165
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig607.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAW6_9PHAE7.510e-2246.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig607contigP-littoralis_Contig607:166857..167269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size413
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791265.5500803-CDS-P-littoralis_Contig607:166856..1671711680791265.5500803-CDS-P-littoralis_Contig607:166856..167171Pylaiella littoralis U1_48CDSP-littoralis_Contig607 166857..167171 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791265.5637589-UTR-P-littoralis_Contig607:167171..1672691680791265.5637589-UTR-P-littoralis_Contig607:167171..167269Pylaiella littoralis U1_48UTRP-littoralis_Contig607 167172..167269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig607.82.1prot_P-littoralis_Contig607.82.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig607 166857..167171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig607.82.1

>prot_P-littoralis_Contig607.82.1 ID=prot_P-littoralis_Contig607.82.1|Name=mRNA_P-littoralis_Contig607.82.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MVSEMPNAAVVARTVAQEAAAAIRSRPAPSQLGIPLSRDLLWAFKRVLVK
FGGKNLTQAGQKTFQALPIAYPAVATKQSGQMAGAEREVFSTNSLVKFAI
PNFLL
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mRNA from alignment at P-littoralis_Contig607:166857..167269-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig607.82.1 ID=mRNA_P-littoralis_Contig607.82.1|Name=mRNA_P-littoralis_Contig607.82.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=413bp|location=Sequence derived from alignment at P-littoralis_Contig607:166857..167269- (Pylaiella littoralis U1_48)
TTCCTTTTGAAATTCAAAAATAAACCCACACGAGTCCCCCGTTGCACCGC
ACCGGCGCAACGGGTTACCGCACAGACGCACAACAACCCCAGCCCACCAT
GGTGTCTGAGATGCCAAACGCAGCAGTAGTTGCACGGACTGTTGCCCAGG
AGGCTGCTGCAGCTATACGGTCCAGACCTGCGCCATCGCAGCTCGGAATT
CCCCTCAGCAGGGACCTGCTGTGGGCATTCAAGCGCGTGCTGGTCAAGTT
TGGGGGCAAGAACCTGACTCAAGCCGGCCAGAAAACCTTCCAGGCTCTCC
CCATCGCATACCCTGCCGTCGCCACGAAACAGTCAGGGCAGATGGCCGGG
GCAGAGCGGGAAGTATTTTCGACGAATTCCCTCGTCAAGTTCGCCATCCC
GAACTTTCTCTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig607:166857..167269-

>mRNA_P-littoralis_Contig607.82.1 ID=mRNA_P-littoralis_Contig607.82.1|Name=mRNA_P-littoralis_Contig607.82.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig607:166857..167269- (Pylaiella littoralis U1_48)
ATGGTGTCTGAGATGCCAAACGCAGCAGTAGTTGCACGGACTGTTGCCCA
GGAGGCTGCTGCAGCTATACGGTCCAGACCTGCGCCATCGCAGCTCGGAA
TTCCCCTCAGCAGGGACCTGCTGTGGGCATTCAAGCGCGTGCTGGTCAAG
TTTGGGGGCAAGAACCTGACTCAAGCCGGCCAGAAAACCTTCCAGGCTCT
CCCCATCGCATACCCTGCCGTCGCCACGAAACAGTCAGGGCAGATGGCCG
GGGCAGAGCGGGAAGTATTTTCGACGAATTCCCTCGTCAAGTTCGCCATC
CCGAACTTTCTCTTG
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