mRNA_P-littoralis_Contig607.54.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig607.54.1
Unique Name	mRNA_P-littoralis_Contig607.54.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

[Close]

BLAST of mRNA_P-littoralis_Contig607.54.1 vs. uniprot
Match: A0A6H5K465_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K465_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.260e-27
Identity = 61/97 (62.89%), Postives = 69/97 (71.13%), Query Frame = 1

Query:  337 RVPDSVTGLPTLALQGRGRLAVFPVVAIRRQVHMYHQCPQQNGEGAGSHFHCGPQRDQEGSRKWRHNFRLASPGSG-GNDKYILNEVHHSINQDTFL 624
            RVPDS+TG PTL+L+GRGR  V+PV A RRQV MYHQCPQ      GS   CG  +     R WRH FRLA PGS  G DKY+LN+VHHSINQDTF+
Sbjct:  278 RVPDSITGHPTLSLRGRGRPKVYPVHASRRQVQMYHQCPQGQDAAEGSRL-CGETQGAGRDRVWRHKFRLALPGSSNGYDKYLLNKVHHSINQDTFV 373

[Close]

BLAST of mRNA_P-littoralis_Contig607.54.1 vs. uniprot
Match: A0A6H5JRL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL1_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 5.310e-27
Identity = 63/100 (63.00%), Postives = 71/100 (71.00%), Query Frame = 1

Query:  337 RVPDSVTGLPTLALQGRGRLAVFPVVAIRRQVHMYHQCPQQNGEGAGSHFHCGP-QRDQEGSRK--WRHNFRLASPGS-GGNDKYILNEVHHSINQDTFL 624
            RVPDSVT  PTL+LQGRGR  V+PV AIRRQVHMYHQCPQ +  G+ +   CG  Q    G R   W H FRLA PGS  G D+Y+LNEVHHS NQDTF+
Sbjct:  305 RVPDSVTRHPTLSLQGRGRPKVYPVQAIRRQVHMYHQCPQHSDVGSSTSQICGESQGPYSGGRDRVWHHRFRLALPGSRNGYDRYLLNEVHHSTNQDTFV 404

[Close]

BLAST of mRNA_P-littoralis_Contig607.54.1 vs. uniprot
Match: A0A6H5JRJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ8_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.680e-25
Identity = 60/101 (59.41%), Postives = 70/101 (69.31%), Query Frame = 1

Query:  337 RVPDSVTGLPTLALQGRGRLAVFPVVAIRRQVHMYHQCPQQNGEG-AGSHFHCGPQRDQEGSRK----WRHNFRLASPGSGGNDKYILNEVHHSINQDTFL 624
            RVPDS+TG PTL L+ RGR AV+PV AI RQVH+YH C   +GEG  GS   CG     EGS +    WRH FR A+PG+ G DKY+LN  HHSINQDTF+
Sbjct:  133 RVPDSITGHPTLNLRARGRPAVYPVSAIYRQVHLYHACSL-SGEGETGSSHVCGVVTGGEGSGRGAGAWRHRFRQATPGTTGCDKYLLNGCHHSINQDTFV 232

[Close]

BLAST of mRNA_P-littoralis_Contig607.54.1 vs. uniprot
Match: A0A6H5KNJ3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNJ3_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.460e-25
Identity = 61/101 (60.40%), Postives = 71/101 (70.30%), Query Frame = 1

Query:  337 RVPDSVTGLPTLALQGRGRLAVFPVVAIRRQVHMYHQCPQQNGEG-AGSHFHCGPQRDQEGSRK----WRHNFRLASPGSGGNDKYILNEVHHSINQDTFL 624
            RVPDS+TG PTL L+ RGR AV+PV AI RQVH+YH C   +GEG  GS   CG     EGS +    WRH FR A+PG+ G DKY+LNE HHSINQDTF+
Sbjct:  328 RVPDSITGHPTLNLRARGRPAVYPVSAIYRQVHLYHACSL-SGEGETGSSHVCGVVTGGEGSGRGAGAWRHRFRQATPGTTGYDKYLLNECHHSINQDTFV 427

[Close]

BLAST of mRNA_P-littoralis_Contig607.54.1 vs. uniprot
Match: A0A6H5JYX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX6_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 5.260e-24
Identity = 62/99 (62.63%), Postives = 69/99 (69.70%), Query Frame = 1

Query:  337 RVPDSVTGLPTLALQGRGRLAVFPVVAIRRQVHMYHQCPQQNGEG-AGSHFHCGPQRDQEGSRK----WRHNFRLASPGSGGNDKYILNEVHHSINQDT 618
            RVPDS+TG PTL L+ RGR AV+PV AI RQVH+YH C   +GEG AGS   CG     EGS      WRH FR A+PG+ G DKYILNE HHSINQDT
Sbjct: 1038 RVPDSITGHPTLNLRARGRPAVYPVSAIYRQVHLYHACSL-SGEGEAGSSHVCGVVTGGEGSGHGAGAWRHRFRQATPGTTGYDKYILNECHHSINQDT 1135

[Close]

BLAST of mRNA_P-littoralis_Contig607.54.1 vs. uniprot
Match: A0A6H5KKN3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN3_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.290e-23
Identity = 58/101 (57.43%), Postives = 69/101 (68.32%), Query Frame = 1

Query:  337 RVPDSVTGLPTLALQGRGRLAVFPVVAIRRQVHMYHQCPQQNGEG-AGSHFHCGPQRDQEGSRK----WRHNFRLASPGSGGNDKYILNEVHHSINQDTFL 624
            RVPDS+TG PTL ++ RGR AV+PV AI   VH+YH C   +GEG  GS   CG     EGS +    WRH FR A+PG+ G DKY+LNE HHSINQDTF+
Sbjct:  197 RVPDSITGHPTLNVRARGRPAVYPVSAIYWPVHLYHACSL-SGEGETGSSHVCGVVTGGEGSGRGAGAWRHRFRQATPGTTGYDKYLLNECHHSINQDTFV 296

[Close]

BLAST of mRNA_P-littoralis_Contig607.54.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.820e-23
Identity = 60/101 (59.41%), Postives = 70/101 (69.31%), Query Frame = 1

Query:  337 RVPDSVTGLPTLALQGRGRLAVFPVVAIRRQVHMYHQCPQQNGEG-AGSHFHCGPQRDQEGSRK----WRHNFRLASPGSGGNDKYILNEVHHSINQDTFL 624
            RVPDS+TG PTL L+ RGR AV+PV AI  QVH+YH C   +GEG  GS   CG     EGS +    WRH FR A+PG+ G DKY+LNE HHSINQDTF+
Sbjct: 1180 RVPDSITGHPTLNLRARGRPAVYPVSAIYGQVHLYHACSL-SGEGETGSSHVCGVVTGGEGSGRGAGAWRHRFRQATPGTTGCDKYLLNECHHSINQDTFV 1279

[Close]

BLAST of mRNA_P-littoralis_Contig607.54.1 vs. uniprot
Match: A0A6H5KLQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ7_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 5.470e-23
Identity = 56/101 (55.45%), Postives = 67/101 (66.34%), Query Frame = 1

Query:  337 RVPDSVTGLPTLALQGRGRLAVFPVVAIRRQVHMYHQCPQQNGEGAGSHFH-CGPQRDQEGS----RKWRHNFRLASPGSGGNDKYILNEVHHSINQDTFL 624
            R PDSVTG PTL L+GRGR  V+P  AI RQVH+YH CP +N  GA    H C  +    GS    R WRH FR A+PG+ G D+Y++NE HHSI QDTF+
Sbjct:  724 RAPDSVTGHPTLQLRGRGRPVVYPADAIHRQVHLYHACPLRNEHGADDSSHVCKEEVVVGGSSGRRRVWRHYFREATPGTDGYDRYLVNECHHSITQDTFI 824

[Close]

BLAST of mRNA_P-littoralis_Contig607.54.1 vs. uniprot
Match: A0A6H5JZ87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ87_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 6.610e-22
Identity = 53/86 (61.63%), Postives = 59/86 (68.60%), Query Frame = 1

Query:  337 RVPDSVTGLPTLALQGRGRLAVFPVVAIRRQVHMYHQCPQQNGEGAGSHFHCGPQRDQEGSRKWRHNFRLASPGSG-GNDKYILNE 591
            RVPDS+TG PTL+L+GRGR  V+PV AIRRQVHMYHQCPQ      GS   CG  +     R WR  FRLA PGS  G DKY+LNE
Sbjct:  104 RVPDSITGHPTLSLRGRGRPKVYPVHAIRRQVHMYHQCPQGQDGAEGSRL-CGETKGAGRDRVWRLKFRLALPGSSNGYDKYLLNE 188

[Close]

BLAST of mRNA_P-littoralis_Contig607.54.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 7.950e-21
Identity = 58/100 (58.00%), Postives = 66/100 (66.00%), Query Frame = 1

Query:  337 RVPDSVTGLPTLALQGRGRLAVFPVVAIRRQVHMYHQCPQQNG--EGAGSHFHCGPQRDQEGSRK--WRHNFRLASPGSGGNDKYILNEVHHSINQDTFL 624
            RV DSVTG PTL L+ RGR  V+PV AI RQVH+YH CP  NG  E  GS F CG       S    WRH FR A+PG+ G D+Y+ NE HHSINQDTF+
Sbjct: 1285 RVTDSVTGHPTLQLRARGRPEVYPVSAIYRQVHLYHACPL-NGDPETDGSQF-CGVAGGGGSSHGGVWRHRFRQATPGTAGYDRYLYNECHHSINQDTFV 1382

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig607.54.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig607.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15


Match Name	E-value	Identity	Description
A0A6H5K465_9PHAE	1.260e-27	62.89	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRL1_9PHAE	5.310e-27	63.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRJ8_9PHAE	1.680e-25	59.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KNJ3_9PHAE	3.460e-25	60.40	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JYX6_9PHAE	5.260e-24	62.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KKN3_9PHAE	1.290e-23	57.43	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K0J4_9PHAE	1.820e-23	59.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KLQ7_9PHAE	5.470e-23	55.45	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZ87_9PHAE	6.610e-22	61.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K9M0_9PHAE	7.950e-21	58.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig607	contig	P-littoralis_Contig607:128960..129811 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	852
Hectar predicted targeting category	other localisation
Exons	1
Cds size	408

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791265.1506371-UTR-P-littoralis_Contig607:128959..129178	1680791265.1506371-UTR-P-littoralis_Contig607:128959..129178	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig607 128960..129178 +
1680791265.1773043-UTR-P-littoralis_Contig607:129586..129811	1680791265.1773043-UTR-P-littoralis_Contig607:129586..129811	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig607 129587..129811 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791265.1634142-CDS-P-littoralis_Contig607:129178..129586	1680791265.1634142-CDS-P-littoralis_Contig607:129178..129586	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig607 129179..129586 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig607.54.1	prot_P-littoralis_Contig607.54.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig607 129179..129586 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig607:128960..129811+
coding sequence from alignment at P-littoralis_Contig607:128960..129811+

protein sequence of mRNA_P-littoralis_Contig607.54.1

>prot_P-littoralis_Contig607.54.1 ID=prot_P-littoralis_Contig607.54.1|Name=mRNA_P-littoralis_Contig607.54.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=136bp
MLHTSCIHYSGVHIYQYVCICNCGIHVLYTISFTAVPFLRVPDSVTGLPT
LALQGRGRLAVFPVVAIRRQVHMYHQCPQQNGEGAGSHFHCGPQRDQEGS
RKWRHNFRLASPGSGGNDKYILNEVHHSINQDTFL*

mRNA from alignment at P-littoralis_Contig607:128960..129811+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig607.54.1 ID=mRNA_P-littoralis_Contig607.54.1|Name=mRNA_P-littoralis_Contig607.54.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=852bp|location=Sequence derived from alignment at P-littoralis_Contig607:128960..129811+ (Pylaiella littoralis U1_48)
CATGGCGGAAGTGTTGGTCGGCATCAACGCGAGGGCCCTGCCTCTGACGC
CGCCGCCAACACTACGGGTATGTGCAGTGGAGTATAGTAGAACAAGCAGT
GTATCGCTATTTGTCGCATACGGTAGATACCACCACCCTCATATATCTTT
TCGACATCGCTGGGGACTCTGCTGACCCGTGCATAAAAAGCACGGTACGA
TTTACTTTGGTCATATGATATGTTACATACATCATGTATACATTACTCCG
GAGTACATATATACCAGTATGTGTGTATATGCAACTGCGGTATACATGTA
TTATATACCATATCGTTCACAGCAGTGCCTTTTCTTCGTGTGCCAGATTC
TGTCACCGGCCTGCCGACACTGGCGTTGCAGGGCCGTGGCCGACTTGCGG
TGTTCCCCGTGGTCGCCATCCGCCGCCAGGTACACATGTACCATCAATGT
CCGCAGCAAAACGGCGAGGGGGCCGGTAGTCACTTTCACTGTGGCCCGCA
GCGAGATCAAGAAGGATCGCGTAAATGGCGACACAACTTTCGGCTTGCAT
CGCCGGGGAGTGGCGGTAATGACAAGTACATCTTAAACGAGGTTCACCAC
AGCATCAACCAGGACACGTTCCTGTGATGAAAACATTTCGTCAGGCGGGT
GCACATGTTCAGAATAAAGATGATCAGTTTGTTCTTGATGTCCATGCCCA
CGTGCGATGAAGGTGAGCGCTCAAAGTGGCGTCGCTATGACGACGAAGTG
GATCGTGAGTCTTTTTTTTTTTGTGAGGGGAGGGGGGTCCCGGGGGGTAG
GTGGGGTGCCCTACTGGGGCCTAACTCCTCGAAGAATGCGAGATTTTCAA
AA

Coding sequence (CDS) from alignment at P-littoralis_Contig607:128960..129811+

>mRNA_P-littoralis_Contig607.54.1 ID=mRNA_P-littoralis_Contig607.54.1|Name=mRNA_P-littoralis_Contig607.54.1|organism=Pylaiella littoralis U1_48|type=CDS|length=408bp|location=Sequence derived from alignment at P-littoralis_Contig607:128960..129811+ (Pylaiella littoralis U1_48)
ATGTTACATACATCATGTATACATTACTCCGGAGTACATATATACCAGTA
TGTGTGTATATGCAACTGCGGTATACATGTATTATATACCATATCGTTCA
CAGCAGTGCCTTTTCTTCGTGTGCCAGATTCTGTCACCGGCCTGCCGACA
CTGGCGTTGCAGGGCCGTGGCCGACTTGCGGTGTTCCCCGTGGTCGCCAT
CCGCCGCCAGGTACACATGTACCATCAATGTCCGCAGCAAAACGGCGAGG
GGGCCGGTAGTCACTTTCACTGTGGCCCGCAGCGAGATCAAGAAGGATCG
CGTAAATGGCGACACAACTTTCGGCTTGCATCGCCGGGGAGTGGCGGTAA
TGACAAGTACATCTTAAACGAGGTTCACCACAGCATCAACCAGGACACGT
TCCTGTGA