mRNA_P-littoralis_Contig607.52.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig607.52.1
Unique NamemRNA_P-littoralis_Contig607.52.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig607.52.1 vs. uniprot
Match: A0A6H5K1N6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N6_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 7.080e-38
Identity = 90/173 (52.02%), Postives = 121/173 (69.94%), Query Frame = 2 
Query: 2390 MTKKQIKEIQRQYATYNTGVFMKLPLLPLGE--DVNELVQFADTLSHVVEECRLGVGDHS-DSQWVRGWDRPVEKHVINAISSSRAGSTQEVLALKRKVNTAFIQTRAQMDKGVQGPQALDFLIRVLSKELSTVSPNAVVSELQNLVVAPGTPFKEYMSTLRSLVQNARSVGH 2899
            ++K+Q+  I+++YATY+T   M+LPLL  G+   V E V  + TL   VEE RLG GD+S  S WVRGWD  +EKHV+N++SS    +  + L LK K+ ++F QTR Q+D G+ G +AL+FL+RVL++ LS  +P  VV  LQNL V  GTPF EYM+TLR+LVQNA SVGH
Sbjct:  449 LSKEQVTAIRQKYATYSTANLMRLPLLA-GQRMSVAETVSLSSTLVKNVEELRLGAGDNSKSSDWVRGWDIALEKHVLNSVSSRLPNA--QGLDLKAKITSSFSQTRQQLDNGMAGREALNFLVRVLTRTLSMATPQHVVFALQNLEVDAGTPFSEYMNTLRALVQNAMSVGH 618
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BLAST of mRNA_P-littoralis_Contig607.52.1 vs. uniprot
Match: A0A6H5KNG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG1_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 8.550e-23
Identity = 60/154 (38.96%), Postives = 89/154 (57.79%), Query Frame = 2 
Query: 2441 TGVFMKLPLLPL--GEDVNELVQFADTLSHVVEECRLGVGDHSDSQWVRGWDRPVEKHVINAISSSRAGSTQEVLALKRKVNTAFIQTRAQMDKGVQGPQALDFLIRVLSKELSTVSPNAVVSELQNLVVAPGTPFKEYMSTLRSLVQNARSVG 2896
            T   + +PL PL  G+DV ELVQ +  ++  VE+ R    D     WVRGW++ +E+H+IN++  + A S     A K+ +  A  Q+   MD G+ GP AL  L+R +   LSTV+P  V+ +LQN  V  GT FK Y+  L+ LV++ + VG
Sbjct:    3 TKNLITMPLTPLQNGDDVVELVQLSSAITKSVEQIRASAQDFDSDHWVRGWEKVLERHLINSVRKNHAKSA----ATKQILVAAVNQSVRAMDSGMSGPDALQLLLRAVCSGLSTVTPALVLQQLQNFAVPAGTTFKAYLEDLKVLVESVQMVG 152
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig607.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1N6_9PHAE7.080e-3852.02CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KNG1_9PHAE8.550e-2338.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig607contigP-littoralis_Contig607:124479..127890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2907
Hectar predicted targeting categoryother localisation
Exons2
Cds size1659
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791265.0911858-CDS-P-littoralis_Contig607:124478..1261371680791265.0911858-CDS-P-littoralis_Contig607:124478..126137Pylaiella littoralis U1_48CDSP-littoralis_Contig607 124479..126137 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791265.101734-UTR-P-littoralis_Contig607:126137..1272801680791265.101734-UTR-P-littoralis_Contig607:126137..127280Pylaiella littoralis U1_48UTRP-littoralis_Contig607 126138..127280 -
1680791265.115673-UTR-P-littoralis_Contig607:127787..1278901680791265.115673-UTR-P-littoralis_Contig607:127787..127890Pylaiella littoralis U1_48UTRP-littoralis_Contig607 127788..127890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig607.52.1prot_P-littoralis_Contig607.52.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig607 124479..126137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig607.52.1

>prot_P-littoralis_Contig607.52.1 ID=prot_P-littoralis_Contig607.52.1|Name=mRNA_P-littoralis_Contig607.52.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=553bp
MKTSSKSTRSVRARSQEACVVAGKPADTLGEQLTPPQLEQRARGGHSKDQ
KSHLTKNDDASEYTIPKKVPIQTRQVFNESVYERLEQQYPDLDGAALGDM
YLKEVAAASDAQAQETQRANKKAAFQAQVRLGMQPSAAVAPAPQVAQTEV
GLGQVEESPFPSRGGGGGGNQSFSPRGRGGGRFFGGRGGGRFNRGKRFQG
GNRGYGGEGSHHYGPQEQAFPFDQPMHGDSRTIYGYPPAHEGERTKRWEE
DEAEVTSKAHLKALFEISPRLKEFLRAHEALTGEGAVETPGHSDMQSVMN
QPAVSTDCQPKVLPQVKVEPSSTQPEKVTQCVKTEPPSTHSTAVSATVKP
TTNIATHVVDPSATVAPPAAPAANTEDSPVDMTKKQIKEIQRQYATYNTG
VFMKLPLLPLGEDVNELVQFADTLSHVVEECRLGVGDHSDSQWVRGWDRP
VEKHVINAISSSRAGSTQEVLALKRKVNTAFIQTRAQMDKGVQGPQALDF
LIRVLSKELSTVSPNAVVSELQNLVVAPGTPFKEYMSTLRSLVQNARSVG
HIA
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mRNA from alignment at P-littoralis_Contig607:124479..127890-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig607.52.1 ID=mRNA_P-littoralis_Contig607.52.1|Name=mRNA_P-littoralis_Contig607.52.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3412bp|location=Sequence derived from alignment at P-littoralis_Contig607:124479..127890- (Pylaiella littoralis U1_48)
AGGGTTCGAGCACCCTTTCGCACGTCACTGGCACCGAAGGAGTTGGGTCG
TGGATCTCGCCTTCCCGTTCGTGTGTTGTTCAACATGTCCGACTCTGGTC
AAGGTGAGAAACTAAGAGTGGTGAACTCCCCTGACGGGAGAGAGAAAGAT
TCAGGGAGGAAGGAGAAAGACAAAGGTAGTAGGATGGCTGCCTCACGAGA
GGGTAGCAATGGTAGCTCACGCGAGGATAGCAACAGTAGCCAGAGTGGCA
CTGGTGCACGTGGTTCCCGTGACGCGGGCAGTCGGAAGGACCAGAGGGAG
CAACAGGATGTTGTTTCACCGACGGGGATGGTTTCTGAAGGGGACCAAAG
GGGCAATACCCCGGTCATCGGAAATATTTCCGACAGTGTGCGCGGTGATG
ATCGTACTTCTCACCCGGTGGGCAGTAGTGCGCCGCTGCGTGGTACCGGA
TCACGTCTCAGTGCGGACCAACGGCTTGTGCGTGATGCTCAGGCTGAGCG
TGGTGGTCGTGGTGTGGTATCGTCCTCGCGAGTCACGCGATCTAAAAGTG
TTGGTGGAGGTGGTGGTGATGTTCACTGGTCAATTCTCTCTCTCAATCCG
CTGATGGCAGGGGCTTATCAGGGTCGAGACCAAGTGTTTCCGGAACAAGC
ACTCAATGGTGGTTTGCGAGCGGGTCAGCTTGATTCGGGTCCGGCTGAGG
TTCCGCCCGTAATCCAGTCGTTTGGGGAGGCAGAGAATCTTGATGCGTCG
GGAGAGGCTGAGGCCGCATCCGTGGGCGCCCCCGCTAATGCTGGGGGTGA
CGAGGTGAGCTCCCACCACATGCAAGAGTTGATGTCGGGTGTTTTCTTGG
ATTTTGTTCATGGTCTTTCCATGAAGGAAAAAGCAAAGCTGATGCGTTTG
AGTGGGATGCTGCAAAAGGAAGACGAGTTAGACGTACGTCCTGTGTCGAG
GCCACATTCACAGCCTGTGAGTGGGGGAATGTATTCCACACAACAACATG
CACGCGTCCAGGATACGGTAACGACGATGGGTGCACGCGGTAGTTCTCAC
ATGCATGAGGATGAAATGTTCGCAAGACAGTTGTTGCATGACGAACGCCT
AGCAGCGGATAGAGCTGCAGCAGAACACATGCTGCAGGATGAAGCATATG
CTCGCACACTCTCAGAGAGTAGCTGTGTTTCACCCTCGGGTTCAGTCGGG
ACTCCCGTGTGGGTAAAGGGAAGTAGGTTTGCTCCTCTAGCGGATAGGGA
TGATGACGAAGTACCGGTCTTGTGTTCACCTCCATGGCAGGTCGTTGGGG
CGAAAGCCAAAGCAGGGCAAATTGCGGAAAACATGAAGATGGCGAAGGAG
TTGCTCCTCCGGAATAAGGAAGAGTTTCGTGCAGCCGACGTGTACTGCAA
AAGCGTTGAGAAGAACATGGAGGCAGCTCAGTCTGAACTACACGCACAGC
TCACAACTATCAAACACACCACCGTTGACGCCCAACACAAAGTAGAGACA
GCGCAGGTAGCCCATGACAACGCTATCGAACAAGAACGTTTAGCCAGCCT
CCAACTCATCAAGGACGAACGCGCAGCAGTTGCAGTACAGCAAACGCTTT
CCATGTCCCAGCGTGTCAAGGCGGCTAAAGTAGCATCCACAACCGAGTCT
CGTAGAAAGCTGATAGAGGCCCAGAGACTTCTCTCCGCACGCAAAGGCCT
GAGTGCGAACCCTGCCGTGGTAGCTGAAGTAAAGGCACTGCAGCAAAAGG
TGGATGAAAACGTCCTCAAAGTCAACGCGCTCCGTAAGAGCAAGGAGTCA
GGAGGCTTGTGTTGTTGCTGGCAAACCGGCCGATACACTCGGTGAGCAAC
TCACACCACCACAACTAGAACAGCGAGCTAGGGGAGGACACTCCAAAGAC
CAAAAATCCCACCTCACGAAAAACGACGACGCGTCTGAATACACAATTCC
GAAGAAGGTGCCAATTCAGACACGACAAGTATTTAACGAAAGCGTGTATG
AAAGGTTGGAACAGCAGTACCCAGATTTGGATGGGGCCGCGCTCGGTGAC
ATGTACTTGAAAGAGGTAGCTGCCGCCAGTGATGCTCAAGCGCAGGAAAC
GCAGAGAGCCAACAAAAAGGCCGCTTTCCAGGCTCAGGTTAGATTGGGGA
TGCAGCCATCTGCAGCGGTTGCACCCGCCCCACAGGTAGCTCAAACAGAG
GTAGGGCTAGGTCAGGTAGAAGAGTCGCCTTTTCCCTCTCGTGGCGGTGG
AGGTGGAGGAAACCAAAGTTTCTCTCCGCGTGGTAGGGGTGGTGGACGGT
TCTTTGGTGGACGCGGTGGGGGGCGCTTTAACAGGGGTAAGCGTTTCCAG
GGTGGTAACAGGGGGTACGGAGGTGAAGGCAGTCACCACTACGGGCCCCA
AGAGCAAGCCTTCCCGTTTGATCAGCCCATGCATGGCGATTCCCGCACCA
TCTACGGGTATCCGCCGGCGCACGAGGGCGAAAGGACCAAAAGGTGGGAA
GAGGATGAAGCGGAGGTTACGAGTAAGGCACACTTGAAGGCTCTTTTTGA
AATCTCTCCACGATTGAAGGAATTTTTGCGTGCGCACGAAGCACTCACCG
GCGAGGGTGCGGTAGAAACACCAGGTCACAGTGATATGCAATCAGTGATG
AACCAACCCGCAGTAAGCACAGATTGCCAGCCGAAAGTATTGCCGCAGGT
CAAGGTAGAGCCGTCATCGACTCAACCCGAGAAAGTCACACAGTGTGTCA
AGACGGAGCCCCCGTCGACCCACTCCACTGCAGTATCCGCAACCGTGAAA
CCAACCACAAACATCGCAACGCATGTAGTAGATCCTTCTGCTACCGTAGC
ACCTCCCGCAGCACCAGCCGCAAACACAGAGGACAGTCCAGTGGACATGA
CCAAAAAGCAGATCAAAGAGATTCAAAGGCAGTATGCGACCTACAACACG
GGTGTTTTCATGAAATTGCCTCTGCTTCCGTTGGGTGAGGACGTTAACGA
ACTGGTCCAATTCGCGGACACTCTTAGTCATGTTGTGGAAGAGTGCAGGC
TTGGTGTGGGCGACCACAGTGACTCCCAGTGGGTAAGGGGGTGGGACCGA
CCGGTGGAAAAACATGTGATTAATGCAATTTCTTCCTCTCGTGCGGGATC
CACGCAGGAAGTTCTCGCGCTGAAGCGCAAGGTTAACACGGCCTTCATTC
AGACGAGGGCACAGATGGACAAGGGGGTTCAAGGGCCGCAGGCTCTGGAT
TTCCTTATTCGAGTTTTGAGCAAGGAGCTAAGTACGGTGTCCCCAAATGC
TGTAGTATCAGAACTGCAGAATTTAGTAGTAGCTCCGGGAACGCCGTTCA
AGGAATACATGAGTACGTTGCGGTCGTTGGTTCAAAACGCGAGAAGTGTA
GGGCACATTGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig607:124479..127890-

>mRNA_P-littoralis_Contig607.52.1 ID=mRNA_P-littoralis_Contig607.52.1|Name=mRNA_P-littoralis_Contig607.52.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1659bp|location=Sequence derived from alignment at P-littoralis_Contig607:124479..127890- (Pylaiella littoralis U1_48)
ATGAAAACGTCCTCAAAGTCAACGCGCTCCGTAAGAGCAAGGAGTCAGGA
GGCTTGTGTTGTTGCTGGCAAACCGGCCGATACACTCGGTGAGCAACTCA
CACCACCACAACTAGAACAGCGAGCTAGGGGAGGACACTCCAAAGACCAA
AAATCCCACCTCACGAAAAACGACGACGCGTCTGAATACACAATTCCGAA
GAAGGTGCCAATTCAGACACGACAAGTATTTAACGAAAGCGTGTATGAAA
GGTTGGAACAGCAGTACCCAGATTTGGATGGGGCCGCGCTCGGTGACATG
TACTTGAAAGAGGTAGCTGCCGCCAGTGATGCTCAAGCGCAGGAAACGCA
GAGAGCCAACAAAAAGGCCGCTTTCCAGGCTCAGGTTAGATTGGGGATGC
AGCCATCTGCAGCGGTTGCACCCGCCCCACAGGTAGCTCAAACAGAGGTA
GGGCTAGGTCAGGTAGAAGAGTCGCCTTTTCCCTCTCGTGGCGGTGGAGG
TGGAGGAAACCAAAGTTTCTCTCCGCGTGGTAGGGGTGGTGGACGGTTCT
TTGGTGGACGCGGTGGGGGGCGCTTTAACAGGGGTAAGCGTTTCCAGGGT
GGTAACAGGGGGTACGGAGGTGAAGGCAGTCACCACTACGGGCCCCAAGA
GCAAGCCTTCCCGTTTGATCAGCCCATGCATGGCGATTCCCGCACCATCT
ACGGGTATCCGCCGGCGCACGAGGGCGAAAGGACCAAAAGGTGGGAAGAG
GATGAAGCGGAGGTTACGAGTAAGGCACACTTGAAGGCTCTTTTTGAAAT
CTCTCCACGATTGAAGGAATTTTTGCGTGCGCACGAAGCACTCACCGGCG
AGGGTGCGGTAGAAACACCAGGTCACAGTGATATGCAATCAGTGATGAAC
CAACCCGCAGTAAGCACAGATTGCCAGCCGAAAGTATTGCCGCAGGTCAA
GGTAGAGCCGTCATCGACTCAACCCGAGAAAGTCACACAGTGTGTCAAGA
CGGAGCCCCCGTCGACCCACTCCACTGCAGTATCCGCAACCGTGAAACCA
ACCACAAACATCGCAACGCATGTAGTAGATCCTTCTGCTACCGTAGCACC
TCCCGCAGCACCAGCCGCAAACACAGAGGACAGTCCAGTGGACATGACCA
AAAAGCAGATCAAAGAGATTCAAAGGCAGTATGCGACCTACAACACGGGT
GTTTTCATGAAATTGCCTCTGCTTCCGTTGGGTGAGGACGTTAACGAACT
GGTCCAATTCGCGGACACTCTTAGTCATGTTGTGGAAGAGTGCAGGCTTG
GTGTGGGCGACCACAGTGACTCCCAGTGGGTAAGGGGGTGGGACCGACCG
GTGGAAAAACATGTGATTAATGCAATTTCTTCCTCTCGTGCGGGATCCAC
GCAGGAAGTTCTCGCGCTGAAGCGCAAGGTTAACACGGCCTTCATTCAGA
CGAGGGCACAGATGGACAAGGGGGTTCAAGGGCCGCAGGCTCTGGATTTC
CTTATTCGAGTTTTGAGCAAGGAGCTAAGTACGGTGTCCCCAAATGCTGT
AGTATCAGAACTGCAGAATTTAGTAGTAGCTCCGGGAACGCCGTTCAAGG
AATACATGAGTACGTTGCGGTCGTTGGTTCAAAACGCGAGAAGTGTAGGG
CACATTGCG
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