mRNA_P-littoralis_Contig607.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig607.10.1
Unique NamemRNA_P-littoralis_Contig607.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig607.10.1 vs. uniprot
Match: A0A6H5KHU9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHU9_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 3.330e-5
Identity = 33/95 (34.74%), Postives = 46/95 (48.42%), Query Frame = 1 
Query:    4 PLTRRAIRELAPGRATEGMADPRRMGTTRSSTRHQAYSPLPQLVEAPPEIDDDDELSGQMGVVSMMDRECLLAMLSAHAAVDSRR------GVGE 270
            PL+  A+R+L PG+ TEGM  PR  G TRS T+H                          G++SM+D+  L++ML A  AV+  R      G+GE
Sbjct:  528 PLSAHAMRQLRPGKKTEGMKYPRLPGRTRSGTKHST------------------------GLISMLDKNTLVSMLEAQRAVEEERREPGGAGIGE 598
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig607.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHU9_9PHAE3.330e-534.74Integrase catalytic domain-containing protein n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig607contigP-littoralis_Contig607:28331..28670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size342
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791264.9096956-CDS-P-littoralis_Contig607:28331..286701680791264.9096956-CDS-P-littoralis_Contig607:28331..28670Pylaiella littoralis U1_48CDSP-littoralis_Contig607 28332..28670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig607.10.1prot_P-littoralis_Contig607.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig607 28332..28670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig607.10.1

>prot_P-littoralis_Contig607.10.1 ID=prot_P-littoralis_Contig607.10.1|Name=mRNA_P-littoralis_Contig607.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
EPLTRRAIRELAPGRATEGMADPRRMGTTRSSTRHQAYSPLPQLVEAPPE
IDDDDELSGQMGVVSMMDRECLLAMLSAHAAVDSRRGVGEFGGNKESGDG
GGLPKGFLARLAS
back to top

mRNA from alignment at P-littoralis_Contig607:28331..28670-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig607.10.1 ID=mRNA_P-littoralis_Contig607.10.1|Name=mRNA_P-littoralis_Contig607.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=340bp|location=Sequence derived from alignment at P-littoralis_Contig607:28331..28670- (Pylaiella littoralis U1_48)
GAACCTTTGACTCGGAGGGCGATACGAGAACTCGCACCCGGGAGGGCGAC
GGAGGGCATGGCCGACCCTCGGCGGATGGGGACGACGAGATCTTCAACGA
GACACCAGGCCTATTCTCCTTTGCCGCAGCTGGTGGAAGCACCGCCGGAA
ATTGATGACGACGATGAACTTTCAGGGCAGATGGGCGTTGTTTCCATGAT
GGACAGAGAGTGCCTGCTCGCGATGCTCTCCGCGCACGCGGCGGTCGACA
GCCGCCGGGGTGTTGGGGAGTTTGGGGGGAACAAAGAGTCTGGAGATGGT
GGAGGTTTGCCTAAGGGATTTTTGGCAAGACTGGCCTCTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig607:28331..28670-

>mRNA_P-littoralis_Contig607.10.1 ID=mRNA_P-littoralis_Contig607.10.1|Name=mRNA_P-littoralis_Contig607.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig607:28331..28670- (Pylaiella littoralis U1_48)
GAACCTTTGACTCGGAGGGCGATACGAGAACTCGCACCCGGGAGGGCGAC
GGAGGGCATGGCCGACCCTCGGCGGATGGGGACGACGAGATCTTCAACGA
GACACCAGGCCTATTCTCCTTTGCCGCAGCTGGTGGAAGCACCGCCGGAA
ATTGATGACGACGATGAACTTTCAGGGCAGATGGGCGTTGTTTCCATGAT
GGACAGAGAGTGCCTGCTCGCGATGCTCTCCGCGCACGCGGCGGTCGACA
GCCGCCGGGGTGTTGGGGAGTTTGGGGGGAACAAAGAGTCTGGAGATGGT
GGAGGTTTGCCTAAGGGATTTTTGGCAAGACTGGCCTCT
back to top