mRNA_P-littoralis_Contig607.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig607.37.1
Unique NamemRNA_P-littoralis_Contig607.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig607.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig607contigP-littoralis_Contig607:91646..92198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size553
Hectar predicted targeting categorysignal anchor
Exons1
Cds size501
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791264.8009567-UTR-P-littoralis_Contig607:91645..916771680791264.8009567-UTR-P-littoralis_Contig607:91645..91677Pylaiella littoralis U1_48UTRP-littoralis_Contig607 91646..91677 +
1680791264.8322437-UTR-P-littoralis_Contig607:92178..921981680791264.8322437-UTR-P-littoralis_Contig607:92178..92198Pylaiella littoralis U1_48UTRP-littoralis_Contig607 92179..92198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791264.8156369-CDS-P-littoralis_Contig607:91677..921781680791264.8156369-CDS-P-littoralis_Contig607:91677..92178Pylaiella littoralis U1_48CDSP-littoralis_Contig607 91678..92178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig607.37.1prot_P-littoralis_Contig607.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig607 91678..92178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig607.37.1

>prot_P-littoralis_Contig607.37.1 ID=prot_P-littoralis_Contig607.37.1|Name=mRNA_P-littoralis_Contig607.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=167bp
MLFDDKLVSSFCRAFLSFVVRLLFVVMMLMLSVFGLLLVVKFSMLLLTLM
LMVICGGCCLFVFLPVVDDVGSAPLGHLVLVVVCVVDAVAAAVGVVVRRY
LEYSSLCNRPSCLWRSPFCVLLWSVLLVLLVFLVREENRNSDKHASTASC
GAEARGKILWYIGLCI*
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mRNA from alignment at P-littoralis_Contig607:91646..92198+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig607.37.1 ID=mRNA_P-littoralis_Contig607.37.1|Name=mRNA_P-littoralis_Contig607.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=553bp|location=Sequence derived from alignment at P-littoralis_Contig607:91646..92198+ (Pylaiella littoralis U1_48)
CCAAGCTCGTTTTTCCTGTACGTATTTGCACTATGCTGTTTGACGACAAA
CTCGTCAGTAGTTTCTGTCGTGCTTTTCTATCTTTCGTTGTCAGGTTGCT
ATTTGTGGTGATGATGTTAATGTTGTCGGTGTTTGGGTTGCTACTGGTTG
TGAAGTTTTCAATGTTATTGTTGACGTTGATGTTGATGGTGATATGTGGA
GGTTGTTGTCTCTTTGTGTTTCTTCCTGTTGTTGATGATGTTGGTAGTGC
TCCTCTTGGTCATCTTGTTCTTGTAGTTGTTTGCGTTGTTGATGCCGTTG
CTGCCGCGGTTGGTGTTGTCGTACGTCGATATTTGGAGTATTCGTCGTTG
TGCAACAGACCTTCATGTTTATGGCGCTCTCCTTTCTGTGTTTTGTTGTG
GAGCGTGTTGTTGGTGTTGTTGGTGTTTTTGGTGCGTGAAGAAAACAGGA
ATAGCGACAAGCACGCGTCCACTGCAAGTTGTGGTGCTGAGGCACGAGGA
AAAATCTTGTGGTATATCGGCCTGTGTATATAGGTCTGCCGCTGGCCTGT
GAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig607:91646..92198+

>mRNA_P-littoralis_Contig607.37.1 ID=mRNA_P-littoralis_Contig607.37.1|Name=mRNA_P-littoralis_Contig607.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=501bp|location=Sequence derived from alignment at P-littoralis_Contig607:91646..92198+ (Pylaiella littoralis U1_48)
ATGCTGTTTGACGACAAACTCGTCAGTAGTTTCTGTCGTGCTTTTCTATC
TTTCGTTGTCAGGTTGCTATTTGTGGTGATGATGTTAATGTTGTCGGTGT
TTGGGTTGCTACTGGTTGTGAAGTTTTCAATGTTATTGTTGACGTTGATG
TTGATGGTGATATGTGGAGGTTGTTGTCTCTTTGTGTTTCTTCCTGTTGT
TGATGATGTTGGTAGTGCTCCTCTTGGTCATCTTGTTCTTGTAGTTGTTT
GCGTTGTTGATGCCGTTGCTGCCGCGGTTGGTGTTGTCGTACGTCGATAT
TTGGAGTATTCGTCGTTGTGCAACAGACCTTCATGTTTATGGCGCTCTCC
TTTCTGTGTTTTGTTGTGGAGCGTGTTGTTGGTGTTGTTGGTGTTTTTGG
TGCGTGAAGAAAACAGGAATAGCGACAAGCACGCGTCCACTGCAAGTTGT
GGTGCTGAGGCACGAGGAAAAATCTTGTGGTATATCGGCCTGTGTATATA
G
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