mRNA_P-littoralis_Contig607.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig607.7.1
Unique NamemRNA_P-littoralis_Contig607.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig607.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig607contigP-littoralis_Contig607:23448..24039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size592
Hectar predicted targeting categoryother localisation
Exons1
Cds size399
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791264.6822147-UTR-P-littoralis_Contig607:23447..235651680791264.6822147-UTR-P-littoralis_Contig607:23447..23565Pylaiella littoralis U1_48UTRP-littoralis_Contig607 23448..23565 +
1680791264.7177017-UTR-P-littoralis_Contig607:23964..240391680791264.7177017-UTR-P-littoralis_Contig607:23964..24039Pylaiella littoralis U1_48UTRP-littoralis_Contig607 23965..24039 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791264.7010834-CDS-P-littoralis_Contig607:23565..239641680791264.7010834-CDS-P-littoralis_Contig607:23565..23964Pylaiella littoralis U1_48CDSP-littoralis_Contig607 23566..23964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig607.7.1prot_P-littoralis_Contig607.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig607 23566..23964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig607.7.1

>prot_P-littoralis_Contig607.7.1 ID=prot_P-littoralis_Contig607.7.1|Name=mRNA_P-littoralis_Contig607.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
MPGVAQPYALSWVAHSCACFVWFSGEWGLACSPAGGKAWSQKRSTLDNRW
VDGCHLCVPSTDDDGGMFHPAFGRFQSLASQQTARIAPAVSIRGALEIVV
ESWPTTRRLVLAPSSSPLQSIRASKTKTTSTS*
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mRNA from alignment at P-littoralis_Contig607:23448..24039+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig607.7.1 ID=mRNA_P-littoralis_Contig607.7.1|Name=mRNA_P-littoralis_Contig607.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=592bp|location=Sequence derived from alignment at P-littoralis_Contig607:23448..24039+ (Pylaiella littoralis U1_48)
GGGTAGTCTAGAGGGCTTacgACAAGCAAACGTCACCCCATGACCGCCGG
GTAGCCCTCCTAGACTCTCCAGGGACGTaAACCAGCCTATTGCGAGCCCT
TCTTCAGAGCCCTGCTGTATGCCTGGGGTTGCGCAACCGTACGCTTTATC
TTGGGTTGCTCACAGCTGCGCATGTTTTGTCTGGTTCTCGGGGGAATGGG
GGCTGGCTTGTAGCCCGGCTGGTGGAAAAGCCTGGTCCCAGAAGCGTTCG
ACACTAGACAACAGATGGGTGGATGGATGCCATCTTTGCGTACCGTCTAC
TGACGATGACGGCGGTATGTTTCATCCCGCCTTCGGCCGATTTCAAAGCT
TGGCATCTCAACAGACAGCAAGAATAGCGCCAGCAGTGTCGATAAGGGGG
GCGTTGGAAATTGTCGTCGAGAGCTGGCCAACAACACGTCGTTTGGTACT
GGCACCCTCTTCCTCTCCGTTGCAGAGTATTCGAGCGTCGAAAACCAAAA
CCACTTCCACGTCGTAAAGATATATTTAGGACAGGTGCACGAGACAGGGC
ATTCACCTAATGAAATGGATTCAGCGACACGTTTGAACCTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig607:23448..24039+

>mRNA_P-littoralis_Contig607.7.1 ID=mRNA_P-littoralis_Contig607.7.1|Name=mRNA_P-littoralis_Contig607.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig607:23448..24039+ (Pylaiella littoralis U1_48)
ATGCCTGGGGTTGCGCAACCGTACGCTTTATCTTGGGTTGCTCACAGCTG
CGCATGTTTTGTCTGGTTCTCGGGGGAATGGGGGCTGGCTTGTAGCCCGG
CTGGTGGAAAAGCCTGGTCCCAGAAGCGTTCGACACTAGACAACAGATGG
GTGGATGGATGCCATCTTTGCGTACCGTCTACTGACGATGACGGCGGTAT
GTTTCATCCCGCCTTCGGCCGATTTCAAAGCTTGGCATCTCAACAGACAG
CAAGAATAGCGCCAGCAGTGTCGATAAGGGGGGCGTTGGAAATTGTCGTC
GAGAGCTGGCCAACAACACGTCGTTTGGTACTGGCACCCTCTTCCTCTCC
GTTGCAGAGTATTCGAGCGTCGAAAACCAAAACCACTTCCACGTCGTAA
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