mRNA_P-littoralis_Contig607.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig607.50.1
Unique NamemRNA_P-littoralis_Contig607.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig607.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig607contigP-littoralis_Contig607:123649..127170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size195
Hectar predicted targeting categoryother localisation
Exons2
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791264.5731802-CDS-P-littoralis_Contig607:123648..1237591680791264.5731802-CDS-P-littoralis_Contig607:123648..123759Pylaiella littoralis U1_48CDSP-littoralis_Contig607 123649..123759 -
1680791264.585419-CDS-P-littoralis_Contig607:127086..1271701680791264.585419-CDS-P-littoralis_Contig607:127086..127170Pylaiella littoralis U1_48CDSP-littoralis_Contig607 127087..127170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig607.50.1prot_P-littoralis_Contig607.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig607 123649..127170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig607.50.1

>prot_P-littoralis_Contig607.50.1 ID=prot_P-littoralis_Contig607.50.1|Name=mRNA_P-littoralis_Contig607.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=65bp
FGEAENLDASGEAEAASVGAPANAGGDECSGRFWDPSVYERSAGPVQSRE
KNYFGRCREYSVYG*
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mRNA from alignment at P-littoralis_Contig607:123649..127170-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig607.50.1 ID=mRNA_P-littoralis_Contig607.50.1|Name=mRNA_P-littoralis_Contig607.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3522bp|location=Sequence derived from alignment at P-littoralis_Contig607:123649..127170- (Pylaiella littoralis U1_48)
TTTGGGGAGGCAGAGAATCTTGATGCGTCGGGAGAGGCTGAGGCCGCATC
CGTGGGCGCCCCCGCTAATGCTGGGGGTGACGAGGTGAGCTCCCACCACA
TGCAAGAGTTGATGTCGGGTGTTTTCTTGGATTTTGTTCATGGTCTTTCC
ATGAAGGAAAAAGCAAAGCTGATGCGTTTGAGTGGGATGCTGCAAAAGGA
AGACGAGTTAGACGTACGTCCTGTGTCGAGGCCACATTCACAGCCTGTGA
GTGGGGGAATGTATTCCACACAACAACATGCACGCGTCCAGGATACGGTA
ACGACGATGGGTGCACGCGGTAGTTCTCACATGCATGAGGATGAAATGTT
CGCAAGACAGTTGTTGCATGACGAACGCCTAGCAGCGGATAGAGCTGCAG
CAGAACACATGCTGCAGGATGAAGCATATGCTCGCACACTCTCAGAGAGT
AGCTGTGTTTCACCCTCGGGTTCAGTCGGGACTCCCGTGTGGGTAAAGGG
AAGTAGGTTTGCTCCTCTAGCGGATAGGGATGATGACGAAGTACCGGTCT
TGTGTTCACCTCCATGGCAGGTCGTTGGGGCGAAAGCCAAAGCAGGGCAA
ATTGCGGAAAACATGAAGATGGCGAAGGAGTTGCTCCTCCGGAATAAGGA
AGAGTTTCGTGCAGCCGACGTGTACTGCAAAAGCGTTGAGAAGAACATGG
AGGCAGCTCAGTCTGAACTACACGCACAGCTCACAACTATCAAACACACC
ACCGTTGACGCCCAACACAAAGTAGAGACAGCGCAGGTAGCCCATGACAA
CGCTATCGAACAAGAACGTTTAGCCAGCCTCCAACTCATCAAGGACGAAC
GCGCAGCAGTTGCAGTACAGCAAACGCTTTCCATGTCCCAGCGTGTCAAG
GCGGCTAAAGTAGCATCCACAACCGAGTCTCGTAGAAAGCTGATAGAGGC
CCAGAGACTTCTCTCCGCACGCAAAGGCCTGAGTGCGAACCCTGCCGTGG
TAGCTGAAGTAAAGGCACTGCAGCAAAAGGTGGATGAAAACGTCCTCAAA
GTCAACGCGCTCCGTAAGAGCAAGGAGTCAGGAGGCTTGTGTTGTTGCTG
GCAAACCGGCCGATACACTCGGTGAGCAACTCACACCACCACAACTAGAA
CAGCGAGCTAGGGGAGGACACTCCAAAGACCAAAAATCCCACCTCACGAA
AAACGACGACGCGTCTGAATACACAATTCCGAAGAAGGTGCCAATTCAGA
CACGACAAGTATTTAACGAAAGCGTGTATGAAAGGTTGGAACAGCAGTAC
CCAGATTTGGATGGGGCCGCGCTCGGTGACATGTACTTGAAAGAGGTAGC
TGCCGCCAGTGATGCTCAAGCGCAGGAAACGCAGAGAGCCAACAAAAAGG
CCGCTTTCCAGGCTCAGGTTAGATTGGGGATGCAGCCATCTGCAGCGGTT
GCACCCGCCCCACAGGTAGCTCAAACAGAGGTAGGGCTAGGTCAGGTAGA
AGAGTCGCCTTTTCCCTCTCGTGGCGGTGGAGGTGGAGGAAACCAAAGTT
TCTCTCCGCGTGGTAGGGGTGGTGGACGGTTCTTTGGTGGACGCGGTGGG
GGGCGCTTTAACAGGGGTAAGCGTTTCCAGGGTGGTAACAGGGGGTACGG
AGGTGAAGGCAGTCACCACTACGGGCCCCAAGAGCAAGCCTTCCCGTTTG
ATCAGCCCATGCATGGCGATTCCCGCACCATCTACGGGTATCCGCCGGCG
CACGAGGGCGAAAGGACCAAAAGGTGGGAAGAGGATGAAGCGGAGGTTAC
GAGTAAGGCACACTTGAAGGCTCTTTTTGAAATCTCTCCACGATTGAAGG
AATTTTTGCGTGCGCACGAAGCACTCACCGGCGAGGGTGCGGTAGAAACA
CCAGGTCACAGTGATATGCAATCAGTGATGAACCAACCCGCAGTAAGCAC
AGATTGCCAGCCGAAAGTATTGCCGCAGGTCAAGGTAGAGCCGTCATCGA
CTCAACCCGAGAAAGTCACACAGTGTGTCAAGACGGAGCCCCCGTCGACC
CACTCCACTGCAGTATCCGCAACCGTGAAACCAACCACAAACATCGCAAC
GCATGTAGTAGATCCTTCTGCTACCGTAGCACCTCCCGCAGCACCAGCCG
CAAACACAGAGGACAGTCCAGTGGACATGACCAAAAAGCAGATCAAAGAG
ATTCAAAGGCAGTATGCGACCTACAACACGGGTGTTTTCATGAAATTGCC
TCTGCTTCCGTTGGGTGAGGACGTTAACGAACTGGTCCAATTCGCGGACA
CTCTTAGTCATGTTGTGGAAGAGTGCAGGCTTGGTGTGGGCGACCACAGT
GACTCCCAGTGGGTAAGGGGGTGGGACCGACCGGTGGAAAAACATGTGAT
TAATGCAATTTCTTCCTCTCGTGCGGGATCCACGCAGGAAGTTCTCGCGC
TGAAGCGCAAGGTTAACACGGCCTTCATTCAGACGAGGGCACAGATGGAC
AAGGGGGTTCAAGGGCCGCAGGCTCTGGATTTCCTTATTCGAGTTTTGAG
CAAGGAGCTAAGTACGGTGTCCCCAAATGCTGTAGTATCAGAACTGCAGA
ATTTAGTAGTAGCTCCGGGAACGCCGTTCAAGGAATACATGAGTACGTTG
CGGTCGTTGGTTCAAAACGCGAGAAGTGTAGGGCACATTGCGCCGCAAGA
CAGTACGCTGCAGTTGGCAGTGCTGGAGTCAATGTGTGATCAGTACAGCT
TGCTCTCGGCAGATGTGTTCAAGGGAAGGGATGAGCGGGCCGTACCGTAC
GGTAGCATCGATGAGTTGATGGAAGCGTTGGAATTGATGCCGTGGAACAC
GGCTGCGGCTACCGCAGTGCGTAGAAAGACAGTCAGGAACAGTAGCTCGA
ACGGTGTCTGGAATGGTTCAATCGGAAAGAAAGAGAGTGGACAGCACTTC
AATTCTCAGTCCTCAGGGAAGAGTTTTGGGCGTGGTTACAGTGGTAGGAT
GATGACGGTTCATGATGAAATGGGAGATGAAAAACATGATTTCAAAAAGG
TGTATAACGTGGCTTTGAACCACACCGACAACACCGTGGGCGTACAACGC
GACCCTCCTTTCTATGTCCGTTTCACCTCGCTTGCGGAAAAAGACAAGCG
CCGACATGAGTATAAGGGCAAGTGTCTCAACTGCGCTAGCTCTGATCACT
TTGTCCGGGACTGTGACCAAGGCTTTCTCAACGACTCAGGCATGCTCAAT
CCCGATTTGGGGAACGGCACGCCCACTGAGGTGGCTGCTCGTTGGAAAAG
GTGGCTTGAGCGCCTGCGCCAATGGTTTAGAAATAGAAACAATTGAAGGT
GCGACGGTAAGTCAGAAACGGCAAACTTCCCGGTAGCATCTCGGCCGTTC
TTTTCCCACAGTGTTCTGGCAGGTTCTGGGACCCTTCGGTGTACGAGAGG
TCAGCAGGCCCCGTGCAGAGCCGAGAAAAAAATTATTTTGGCAGGTGCAG
GGAATATTCGGTGTACGGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig607:123649..127170-

>mRNA_P-littoralis_Contig607.50.1 ID=mRNA_P-littoralis_Contig607.50.1|Name=mRNA_P-littoralis_Contig607.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=195bp|location=Sequence derived from alignment at P-littoralis_Contig607:123649..127170- (Pylaiella littoralis U1_48)
TTTGGGGAGGCAGAGAATCTTGATGCGTCGGGAGAGGCTGAGGCCGCATC
CGTGGGCGCCCCCGCTAATGCTGGGGGTGACGAGTGTTCTGGCAGGTTCT
GGGACCCTTCGGTGTACGAGAGGTCAGCAGGCCCCGTGCAGAGCCGAGAA
AAAAATTATTTTGGCAGGTGCAGGGAATATTCGGTGTACGGGTGA
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