mRNA_P-littoralis_Contig116.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig116.12.1
Unique NamemRNA_P-littoralis_Contig116.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig116.12.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.750e-22
Identity = 46/108 (42.59%), Postives = 74/108 (68.52%), Query Frame = 1
Query:    4 YWNARGVDGV-DVAGNVVAPARWPHLSLLARLYAGVDTTSCQAERNFSALKQVLSDMRAGTLPRKIEQMLLLRLNRHLIPGFAKVERELAALKARHDANAKAAVAAQQ 324
            +WN RG D V    GNV +PA  P+L+ +ARL+ G++ +SCQAERNFSAL  ++  +R   L RK+E+M+L+RLNRHL+    +++  ++  +A+   +A+ +VA Q+
Sbjct:  151 FWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVRELDAAVSLARAKAAKSAQKSVACQE 258          
BLAST of mRNA_P-littoralis_Contig116.12.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.280e-21
Identity = 48/108 (44.44%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    4 YWNARGVDGVDVA-GNVVAPARWPHLSLLARLYAGVDTTSCQAERNFSALKQVLSDMRAGTLPRKIEQMLLLRLNRHLIPGFAKVERELAALKARHDANAKAAVAAQQ 324
            YWN RG D V    G V +PA  P+L+ +ARLY G++ TSCQAERNFSAL  ++  +R   LP K+E+M+ +RLNRHL+    +++  +   KA     A++++AAQ+
Sbjct:  533 YWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAKTKVAQSSMAAQE 640          
BLAST of mRNA_P-littoralis_Contig116.12.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.320e-21
Identity = 48/108 (44.44%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    4 YWNARGVDGVDVA-GNVVAPARWPHLSLLARLYAGVDTTSCQAERNFSALKQVLSDMRAGTLPRKIEQMLLLRLNRHLIPGFAKVERELAALKARHDANAKAAVAAQQ 324
            YWN RG D V    G V +PA  P+L+ +ARLY G++ TSCQAERNFSAL  ++  +R   LP K+E+M+ +RLNRHL+    +++  +   KA     A++++AAQ+
Sbjct:  728 YWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAKTKVAQSSMAAQE 835          
BLAST of mRNA_P-littoralis_Contig116.12.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.560e-21
Identity = 46/108 (42.59%), Postives = 74/108 (68.52%), Query Frame = 1
Query:    4 YWNARGVDGV-DVAGNVVAPARWPHLSLLARLYAGVDTTSCQAERNFSALKQVLSDMRAGTLPRKIEQMLLLRLNRHLIPGFAKVERELAALKARHDANAKAAVAAQQ 324
            +WN RG D V    GNV +PA  P+L+ +ARL+ G++ +SCQAERNFSAL  ++  +R   L RK+E+M+L+RLNRHL+    +++  ++  +A+   +A+ +VA Q+
Sbjct:  716 FWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVRELDAAVSLARAKAAKSAQKSVACQE 823          
BLAST of mRNA_P-littoralis_Contig116.12.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 6.030e-19
Identity = 43/94 (45.74%), Postives = 63/94 (67.02%), Query Frame = 1
Query:    4 YWNARGVDGV-DVAGNVVAPARWPHLSLLARLYAGVDTTSCQAERNFSALKQVLSDMRAGTLPRKIEQMLLLRLNRHLIPGFAKVERELAALKA 282
            +WN RG + V    G V APA  P+L+ +ARL+ G++ TSCQAERNFSAL  ++  +R   L RK+E+M+L+RLNRHL+     ++  +A  +A
Sbjct:  411 FWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLNRHLLAEVRALDAAVAQARA 504          
BLAST of mRNA_P-littoralis_Contig116.12.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.930e-18
Identity = 44/108 (40.74%), Postives = 69/108 (63.89%), Query Frame = 1
Query:    4 YWNARGVDGVDVA-GNVVAPARWPHLSLLARLYAGVDTTSCQAERNFSALKQVLSDMRAGTLPRKIEQMLLLRLNRHLIPGFAKVERELAALKARHDANAKAAVAAQQ 324
            +WN RG D V  A G V +PA  P+L+ +ARL+ G++ TSCQAERNFSAL  ++ ++R   LP ++E+M+L+RLNR ++      +  ++  +     NA  + AAQ+
Sbjct:  425 FWNRRGTDSVRAATGQVTSPADMPYLAFIARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERMMLIRLNRRMLDEVRAFDAAVSRAREMATKNAAKSAAAQE 532          
BLAST of mRNA_P-littoralis_Contig116.12.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 7.770e-18
Identity = 39/79 (49.37%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    4 YWNARGVDGVDVA-GNVVAPARWPHLSLLARLYAGVDTTSCQAERNFSALKQVLSDMRAGTLPRKIEQMLLLRLNRHLI 237
            +WN RG D V  A G V +PA  P+L+ +ARL+ G++ TSCQAERNFSAL  ++ D+    L  ++E+M+L+RLN+HL+
Sbjct:  529 FWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLNKHLL 607          
BLAST of mRNA_P-littoralis_Contig116.12.1 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.130e-17
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    4 YWNARGVDGVDVA-GNVVAPARWPHLSLLARLYAGVDTTSCQAERNFSALKQVLSDMRAGTLPRKIEQMLLLRLN 225
            +WN RG D V  A G V +PA  P+L+ +ARL+ G++ TSCQAERNFSAL  ++ D R   L  ++E+M+L+RLN
Sbjct:  146 FWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDFRCNMLSHRVERMMLVRLN 220          
BLAST of mRNA_P-littoralis_Contig116.12.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 5.150e-16
Identity = 43/103 (41.75%), Postives = 64/103 (62.14%), Query Frame = 1
Query:   16 RGVDGVD-VAGNVVAPARWPHLSLLARLYAGVDTTSCQAERNFSALKQVLSDMRAGTLPRKIEQMLLLRLNRHLIPGFAKVERELAALKARHDANAKAAVAAQ 321
            RG   V    G V +PA  P+L+ +ARLY G++ TSCQAERNFSA   ++  +R   LP K E+ + +RLNRHL+    +++  +A  KA     A++++AAQ
Sbjct:  326 RGTSSVSPTTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSARSHLIGQLRCKILPSKFERTMFIRLNRHLVAEVRELDAAVAQAKATATKTAQSSMAAQ 428          
BLAST of mRNA_P-littoralis_Contig116.12.1 vs. uniprot
Match: D7G031_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G031_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 8.460e-16
Identity = 45/88 (51.14%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    4 YWNARGVDGVDVA-GNVVAPARWPHLSLLARLYAGVDTTSCQAERNFSALK--------QVLSDMRAGTLPRKIEQMLLLRLNRHLIP 240
            YW   G D +D   G VV  ARWPHL+L+ARLYAG+D+TS Q ER+F             V S  R G  P +IEQMLL+RLNRH++P
Sbjct:  813 YWRLHGTDTLDSGTGEVVLAARWPHLALVARLYAGIDSTSRQGERHFGGGSGGGAELGAAVRSLQRGGMPPWRIEQMLLVRLNRHVVP 900          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig116.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KJT6_9PHAE3.750e-2242.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE1.280e-2144.44Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE1.320e-2144.44Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JRT6_9PHAE4.560e-2142.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE6.030e-1945.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE2.930e-1840.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE7.770e-1849.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7P7_9PHAE1.130e-1750.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KAS2_9PHAE5.150e-1641.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G031_ECTSI8.460e-1651.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig116contigP-littoralis_Contig116:61519..61847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size331
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789478.501402-CDS-P-littoralis_Contig116:61520..618471680789478.501402-CDS-P-littoralis_Contig116:61520..61847Pylaiella littoralis U1_48CDSP-littoralis_Contig116 61521..61847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig116.12.1prot_P-littoralis_Contig116.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig116 61521..61847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig116.12.1

>prot_P-littoralis_Contig116.12.1 ID=prot_P-littoralis_Contig116.12.1|Name=mRNA_P-littoralis_Contig116.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
KYWNARGVDGVDVAGNVVAPARWPHLSLLARLYAGVDTTSCQAERNFSAL
KQVLSDMRAGTLPRKIEQMLLLRLNRHLIPGFAKVERELAALKARHDANA
KAAVAAQQA
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mRNA from alignment at P-littoralis_Contig116:61519..61847-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig116.12.1 ID=mRNA_P-littoralis_Contig116.12.1|Name=mRNA_P-littoralis_Contig116.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=329bp|location=Sequence derived from alignment at P-littoralis_Contig116:61519..61847- (Pylaiella littoralis U1_48)
AAGTACTGGAATGCGCGGGGCGTGGATGGGGTAGACGTGGCAGGGAACGT TGTAGCGCCTGCCCGCTGGCCGCATCTGAGTTTACTAGCACGCTTATACG CAGGCGTCGATACCACCAGTTGTCAAGCGGAGAGGAACTTTTCCGCCCTC AAGCAGGTCCTTAGTGACATGCGTGCCGGTACCCTGCCCCGTAAGATCGA GCAGATGCTGTTGCTCAGGCTTAACAGGCACCTCATTCCAGGCTTTGCGA AAGTAGAGCGAGAGCTGGCCGCATTGAAGGCAAGGCACGATGCAAACGCA AAGGCGGCGGTTGCCGCCCAGCAAGCCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig116:61519..61847-

>mRNA_P-littoralis_Contig116.12.1 ID=mRNA_P-littoralis_Contig116.12.1|Name=mRNA_P-littoralis_Contig116.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig116:61519..61847- (Pylaiella littoralis U1_48)
AAGTACTGGAATGCGCGGGGCGTGGATGGGGTAGACGTGGCAGGGAACGT
TGTAGCGCCTGCCCGCTGGCCGCATCTGAGTTTACTAGCACGCTTATACG
CAGGCGTCGATACCACCAGTTGTCAAGCGGAGAGGAACTTTTCCGCCCTC
AAGCAGGTCCTTAGTGACATGCGTGCCGGTACCCTGCCCCGTAAGATCGA
GCAGATGCTGTTGCTCAGGCTTAACAGGCACCTCATTCCAGGCTTTGCGA
AAGTAGAGCGAGAGCTGGCCGCATTGAAGGCAAGGCACGATGCAAACGCA
AAGGCGGCGGTTGCCGCCCAGCAAGCC
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