mRNA_P-littoralis_Contig606.27.2 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig606.27.2 vs. uniprot
Match: D7FHY4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY4_ECTSI) HSP 1 Score: 306 bits (785), Expect = 1.000e-87 Identity = 148/194 (76.29%), Postives = 162/194 (83.51%), Query Frame = 2
Query: 2060 FPRGSPEELAQRVRDMEAELVRKLLAEEDAKSLLDIWVEKAREYILTQTVPPTDAECDFSWSRLRCEPKCSCGARLRFGDYTPGRACRLLHPWERSPDLCSEGGEAD---------------AWDPSDEPALGRAVAAAAGALGRLRRAYEARVAPPSDPECTFSLEARRCEPQPQCRLRLRWGDVTLTSGCRL 2596
FPRGSPE++AQRVRDMEAELVRKLLAEEDAKSLLDIWVE+ REY+LTQTVPPTDAECDF+WSRLRCEPKC+CGARLRFGDYTPGRACRLLHPWER+P+LC G + D WDPSDEPA+ R VAAAAGALG LR+AYE RVAPPSD EC+FS E RRCEPQP CRLR RWGD+T +S CRL
Sbjct: 458 FPRGSPEDMAQRVRDMEAELVRKLLAEEDAKSLLDIWVERTREYVLTQTVPPTDAECDFNWSRLRCEPKCTCGARLRFGDYTPGRACRLLHPWERNPELCGSGVDGDDXXXXXXXXXXXXXXXWDPSDEPAVRRVVAAAAGALGGLRQAYEERVAPPSDSECSFSFETRRCEPQPLCRLRFRWGDLTPSSACRL 651
BLAST of mRNA_P-littoralis_Contig606.27.2 vs. uniprot
Match: A0A6H5JIE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIE4_9PHAE) HSP 1 Score: 308 bits (789), Expect = 1.000e-86 Identity = 149/196 (76.02%), Postives = 162/196 (82.65%), Query Frame = 2
Query: 2057 EFPRGSPEELAQRVRDMEAELVRKLLAEEDAKSLLDIWVEKAREYILTQTVPPTDAECDFSWSRLRCEPKCSCGARLRFGDYTPGRACRLLHPWERSPDLCSEGGEAD----------------AWDPSDEPALGRAVAAAAGALGRLRRAYEARVAPPSDPECTFSLEARRCEPQPQCRLRLRWGDVTLTSGCRL 2596
+FPRGSPEE+AQRVRDMEAELVRKLLAEEDAKSLLDIWVE+ REY+LTQTVPPTDAECDF+WSRLRCEPKC+CGARLRFGDYTPGRACRLLHPWER+P+LC G D AWDPSDEPA+ R VAA AG LG LR+AYEARVAPPSD EC+FS E RRCEPQP CRLR RWGD+T +S CRL
Sbjct: 621 DFPRGSPEEMAQRVRDMEAELVRKLLAEEDAKSLLDIWVERTREYVLTQTVPPTDAECDFNWSRLRCEPKCTCGARLRFGDYTPGRACRLLHPWERNPELCGSGVNGDDGXXXXXXXXXXXXXXAWDPSDEPAVRRVVAAVAGVLGGLRQAYEARVAPPSDSECSFSFETRRCEPQPLCRLRFRWGDLTPSSACRL 816
BLAST of mRNA_P-littoralis_Contig606.27.2 vs. uniprot
Match: A0A6H5JPF6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPF6_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 2.590e-17 Identity = 57/158 (36.08%), Postives = 83/158 (52.53%), Query Frame = 2
Query: 2144 DAKSLLDIWVEKAREYILTQTVPPTDAECDFSWSRLRCEPKCSCGARLRFGDYTPGRACRLLHPWERSPDLCSEGGEADAWDPSDEPALGRAVAAAAGALGRLRRAYEAR-VAPPSDPECTFSL----EARR--CEPQPQCRLRLRWGDVTLTSGCRL 2596
D ++LL+ +++ T+ P TD ECD+SW R RC+P+CSC + RFGDY PGR+CRL ER C + ++ +L +AA G +GR + A V P +D +C FSL E ++ C P+ C ++GDV CRL
Sbjct: 91 DDEALLERIGRLVVQWVNTRLTPRTDEECDWSWGRWRCDPQCSCQYKYRFGDYAPGRSCRLRPEGERGLATCDP-------ERGNDVSLLEKLAAFVGKVGRSTWRFTAEHVVPQTDKDCRFSLAHSLEEKKLVCTPRRHCAFHYKFGDVHPGRSCRL 241
BLAST of mRNA_P-littoralis_Contig606.27.2 vs. uniprot
Match: A0A7S2UXV6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXV6_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 8.860e-16 Identity = 52/152 (34.21%), Postives = 75/152 (49.34%), Query Frame = 2
Query: 2168 WVEKAREYILT----QTVPPTDAECDFSWSRLRCEPKCSCGARLRFGDYTPGRACRLLHPWERSPDLCSEGGEADAWDPSDEPALGRAVAAAAGALGRLRRAYEARVAPPSDPECTF----SLEARR--CEPQPQCRLRLRWGDVTLTSGCR 2593
W EK + +LT + VP TD EC + W RC+P+C C + +FGDY+PGRACR L E P+ G+ D S GR V + + Y + P +D +C F S ++RR C P C + ++GD+T+ CR
Sbjct: 31 WAEKISDKVLTFVNEKVVPDTDPECTWHWGHWRCDPQCECKLKYKFGDYSPGRACRSLTFGELDPNCDPSAGD----DISLLEKFGRVVVVTWRRVALFSKTY---LLPRTDDQCQFAWKESWKSRRPTCSPHASCSFQPKFGDLTVGRACR 175
BLAST of mRNA_P-littoralis_Contig606.27.2 vs. uniprot
Match: A0A7S3NN76_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NN76_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.340e-15 Identity = 60/177 (33.90%), Postives = 90/177 (50.85%), Query Frame = 2
Query: 2081 ELAQRVRDMEAELVRKLL--AEEDAKSLLDIWVEKAREYILTQTVPPTDAECDFSWSRLRCEPKCSCGARLRFGDYTPGRACRLLHPWERSP----DLCSEGGEADAWDPSDEPALGRAVAAAAGALGRLRRAYEARVAPPSDPECTFSLEARRCEPQPQCRLRLRWGDVTLTSGCR 2593
EL +RV +E +L L ++ SLL+++ +++LT+ +P T EC + W++ C PKC C R+GD T RACRL+ E +P D+ E G + LG A+ + + + + + APPSD C FS + RCEPQP C R ++GD L CR
Sbjct: 93 ELRERVDVLEEQLRSANLPTVPDEEMSLLEMFAGATSDFVLTKLLPRTHPECRWHWAKAVCVPKCKCQLAYRWGDLTMSRACRLVD--EPNPNCDTDVRHERGSLEK--------LGDAIWIGSTTIWQNANEFLQQAAPPSDIRCDFSWQNLRCEPQPYCAFRYKFGDYHLGRACR 259
BLAST of mRNA_P-littoralis_Contig606.27.2 vs. uniprot
Match: A0A7S2S8F9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8F9_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.450e-12 Identity = 53/176 (30.11%), Postives = 82/176 (46.59%), Query Frame = 2
Query: 2144 DAKSLLDIWVEKAREYILTQTVPPTDAECDFSWSRLRCEPKCSCGARLRFGDYTPGRACRLLHPWERSPDLCSEGG------------EADAWDPSDEPALGRAVAA-----------AAGALG-----------RLRRAYEARVAPPSDPECTFSLEARRCEPQPQCRLRLRWGD 2569
D +SL++++ + R +++ P TD EC +SW RCEP+C C + + GDY+P R+CRL+ ++SP + G + DA +PS + A AA ALG RL +R AP +D EC F + +C P+ C + R+GD
Sbjct: 1 DERSLMEVFGDATRHWLIQHLAPRTDRECHWSWRLARCEPRCLCTFQPKLGDYSPNRSCRLV---QKSPAEITGGAGNDNSRDGNGVCDPDAPEPSGWQKVRHATAAMRRGSLRSLSSCVQALGTGASSLSRLAVRLGNGLRSR-APVTDEECHFVFDGLQCVPEEFCSFQYRFGD 172
BLAST of mRNA_P-littoralis_Contig606.27.2 vs. uniprot
Match: A0A7R9ZJ95_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZJ95_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 7.610e-9 Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 2
Query: 2135 AEEDAKSLLDIWVEKAREYILTQTVPPTDAECDFSWSRLRCEPKCSCGARLRFGDYTPGRACR 2323
AE+D ++LLD++ E A+E++ + +PPTD +C + W RCEP C+C + GDY GR+CR
Sbjct: 96 AEQDDRTLLDVFGEAAKEFLTQKLIPPTDTDCRWDWRFARCEPFCACAFAPQRGDYHLGRSCR 158
BLAST of mRNA_P-littoralis_Contig606.27.2 vs. uniprot
Match: A0A7S0CLR0_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CLR0_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 2.210e-6 Identity = 33/98 (33.67%), Postives = 51/98 (52.04%), Query Frame = 2
Query: 2060 FPRGSPEELAQRVRDMEAELVRKLLA---EEDAKSLLDIWVEKAREYILTQTVPPTDAECDFSWSRLRCEPKCSCGA-----RLRFGDYTPGRACRLL 2329
FP +P + + R+ +L+ +L E+D ++ LD + E ++ + +P TDAECDF W LRCEP CG FGD+ GR+C +
Sbjct: 114 FPSSAPRQSSPRLASRSNKLIYNVLNSLDEDDERTYLDTFGEVSKIIMTHHVIPETDAECDFDWRSLRCEPHDICGGGGCRFEYEFGDFHLGRSCWIF 211 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig606.27.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig606.27.2 >prot_P-littoralis_Contig606.27.2 ID=prot_P-littoralis_Contig606.27.2|Name=mRNA_P-littoralis_Contig606.27.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=847bp MTWQKVKQRGSSAAHLCHRRILLLAGAATLAGLLSSCQAEESININNNQRback to top mRNA from alignment at P-littoralis_Contig606:128373..132819+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig606.27.2 ID=mRNA_P-littoralis_Contig606.27.2|Name=mRNA_P-littoralis_Contig606.27.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4447bp|location=Sequence derived from alignment at P-littoralis_Contig606:128373..132819+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig606:128373..132819+ >mRNA_P-littoralis_Contig606.27.2 ID=mRNA_P-littoralis_Contig606.27.2|Name=mRNA_P-littoralis_Contig606.27.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2541bp|location=Sequence derived from alignment at P-littoralis_Contig606:128373..132819+ (Pylaiella littoralis U1_48)back to top |