prot_P-littoralis_Contig606.10.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig606.10.2
Unique Nameprot_P-littoralis_Contig606.10.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length253
Homology
BLAST of mRNA_P-littoralis_Contig606.10.2 vs. uniprot
Match: D7FGV7_ECTSI (Similar to PHD finger family protein, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV7_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.610e-12
Identity = 53/142 (37.32%), Postives = 75/142 (52.82%), Query Frame = 0
Query:   26 VCLLCDSNLPDVGRGIVTCGHVFCFACIIARCKTDTACPQCRDIVQDITKTLTEEEVKKEQDRKERHLVTIRHLVEMKKSPQEKSEAARLRRSKAARLKRKTNRLQCPMEGVFTKMFRVHEKKQKKSSTVALGQQVPAPHPQ 167
            +C +C   LP++ RG+++CGHVFCFACI    K  + CP CR  ++ ITKTL+  +  K +    + +V+ R    MKK P+++ + AR R S+A            P  G  TK  RV  K    S  +   QQ  APHPQ
Sbjct:  175 MCAICCDKLPNLERGVLSCGHVFCFACIHQWTKNSSICPGCRVQIKRITKTLSPADEAKAKGETRKPVVSQRG---MKKKPRKQLKRARHRDSRAKN----------PASGFVTKTVRVRPK----SLKMTPAQQRAAPHPQ 299          
BLAST of mRNA_P-littoralis_Contig606.10.2 vs. uniprot
Match: A0A6H5K2A7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A7_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.570e-9
Identity = 55/171 (32.16%), Postives = 77/171 (45.03%), Query Frame = 0
Query:   26 VCLLCDSNLPDVGRGIVTCGHVFCFACIIARCKTDTACPQCRDIVQDITKTLT--EEEVKKEQDRKERHLVTIRH---------------------------LVEMKKSPQEKSEAARLRRSKAARLKRKTNRLQCPMEGVFTKMFRVHEKKQKKSSTVALGQQVPAPHPQ 167
            +C +C   LPD+ RG+++CGHVFCFACI    K  + CP CR  ++ ITKTL+  +E   K + RK   L   R                            LV  ++  ++K       R +  R +R+ +R + P  G  TK  RV  K    S  +   QQ  APHPQ
Sbjct:   79 MCAICCDKLPDLERGVLSCGHVFCFACIHQWTKNSSICPGCRVQIKRITKTLSPADEAKSKGETRKPVSLAVTRQRGWRSLFLPVERAFRLCLFARFLGPLFLVVSQRGMKKKV------RKQLKRARRRDSRAKNPAAGFVTKTVRVRPK----SLKMTPAQQRAAPHPQ 239          
BLAST of mRNA_P-littoralis_Contig606.10.2 vs. uniprot
Match: A0A6H5L829_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L829_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.490e-8
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = 0
Query:   13 TSSLASAQEEPDEVCLLCDSNLPDVGRGIVTCGHVFCFACI---IARCKTDTACPQCRDIVQDITKTLTEEEVKKEQDRKERHLVTIRHLVEMKKSPQEKS 110
            T   A+   +  E+C++C   LPD+ RGI+ CGH FCF CI    +R      CP CR     I KTL+ ++V+KE+ R E   + ++ +   K S ++K+
Sbjct:   44 TKKAAADDAKKGELCIICQEALPDIERGIIACGHTFCFGCIHTWSSRSGDSVLCPSCRVPFNKIKKTLSPKDVEKEKLRNEVDKIFVKDIRVRKMSKKKKA 144          
BLAST of mRNA_P-littoralis_Contig606.10.2 vs. uniprot
Match: D7FGW0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW0_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 2.350e-7
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 0
Query:   25 EVCLLCDSNLPDVGRGIVTCGHVFCFACII--ARCKTDTA-CPQCRDIVQDITKTLTEEEVKKEQDRKER 91
            E+C++C   LPD+ RGI+ CGH FCF CI   A  + D+A CP CR     I KTL+ ++++KE+ R ER
Sbjct:   56 ELCIICLEALPDIERGIIACGHTFCFGCIHDWASNRGDSALCPSCRFPFNKIKKTLSPKDIEKEKLRNER 125          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig606.10.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FGV7_ECTSI1.610e-1237.32Similar to PHD finger family protein, partial n=1 ... [more]
A0A6H5K2A7_9PHAE3.570e-932.16RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L829_9PHAE1.490e-835.64RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FGW0_ECTSI2.350e-747.14RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 9..77
e-value: 2.8E-8
score: 35.0
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 44..53
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 27..67
score: 11.382803
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 18..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig606contigP-littoralis_Contig606:66626..74701 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig606.10.2mRNA_P-littoralis_Contig606.10.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig606 57725..74918 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig606.10.2 ID=prot_P-littoralis_Contig606.10.2|Name=mRNA_P-littoralis_Contig606.10.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=253bp
MSSGASGNGAQATSSLASAQEEPDEVCLLCDSNLPDVGRGIVTCGHVFCF
ACIIARCKTDTACPQCRDIVQDITKTLTEEEVKKEQDRKERHLVTIRHLV
EMKKSPQEKSEAARLRRSKAARLKRKTNRLQCPMEGVFTKMFRVHEKKQK
KSSTVALGQQVPAPHPQRMCMNSCFDLLKVEHAARSMSTRRNRAPTRYCK
AIKTVAQPSFCDSGIVPASSAAQRDTHNASSIINAEERGSQSTVVWKILG
FR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR001841Znf_RING