mRNA_P-littoralis_Contig604.19.7 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig604.19.7
Unique NamemRNA_P-littoralis_Contig604.19.7
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig604.19.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig604contigP-littoralis_Contig604:95903..102873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3852
Hectar predicted targeting categoryother localisation
Exons5
Cds size786
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig604.19.7prot_P-littoralis_Contig604.19.7Pylaiella littoralis U1_48polypeptideP-littoralis_Contig604 98723..102536 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791260.2145994-UTR-P-littoralis_Contig604:95902..964811680791260.2145994-UTR-P-littoralis_Contig604:95902..96481Pylaiella littoralis U1_48UTRP-littoralis_Contig604 95903..96481 -
1680791260.2246587-UTR-P-littoralis_Contig604:96572..987221680791260.2246587-UTR-P-littoralis_Contig604:96572..98722Pylaiella littoralis U1_48UTRP-littoralis_Contig604 96573..98722 -
1680791260.2793503-UTR-P-littoralis_Contig604:102536..1028731680791260.2793503-UTR-P-littoralis_Contig604:102536..102873Pylaiella littoralis U1_48UTRP-littoralis_Contig604 102537..102873 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791260.2341263-CDS-P-littoralis_Contig604:98722..990871680791260.2341263-CDS-P-littoralis_Contig604:98722..99087Pylaiella littoralis U1_48CDSP-littoralis_Contig604 98723..99087 -
1680791260.24388-CDS-P-littoralis_Contig604:99888..1001301680791260.24388-CDS-P-littoralis_Contig604:99888..100130Pylaiella littoralis U1_48CDSP-littoralis_Contig604 99889..100130 -
1680791260.2613866-CDS-P-littoralis_Contig604:101268..1013981680791260.2613866-CDS-P-littoralis_Contig604:101268..101398Pylaiella littoralis U1_48CDSP-littoralis_Contig604 101269..101398 -
1680791260.270356-CDS-P-littoralis_Contig604:102487..1025361680791260.270356-CDS-P-littoralis_Contig604:102487..102536Pylaiella littoralis U1_48CDSP-littoralis_Contig604 102488..102536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig604.19.7

>prot_P-littoralis_Contig604.19.7 ID=prot_P-littoralis_Contig604.19.7|Name=mRNA_P-littoralis_Contig604.19.7|organism=Pylaiella littoralis U1_48|type=polypeptide|length=262bp
MNWWGRSNRRISYYEDERTDDNLTHVSGSSSRGSMGAVALLGALGVSTDT
AQVIVHLVSKGAGFVKVKAVRAMAKTGDRLKRLLFGQEDPPPTVNMTIAI
TGIAEENLYKAELVFDDNSGTLVQIHFLHKHIQKLITGALGTTVRDLGPF
TRGKVPPFCLLISLENVFSIVRQHWVYEMFSEYSAGLDSVTIVKLRSRYN
ARTKVRLLWDNRGPSDRSEAQVLFEYEWKDCKYRNSRVKDLEKLTDLSVV
IRNYGRVLIFH*
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mRNA from alignment at P-littoralis_Contig604:95903..102873-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig604.19.7 ID=mRNA_P-littoralis_Contig604.19.7|Name=mRNA_P-littoralis_Contig604.19.7|organism=Pylaiella littoralis U1_48|type=mRNA|length=6971bp|location=Sequence derived from alignment at P-littoralis_Contig604:95903..102873- (Pylaiella littoralis U1_48)
CTGTACCACGTGCGGAAATCAACAGGCTATTTTCGGGGGAGGGGTCTCGT
GACACGTTGTGGCGATTTTCTCCCTGTCCAAGGTGTCCTCCAGGATGAAT
TCGTAAACAACACCTCGCACAAGGGGGGCTCTGTTGGCCACCTTTTTTCT
TTTCAATCACCGTCTTTCGAGCGCAAAATGTAGTAGACTTCGCAAACCTT
CTGTAAAAATCTTAACACTGGAAACGGTCCCTCCCTCTGCCTCGTCACTC
CACACCGACACGACGCTCGTTCCTAGGAACGACGACCACGCACACCACGC
GAATTTGAAAGTCAAACTACTGCAGCATTTCGACGACATGAACTGGTGGG
GAAGGTCAAATCGGAGGATCAGTTACTACGAGGACGGTGAGCCAGCTCTC
TCATCCCCCAGTCCGAGGCGTTCAGGAGCAAAAATTCAATCGCATGGTGT
TCCACAAACAATGTGCCTATGGTACAAGTAGTCCAAATGAATAAACTTGT
TCCACGGCAAAAAACTAGCGCACCAAGCTCACGACGAAAATGAATAAAAA
CGAGTTCCCCTTCACATACGCGGGCCACTATCCGGCATTCTGTGCGTTGA
TAAGAGAGAAAGCCTTCGACGCCCGTAGCGTCAAACGAAGCTTGCTCGTC
CTGGCAGGGCAGTCTTGGGCGACCTAAAAATAGAAGTCGAAGAAGAAACT
TCTAAGGATCCGGCCCAAAACCGGGGGACATCTGGTTCACTTGTCGGAGC
GCAACAGCTGAGGACGTGTACGTCGACAAAAACAATTGAAAGATGCAAGA
GGCCGTTTCGCCAATTTTTGCGCGAAAAACAAGCTGTTACCTCTCTTTCC
CGGCCCCCTCGGGATCCCACCCACCATAAACCTTGGGTACGGTCTACCGA
AAACGTAGGCCTAGAGTGCTCGAGGATAGCTGGCATTGGAAAGGCATCGC
GTCTTTCCACACTATTCCGACATGACATGTGAAAGTGTCGACCAGAGGAA
GGTGCGGAAAAGTGTGCAAGACCAATTCAAATTCTATCAAACCGGGGTGA
AGAACTTATGTGTTCTCTGTTACGATAAACTGCTCCAACTTTTTTTCAGT
CGTGAAATTGATCGTTGGAAGTTCGTTGTTCTTGTTTTTCCCGCCCCAAA
CTTTGCTGCATGCAGTGACAGGACACACCTAAAATTATTGAGTAAAACAT
GATATCGGCCAACCTACCGCATGCTGTGCCTGATGGGTTTTTGATCATTC
TTTGCGAAGTTCGTGCGGGCCCCGTTTCCTTCCCGGACATTTGTGTTCTT
CCCCAATCAATCCTGACAGAGGAACCTTCATCAGGCAACGACGGTAGTAC
AAAAAAGCAGTGCAATGATAACGCCACCACCGCATCCTGGCGCAAAAGTT
CAGATGCATTTATTTGACCCGTATTCTGTCGTCCATGGTTTTGACAACGA
ATTGTTGCTTCATCGGAAACGAAAGAACGCACAGACGACAACCTCACCCA
CGTCTCGGGTTCGTCGTCACGAGGTTCAATGGGGGCCGTGGCCCTCCTGG
GGGCCTTAGGAGTGTCAACCGATACCGCGCAAGTCATTGTTCACCTGGTA
TCCAAGTGAGTTTCGTGCGTGCATGCGTGCGTGCATGCGTGCGTGCATGC
GTGCGTGCATGCGTGCGTGCATGCATGCGTATCGGTATATTTTGTAGATA
ACATTGACGTATCATACACTCATGTTTGTGCCTATACCCATGAATCCGCT
CATGCGCGCGCATAGGCACACATGCACACACACGCATGTGTCACACACTC
ATTAGCACACGCATTAGTAGTTGTTTGCTTTATTATATGAGTGTGCATGA
GCCCGCCTCATGAGAGCGCGTGGGTCGACTTTTTATGGGTACGCGTGAGT
GAGCTCATGGATGAGCCATAGTCATAAGCACAAATGCACACGCATCGTTA
CTCAAAAGTGTTAAATGACGTCAAAAACAAAATAAAAGACGGCAACCTGC
TTCAATCTGACTCCGATTTCTACAGTTGGGTTTCTCGTGGGTGCTCAGGG
GCGAATGTGATAAATGGCGATTGCTTTCATTGCACTCATGTGCACGCATG
AGTATACTCCGTCATGATCACCCGTGAAAATTATTCGTGGGAAAATGTTC
GCGACACACCTCACTTACTGTACGAGCGCGCATGAGCTTGCGCTAGTCAT
GCGTACCTATCCATAAGCGAGTATGAGCGCTCATCGTAGTTCGGGTCATG
CGCGCCCACGAGCACGCATGGGTACCCCCGAAAATGCTCACGAAGTAAGC
CCGAAAATGTCACCAGCCCCAGACGGAGGACAAAAAAACAGTTCCTCAAA
ATCACTGATTCGAACAGCGAGAGGCTTCTTGTGGATCGCAAGACTACGGA
GACAGACCCTATCGACTTAACTTTGAAGATCCGCAATAAAAAAACTGAAG
GAACCTTTCCTGGCACGCCGGTCGATAAATCGAGAAGCCTACGCAAAACA
TGTAAATTGCGCACCTTTGATAAGGGTGTTTCGGCAAAGGGTTTTTCCGT
AAAGCGGGCCGCTCGAACGGAGTATGTTCACAAAAAAGAAGCGTGTCACC
ATCCCGTGACGGGAAACACCTCCGACTTGATCTCATCGCAAAGAAAGAGG
AGCCATACCTGTCGAAAACTGCGACTCTGAATGGAAACACTTCGTTCCTC
GTGATCGGGCTGAGCTGGCACCCACGCTGCTGCTGTTTTTCAGGGGGGCT
GGGTTCGTCAAGGTGAAGGCGGTCCGTGCTATGGCCAAAACCGGAGATCG
GCTTAAGCGGCTCCTGTTCGGCCAGGAAGATCCGCCCCCGACAGTCAATA
TGACGATCGCCATCACCGGCATTGCCGAGGAAAACCTGTACAAGGCAGAG
CTCGTCTTCGACGACAACTCAGGCACCCTTGTCCAAATCCACTTTCTGCA
TAAGCACATCCAGAAACTCATCACTGGCGCGCTAGGTGGGTAACCTGTGC
AGGGATGGTTGTGTGTCATGAGGGGATCATCAGATGGATAGGCAGCTGGT
GAGCGCCTTTGTTTTGCCATTGCCCCTGAACATCACCAGTTCGGAACTAC
TGCCATTGTTAGCGGTGAGGAGTCCGCAGTGCTGCTTGCACCATGGCCTG
CGGCGATATGCCGAAGTGTGCACTGATCAGAAAGGACAGTAAAAATATTG
CTTTTTTCCTGACTTACTCCAAGGATAGGTTTGAGTGATGGAGAGGAGCA
AACACCAGGGGCTGAATCTCGCCTGTCTGTGTATTGCAGCAGTAGTTTAA
ACAAGAACACAACAACACAAAGGACCACAAAAAAAAAAAGTACCCACGCC
CCCAGGTTGAGTCTACTCGCCTCTGTAGTACTAGATGTATGGCAGTCAAC
GTGTCGACGCTACTGTATCTTCTAGATTCGAGTTCTGTTGATAAGCTTCT
GTTCTAAGTACATGCCTCTTCGATTTTACTTAATCTGTGCGGCTCACGAC
AACAGCGTAACGAACAGAGAACCTATCTACTCCATCCATCAGCTGCGCTT
TATTTTCGCGGCGACGCAAACATACTCGTACAGCGGTTGACAAATATCTC
CCACCACTGCGATAAGACGATCAAGAAGTCAATCATGACGCATTTTCTGC
ACTGTTGCTTGCTTATCGCCTCTTCGTTTGATGCGGAGATGAAACACAAA
TCGGAGGCAAAAAGAACAATGCTTTGGAGAGTTTATCTGTATGCGTCGCT
CTGGTTTGTCCCCTCACTTCTTTATTTTGTCGTCAGGTACCACCGTAAGG
GATCTAGGTCCTTTCACGAGGGGAAAGGTTCCTCCGTTTTGCCTACTCAT
CAGCTTGGAGAACGTGTTTTCGATTGTTCGACAGCACTGGGTTTACGAGA
TGTTCTCTGAGTACTCGGCAGGGCTCGACAGCGTCACCATCGTCAAGCTC
AGGTCCAGGTATAATGCAAGGACCAAGGTGCGGTTGCTCTGGGACAACAG
GGGACCTTCGGACCGAAGCGAGGCGCAGGTGTTGTTTGAATACGAATGGA
AGGATTGCAAGTATCGCAACAGCAGGGTAAAAGATCTGGAAAAGCTCACG
GATTTATCCGTCGTGATTCGCAACTATGGTCGAGTGCTAATTTTCCATTA
ACGCGGGTGCATCCACCAGTCAGTCAGTCTGATTGGTTGGCGAACCTTCC
AGACTCTCACGCGTGGCTGCAGCAGTTCGTGCGGACAATTTGTTATTTTT
TCCCTCGTCAGTTTCATTTCTTTTCTGAGAGAATGTCTCGCCTCTTTGCA
AGCGTCTCGTAGCTCCATCCGTATAGAAAATGGCTGTTTCTTTTGGTTCA
TTTTTTATATTATAGGTCTGCCGTAAATGTCTATAGCTGTATTGGTCTGG
TCGATCAAAGAGATGCCGGAACGGAGCTCGCTTCTTCGGAGCATTTTTTT
TTATTGTTTCAGAGTGTGGGAAAGGGCTGTTCCGCGTTGAGACTGGTATA
TGGTATGCTGAAGATATTACGGATTTCCTATCCTTCTTTCCTTGCCCGTG
TTTGCCCTGGTTGATGTCGGAAACTATTGTCCGCCGGAGTGGTTGGCGAG
TACGCGATGTTTCTGGCGATGGCCGCGCTGCCGTTGTTGGGTATACGCCT
CCCGAGCGCCCCCTTCCCCAGCCCAACACGAAGGTACACGAAAAACATGG
AGCTTTGTGGCGGTGACGGTTGCCTGGCCTGTGAATCCCAACGTGAAACC
TTCAGGCATGCATGTAGTAGGAGGAAAACCTTGAGGCATACATAATAGGA
GGGCGGGGGATAGATGGTCTTTGTTGTGTTTTTTTCCCTGTTTTGGATGC
AGTAAACGTGTTTCTTTCTTGATTTCAAGGCCTCCATCGCATATTACCAG
GCATTCGGGGGGCTGGGCTGGCTGGGCGAACTCGACGATGAACATACCCC
TACGGTACGGGCACAGACAGAAAGGAAGGATAGACCCAGCGATTTTATTT
GGGCATAACTAGTTCATGGTATTCTGTGTTTTTTTACTCGGACGTCAAGT
AGGGGGATTGGATTGACACTTCATATTCTCTGTCGTCCGATTTGATGTCT
GCCTCTCTTGTTAATCGGTCGGTATTTGTTTTCCGCGTTTGTTTGTTTTG
TGTGCGTGTGGCTTTCCGGGTCCTCGTCGTTGATTCCCCCCAAGTGGTAC
TGCATAGATTTTGGGCTAGTATAAGTTGGCCATCCCGTGACCACGGAACA
CAGGCCTCTGTCTCGCCTTTCTATCTACCCCCTTTCATCTTGGCCAGCCA
GGACGGCTTGTGGAATACAAAAATAAATATGTTCGCACATGGAAAACGAG
ATGCTGTTCATCTAGTTTTCCCGGGGAACGAACCCCCGGGAAATGATATC
AGCACAAGCCAGTGTACATAGATTATTTGGCATACGATGTGGTTTCGACG
CGCGGTTTCTACACTAAATCCGCTGCACGTTTTTATAGGATTTACATCAA
GCGCTTTTCTTAGGTTTTCCTCTAGAATTTCGGACCCCCTTGCAGTTTTT
CATGCTCTTGAGAACCGGGCAAAAAGCAGGAATGTTAGCCCGGTACCGGT
AGCTATGGGTTCCAACTTTGCCGGGTAGGTTCTGTGGGGAAATTTCTGAG
ATTGGTGCCCATTGTATTTTTTACTTTATACTTGGACCCGACGCTACGTA
GTTATATCGAGCTTCATTGCATTTTTTTTGGCGTTTCGATTGTTGAAGGT
GCGGGACAGGCAGCAGAGTATTGGTGTGCCCGCGTTGACGGCCGTTCGAG
AATGCAGGTGTTTTTTCTGGTTTTTTTTCCGGGCTTGTCTGCCTTTATTT
TTCTCTAGTATTACGGAGGGGGGGAGGAAGGGGGCAGGTGGATAAACGCT
TCGGTCAGTGGATATTACTTCAAAGCACAACGTCACCTTACAGCAGTACC
CCCTTCTGTTTCTGTCAAGTGTCTGGAGTTGTGGAAGGGCGGTGAGCGAG
AAGGTTAACCCTGCCACCCTGCCAGATACAGTAGCATATCGCAACAAACA
TCCATCCCTCATGGGGGTGTGTCAGTACTTTGATTAAGCAGCCGAAGAAA
AACAAAAACCCAAGAAATCAGGTCAGGAAATCCCGGGGACGTGCGGTTTT
TATCCACGATATGTTGAGGTGTTATTATCGGCAAGTTCCGCCAAACAGAC
TGATTTGGGGGGAATAACCAGTAGGTTGCGGTCCCGGTTGGAACTTAGTG
AAATCCCTAAAAAATACGCCGTGACACCGCACACTCAAGGAAATTTATTT
TCTCATCTTTGTAGCAAGAAGCACGTCGCCTCCTCCCAGGTACGCTAACA
GTCCCGAAACTACGGCGAACGTTGGGAGTTGTTGCCCTTCCGACCTCCTG
ACCCTCAACTTTTGGTCTACTCAATCTAGCAGGCACCCACGCCCCGAGGT
CGGCGTCTGTGTCCGTTCAATACGACTCAGTTGACGAGTCCATGCGGTCA
CCTCTGTAAGGGTGTGCAGTACAGTATTCCAAGGGAAGTCGCGGTCGGCC
GTGCCTTCACGAAGAGTGTGAGAAGTCCTACACACTTGAGAAGTTCGACC
GATGTAAATGTAGAAAAACCTCGCCGAACCACAGAAAGTCCAGGTTTTGC
AAGCGCACAGGCCAGTCACTTTCGAGGAGTGATCTACGGCCATCGGGGGA
GACTCTTAAAGCCAAAATTCGTCGGGGAAGTCCACAGCCCTAGATTCTAC
TTTCGAATACTACTCCTGTTTAGTGTTTCGTGCTGATATGACCAAGAGGA
TGATTCCACATGGAGCACCGGTCGCCCCGGTGGACTGGTGGTCCCCTCGT
TAACCACTAGATGCAGAGGAATGGGGGTTCGATTCCTGGTGAATGTGTTC
CTTTGCTACTTTGAAAGCGGCTATGCTGTTAGTAAAAGCAGATTCGGCTT
CGCCGACGAGGGTAGGGACCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig604:95903..102873-

>mRNA_P-littoralis_Contig604.19.7 ID=mRNA_P-littoralis_Contig604.19.7|Name=mRNA_P-littoralis_Contig604.19.7|organism=Pylaiella littoralis U1_48|type=CDS|length=786bp|location=Sequence derived from alignment at P-littoralis_Contig604:95903..102873- (Pylaiella littoralis U1_48)
ATGAACTGGTGGGGAAGGTCAAATCGGAGGATCAGTTACTACGAGGACGA
ACGCACAGACGACAACCTCACCCACGTCTCGGGTTCGTCGTCACGAGGTT
CAATGGGGGCCGTGGCCCTCCTGGGGGCCTTAGGAGTGTCAACCGATACC
GCGCAAGTCATTGTTCACCTGGTATCCAAGGGGGCTGGGTTCGTCAAGGT
GAAGGCGGTCCGTGCTATGGCCAAAACCGGAGATCGGCTTAAGCGGCTCC
TGTTCGGCCAGGAAGATCCGCCCCCGACAGTCAATATGACGATCGCCATC
ACCGGCATTGCCGAGGAAAACCTGTACAAGGCAGAGCTCGTCTTCGACGA
CAACTCAGGCACCCTTGTCCAAATCCACTTTCTGCATAAGCACATCCAGA
AACTCATCACTGGCGCGCTAGGTACCACCGTAAGGGATCTAGGTCCTTTC
ACGAGGGGAAAGGTTCCTCCGTTTTGCCTACTCATCAGCTTGGAGAACGT
GTTTTCGATTGTTCGACAGCACTGGGTTTACGAGATGTTCTCTGAGTACT
CGGCAGGGCTCGACAGCGTCACCATCGTCAAGCTCAGGTCCAGGTATAAT
GCAAGGACCAAGGTGCGGTTGCTCTGGGACAACAGGGGACCTTCGGACCG
AAGCGAGGCGCAGGTGTTGTTTGAATACGAATGGAAGGATTGCAAGTATC
GCAACAGCAGGGTAAAAGATCTGGAAAAGCTCACGGATTTATCCGTCGTG
ATTCGCAACTATGGTCGAGTGCTAATTTTCCATTAA
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