mRNA_P-littoralis_Contig603.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig603.14.1
Unique NamemRNA_P-littoralis_Contig603.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig603.14.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 4.910e-45
Identity = 81/141 (57.45%), Postives = 96/141 (68.09%), Query Frame = 1
Query:    4 HLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMCGGREDAVAVILVTSCTVATNDVRT---------------SAPTFAQEYL-ASGAQQPDWVVTSPPYKGAINFVKGAMELARYGVALKLPLSFMEPCGDRGVWLQRNP 378
            H+KRR LDRYCTSP AVEAL+  V +EG VLDMCGG  DA+A  L  +C V TND+ T               S  +FA ++L A   Q+PDWV+TSPPYKGA+ +VK A+ LA  GVALKLPLSF+EPC DRG WLQ NP
Sbjct:   74 HIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANP 214          
BLAST of mRNA_P-littoralis_Contig603.14.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 9.710e-44
Identity = 79/135 (58.52%), Postives = 96/135 (71.11%), Query Frame = 1
Query:    7 LKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMCGGREDAVAVILVTSCTVATNDVR----------TSAPTFAQEYLASG-AQQPDWVVTSPPYKGAINFVKGAMELARYGVALKLPLSFMEPCGDRGVWLQRNP 378
            LKRR +DRYCTSPA +EAL+  V I G VLDMCGG +DAVA+ L  +C V TNDV            S+ +F  ++LA+   QQPDW+VTSPPYKGA+ FVK A+ +A+ GVALKLPLSF+EPC DR  WLQ NP
Sbjct:   63 LKRRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANP 197          
BLAST of mRNA_P-littoralis_Contig603.14.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 2.360e-39
Identity = 79/143 (55.24%), Postives = 95/143 (66.43%), Query Frame = 1
Query:    1 MHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMCGGREDAVAVILVTSCTVATNDVRT----------------SAPTFAQEYLASG-AQQPDWVVTSPPYKGAINFVKGAMELARYGVALKLPLSFMEPCGDRGVWLQRNP 378
            +H+KRRHLDRYCTS  AVEAL+  V + G VLDMCGG +DAVA  L  +C V TNDV +                S  TFA E+LA G  QQP+ VV SPPYKGA+ FVK A+ +A++GVALK  LSF+EPC DR  WL+ NP
Sbjct:  109 VHVKRRHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANP 251          
BLAST of mRNA_P-littoralis_Contig603.14.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 2.730e-39
Identity = 81/136 (59.56%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    4 HLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMCGGREDAVAVILVTSCTVATNDV--RTSAPTFAQEYL---------ASGAQQPDWVVTSPPYKGAINFVKGAMELARYGVALKLPLSFMEPCGDRGVWLQRNP 378
            H KRR LDRYCT P AVE L   V I G VLDMCGG EDAVA    ++C V TNDV  R SA T     L         A+  +QPDWVVTSPPYKGA+ FVK A+ +A  GVALKLPLSF+EPC DRG WL  NP
Sbjct:  120 HDKRRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNP 255          
BLAST of mRNA_P-littoralis_Contig603.14.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 3.260e-36
Identity = 68/136 (50.00%), Postives = 88/136 (64.71%), Query Frame = 1
Query:    4 HLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMCGGREDAVAVILVTSCTVATNDVRTSAP----------TFAQEYLAS-GAQQPDWVVTSPPYKGAINFVKGAMELARYGVALKLPLSFMEPCGDRGVWLQRNP 378
            HL+RR LDRYCTSP A++A +  V I G VLDMCGG  DAVA  L ++C + TNDV +  P          +F +++LA+   ++P+WV TSPPY  A+ FVK AM LA  GV  K+ + F+EPC D G WLQ NP
Sbjct:   21 HLRRRWLDRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNP 156          
BLAST of mRNA_P-littoralis_Contig603.14.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 5.480e-29
Identity = 68/140 (48.57%), Postives = 81/140 (57.86%), Query Frame = 1
Query:    4 HLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMCGGREDAVAVILVTSCTVATNDVRTSAP----------TFAQEYLA-SGAQQPDWVVTSPPYKGAINFVKGAMELARYGVALKLPLSFMEPCGDRGVWLQRNPHLSA 390
            HLKRR LDRYCTSP AVEAL+  V I G +LD+CGG  DAVA  L  +C V TNDV +  P          +F  ++ A S  ++PDWVVTSP YK A+ FVK AM LA  GV +  P           V  +R PHL A
Sbjct:   87 HLKRRWLDRYCTSPEAVEALLGAVSITGCILDVCGGPTDAVATRLGPTCEVLTNDVSSGRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGVTVPAPTGV--------VGFKRIPHLCA 218          
BLAST of mRNA_P-littoralis_Contig603.14.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 9.560e-26
Identity = 60/111 (54.05%), Postives = 72/111 (64.86%), Query Frame = 1
Query:   13 RRHLDRYCTSPAAVEALVAEVRIEGVVLDMCGGREDAVAVILVTSCTVATNDVRTSAPTFAQEYLASG-AQQPDWVVTSPPYKGAINFVKGAMELARYGVALKLPLSFMEP 342
            RR LDRYCTSPAAV+AL A V I G VLDMCGG EDAVA     +CT    ++  S   F  E++     ++PDWVVTSPPYKG++ FV  A+ +A  GVALKL L    P
Sbjct:   42 RRRLDRYCTSPAAVDALRAAVAITGCVLDMCGGPEDAVAQGFGGTCT----NLDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNP 148          
BLAST of mRNA_P-littoralis_Contig603.14.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.160e-25
Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  100 MCGGREDAVAVILVTSCTVATNDVRTSAPT----------FAQEYLAS-GAQQPDWVVTSPPYKGAINFVKGAMELARYGVALKLPLSFMEPCGDRGVWLQRNP 378
            MCGG  DAVA  L ++C + TNDV +  P           F +++LA+   ++P+WVVTSPPY  A+ FVK AM LA  GVA K+P+ F+EPC DRG WLQ NP
Sbjct:    1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNP 104          
BLAST of mRNA_P-littoralis_Contig603.14.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 8.500e-25
Identity = 52/93 (55.91%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  100 MCGGREDAVAVILVTSCTVATNDVRTSAPTFAQEYLASGAQQPDWVVTSPPYKGAINFVKGAMELARYGVALKLPLSFMEPCGDRGVWLQRNP 378
            MCGG EDAVA+    +C V TNDV       ++   A   +QPDWVVTSPPYKGA+ FVK  + +A  GVAL+LPLSF +PC DRG WL  NP
Sbjct:    1 MCGGPEDAVALGFGGTCEVLTNDVS------SRLSPAHPGKQPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNP 87          
BLAST of mRNA_P-littoralis_Contig603.14.1 vs. uniprot
Match: A0A6H5JT40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT40_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 6.850e-24
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  178 SAPTFAQEYLAS-GAQQPDWVVTSPPYKGAINFVKGAMELARYGVALKLPLSFMEPCGDRGVWLQRNP 378
            S+ +FA +YLA+   QQPDWVV+SPPY+GA+ FVK A+ +A+ GVALKLPLSF+EPC DR VWLQ NP
Sbjct:   20 SSASFADDYLAAHNGQQPDWVVSSPPYEGALAFVKAALTVAKEGVALKLPLSFLEPCADRAVWLQANP 87          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig603.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FJU4_ECTSI4.910e-4557.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K049_9PHAE9.710e-4458.52Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHQ4_9PHAE2.360e-3955.24Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK3_9PHAE2.730e-3959.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0Y0_ECTSI3.260e-3650.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD58_9PHAE5.480e-2948.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1N5_9PHAE9.560e-2654.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSI1_ECTSI1.160e-2550.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K929_9PHAE8.500e-2555.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT40_9PHAE6.850e-2466.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig603contigP-littoralis_Contig603:59480..60187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog102129.Lepto7375DRAFT_1733
PFAMsAcyltransferase,MMPL,Methyltransf_21,Methyltransf_25,Methyltransf_31
Model size399
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.17e-06
EggNOG OGsCOG2813@1|root,COG2813@2|Bacteria,1GAGN@1117|Cyanobacteria,1HHWT@1150|Oscillatoriales
DescriptionSpecifically methylates the guanine in position
Cds size399
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791257.7484515-CDS-P-littoralis_Contig603:59479..596581680791257.7484515-CDS-P-littoralis_Contig603:59479..59658Pylaiella littoralis U1_48CDSP-littoralis_Contig603 59480..59658 +
1680791257.7646668-CDS-P-littoralis_Contig603:59967..601871680791257.7646668-CDS-P-littoralis_Contig603:59967..60187Pylaiella littoralis U1_48CDSP-littoralis_Contig603 59968..60187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig603.14.1prot_P-littoralis_Contig603.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig603 59480..60187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig603.14.1

>prot_P-littoralis_Contig603.14.1 ID=prot_P-littoralis_Contig603.14.1|Name=mRNA_P-littoralis_Contig603.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
MHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMCGGREDAVAVILVTSC
TVATNDVRTSAPTFAQEYLASGAQQPDWVVTSPPYKGAINFVKGAMELAR
YGVALKLPLSFMEPCGDRGVWLQRNPHLSAYS*
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mRNA from alignment at P-littoralis_Contig603:59480..60187+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig603.14.1 ID=mRNA_P-littoralis_Contig603.14.1|Name=mRNA_P-littoralis_Contig603.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=708bp|location=Sequence derived from alignment at P-littoralis_Contig603:59480..60187+ (Pylaiella littoralis U1_48)
ATGCACTTGAAACGTCGGCATCTTGATCGATACTGCACGTCGCCTGCAGC AGTAGAGGCTTTGGTTGCTGAGGTTAGAATTGAAGGAGTCGTACTGGACA TGTGTGGAGGCCGTGAGGATGCTGTGGCGGTTATTCTCGTCACCAGTTGT ACAGTCGCGACGAACGACGTGAGGACCAGGTGAGATGGTGGCAGCGGTAG GATGATGCAGGTATTATTGTGTGGGGGCGTGTGGTTGTCGCATCTTGCTT CATGCCTGTTGAAGATGGAAACCTGAACTCTTTTCTTTAGTTGTGATGGT GTTGTTGGTGTGCAGCAGGCATGCTCAACTTCTACCTGTTGTGTGCCGTC TTGGTCGTGACGGCATACTTAGACCCTCTTTGTTATTTTCGTGTTAAATT ATGTACTACTTTTAGGAAGTACTGACCTGCCGATTGCTGATCGTTCTGTT CTTGCCAGGCGGGGGGTGGACACCAACCTGGATGCGAGCGCCCCCACTTT TGCTCAGGAATACCTTGCCAGTGGTGCTCAACAACCAGACTGGGTAGTTA CCAGCCCCCCTTACAAAGGCGCAATAAACTTCGTCAAGGGGGCAATGGAG CTAGCTAGGTACGGCGTTGCGCTCAAACTTCCTTTATCCTTCATGGAACC GTGTGGGGATCGCGGGGTATGGCTTCAAAGGAATCCCCATCTATCTGCGT ATTCTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig603:59480..60187+

>mRNA_P-littoralis_Contig603.14.1 ID=mRNA_P-littoralis_Contig603.14.1|Name=mRNA_P-littoralis_Contig603.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig603:59480..60187+ (Pylaiella littoralis U1_48)
ATGCACTTGAAACGTCGGCATCTTGATCGATACTGCACGTCGCCTGCAGC
AGTAGAGGCTTTGGTTGCTGAGGTTAGAATTGAAGGAGTCGTACTGGACA
TGTGTGGAGGCCGTGAGGATGCTGTGGCGGTTATTCTCGTCACCAGTTGT
ACAGTCGCGACGAACGACGTGAGGACCAGCGCCCCCACTTTTGCTCAGGA
ATACCTTGCCAGTGGTGCTCAACAACCAGACTGGGTAGTTACCAGCCCCC
CTTACAAAGGCGCAATAAACTTCGTCAAGGGGGCAATGGAGCTAGCTAGG
TACGGCGTTGCGCTCAAACTTCCTTTATCCTTCATGGAACCGTGTGGGGA
TCGCGGGGTATGGCTTCAAAGGAATCCCCATCTATCTGCGTATTCTTGA
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