mRNA_P-littoralis_Contig116.105.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig116.105.1
Unique NamemRNA_P-littoralis_Contig116.105.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig116.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig116contigP-littoralis_Contig116:369123..369478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size356
Hectar predicted targeting categorysignal anchor
Exons1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789477.9982228-UTR-P-littoralis_Contig116:369122..3691501680789477.9982228-UTR-P-littoralis_Contig116:369122..369150Pylaiella littoralis U1_48UTRP-littoralis_Contig116 369123..369150 +
1680789478.0254745-UTR-P-littoralis_Contig116:369462..3694781680789478.0254745-UTR-P-littoralis_Contig116:369462..369478Pylaiella littoralis U1_48UTRP-littoralis_Contig116 369463..369478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789478.007022-CDS-P-littoralis_Contig116:369150..3694621680789478.007022-CDS-P-littoralis_Contig116:369150..369462Pylaiella littoralis U1_48CDSP-littoralis_Contig116 369151..369462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig116.105.1prot_P-littoralis_Contig116.105.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig116 369151..369462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig116.105.1

>prot_P-littoralis_Contig116.105.1 ID=prot_P-littoralis_Contig116.105.1|Name=mRNA_P-littoralis_Contig116.105.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MSSSGWSWSTFEIVRYDTSKYVNVFESVVHLLSVWVLSWCVFFTMSSTCA
VFLSSILYGTLLSHADCLPRVLLLLLLQRSGLCDCRDAPTLPVPPCSYGE
DSS*
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mRNA from alignment at P-littoralis_Contig116:369123..369478+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig116.105.1 ID=mRNA_P-littoralis_Contig116.105.1|Name=mRNA_P-littoralis_Contig116.105.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=356bp|location=Sequence derived from alignment at P-littoralis_Contig116:369123..369478+ (Pylaiella littoralis U1_48)
TCGGGGTGTTTTTTGTCGGCATGTGTTGATGTCGTCATCGGGATGGTCCT
GGTCCACATTTGAAATCGTACGATACGATACTTCGAAGTATGTCAATGTT
TTCGAGAGCGTTGTTCACCTTTTGAGTGTTTGGGTATTGTCATGGTGTGT
TTTTTTTACGATGAGCTCGACCTGTGCTGTTTTTTTGTCTTCGATACTGT
ACGGTACACTGTTGTCACACGCCGATTGTCTTCCACGTGTGCTGCTGCTT
CTGCTTCTGCAGAGAAGTGGTTTATGTGACTGTCGAGATGCTCCAACGTT
GCCTGTTCCGCCGTGTTCGTATGGTGAAGACAGCTCCTAGTCAAAAGCGT
CGGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig116:369123..369478+

>mRNA_P-littoralis_Contig116.105.1 ID=mRNA_P-littoralis_Contig116.105.1|Name=mRNA_P-littoralis_Contig116.105.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig116:369123..369478+ (Pylaiella littoralis U1_48)
ATGTCGTCATCGGGATGGTCCTGGTCCACATTTGAAATCGTACGATACGA
TACTTCGAAGTATGTCAATGTTTTCGAGAGCGTTGTTCACCTTTTGAGTG
TTTGGGTATTGTCATGGTGTGTTTTTTTTACGATGAGCTCGACCTGTGCT
GTTTTTTTGTCTTCGATACTGTACGGTACACTGTTGTCACACGCCGATTG
TCTTCCACGTGTGCTGCTGCTTCTGCTTCTGCAGAGAAGTGGTTTATGTG
ACTGTCGAGATGCTCCAACGTTGCCTGTTCCGCCGTGTTCGTATGGTGAA
GACAGCTCCTAG
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