mRNA_P-littoralis_Contig603.10.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig603.10.2
Unique NamemRNA_P-littoralis_Contig603.10.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig603.10.2 vs. uniprot
Match: D7FVE4_ECTSI (DnaJ homolog subfamily C member 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE4_ECTSI)

HSP 1 Score: 672 bits (1735), Expect = 1.260e-229
Identity = 411/572 (71.85%), Postives = 442/572 (77.27%), Query Frame = 2
Query:  236 LSVRHLVWVAALLAQALLAECKGKDYYQTLGLKKNAKDAAIKKAYRKLALKYHPDKNQERPEWATKKFADVAEAYEVLSDSEKRSIYDQFGEEGLKHGAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX--GQTFHFETGDGQRTFEQFFRQGTPGGHTKQSRKXXXXXXXXXXXXXXXXXXXXLVRSRPFLWVARHLKNAVVRLKEFFRWINTVLKFTQEHEMKKRKHTKQSRDRNDWPQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPPQDLYPKGSKVGNLSEAKFPKKGSAHVWLVHFYSPQSRECSQLSPTMEKLAEVLHGVAKVGAVDCTGKSERFCAQQGVRELPGVMLVIDGKVTPFNGSIDMKSLHEFVLGGLPAEHVANLRRRDQADKFLQSECQEGSEWGTCGVLFTDKFETTSALKALSFRYRGRVAFGEVRGKNDALANSFHISSYPSLVFFCGGDAGISFRYEGELKAEPLDTFVKSLRDGKKCEDAVRSNAQAREQAAVLRPDDDFSKLRVKQLRELLLAYGEACEGCVEKRDFEQKLREVVVSAQPAR 1945
            + +RHLVW AALLAQ+LL+E KGKDYY  LGLKKNAK++AIKKAYRKLALKYHPDKNQ+R EWATKKFADVAEAYEVLSD+EKRSIYDQFGEEGLKHGAGGG     XXXXXXXXXXXXXXXXXXXXXX  GQ FHFE GD  RTFEQFF  GTPG                                                                                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AKPPQDLYPKGSKVG LSE KFPK GSAHVWLVHFYSPQSRECSQL+PTMEKLAEVLHGVAKVGA+DCTGK E FC QQGVRE PG+MLV+ G+ T F G  D+K LHEFVL GLP+EHVANLRRRDQAD FLQSECQEGSEWG+CG+LFT+KFET+SALKAL+FRYRGRVAFGEVRGKNDALANSFHISSYPSLVFFCGGDAG+SF YEGELKAEPLD FVK LRDGKKC+DA+++NA+ARE+AA LRPDDDFSKLRVKQLRELLLA+G+ C+GCVEKRDFEQKLRE VV+A  AR
Sbjct:    1 MKLRHLVWAAALLAQSLLSEGKGKDYYGALGLKKNAKESAIKKAYRKLALKYHPDKNQDRQEWATKKFADVAEAYEVLSDAEKRSIYDQFGEEGLKHGAGGGDGGAGXXXXXXXXXXXXXXXXXXXXXXXGGQRFHFEAGDAHRTFEQFFATGTPG-------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAKPPQDLYPKGSKVGKLSENKFPKAGSAHVWLVHFYSPQSRECSQLAPTMEKLAEVLHGVAKVGAMDCTGKVESFCVQQGVREFPGLMLVVAGENTNFEGVADLKQLHEFVLEGLPSEHVANLRRRDQADSFLQSECQEGSEWGSCGILFTNKFETSSALKALAFRYRGRVAFGEVRGKNDALANSFHISSYPSLVFFCGGDAGVSFPYEGELKAEPLDAFVKGLRDGKKCKDAIKTNAEARERAAALRPDDDFSKLRVKQLRELLLAHGDPCDGCVEKRDFEQKLREAVVAAHRAR 487          
BLAST of mRNA_P-littoralis_Contig603.10.2 vs. uniprot
Match: A0A6H5JDS5_9PHAE (DnaJ homolog subfamily C member 16 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS5_9PHAE)

HSP 1 Score: 443 bits (1140), Expect = 9.440e-143
Identity = 287/446 (64.35%), Postives = 309/446 (69.28%), Query Frame = 2
Query:  236 LSVRHLVWVAALLAQALLAECKGKDYYQTLGLKKNAKDAAIKKAYRKLALKYHPDKNQERPEWATKKFADVAEAYEVLSDSEKRSIYDQFGEEGLKHGAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX--GQTFHFETGDGQRTFEQFFRQGTPGGHTKQSRKXXXXXXXXXXXXXXXXXXXXLVRSRPFLWVARHLKNAVVRLKEFFRWINTVLKFTQEHEMKKRKHTKQSRDRNDWPQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPPQDLYPKGSKVGNLSEAKFPKKGSAHVWLVHFYSPQSRECSQLSPTMEKLAEVLHGVAKVGAVDCTGKSERFCAQQGVRELPGVMLVIDGKVTPFNGSIDMKSLHEFVLGGLPAEHVANLRRRDQADKFLQSECQEGSEWGTCGVLFTDKFETTSALKALSFRYRGRV 1567
            + +RHLVW AALLAQ+LL+E KGKDYY  LGLKKNAK++ IKKAYRKLALKYHPDKNQ+R EWA KKFADVAEAYEVLSD+EKRSIYDQFGEEGLKHGAGGG  XXXXXXXXXXXXXXXXXXXXXXXXX  G  FHFE GD  RTFEQFF  GTPG                                                                                                      XXXXXXXXXXXXXXXXX KPPQDLYPKGSKVG LSE KFPK GSAHVWLVHFYSPQSRECSQL+PTMEKLAEVL GVAKVGA+DCTGK+ERFC QQGVRE PG+MLV+ G+ T + G  D+KSLHEFVL GLP+EHVANLRRRDQAD FLQSECQEGSEWG+CG+LFT+KFET+SALKAL+FRYRGR 
Sbjct:    1 MKLRHLVWAAALLAQSLLSEGKGKDYYGALGLKKNAKESDIKKAYRKLALKYHPDKNQDRQEWANKKFADVAEAYEVLSDAEKRSIYDQFGEEGLKHGAGGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXGGHRFHFEAGDAHRTFEQFFATGTPG------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXKPPQDLYPKGSKVGKLSENKFPKAGSAHVWLVHFYSPQSRECSQLAPTMEKLAEVLQGVAKVGAMDCTGKAERFCVQQGVREFPGLMLVVAGENTDYEGVADLKSLHEFVLEGLPSEHVANLRRRDQADSFLQSECQEGSEWGSCGILFTNKFETSSALKALAFRYRGRA 344          
BLAST of mRNA_P-littoralis_Contig603.10.2 vs. uniprot
Match: A0A835ZCQ0_9STRA (DnaJ homolog subfamily C member 10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCQ0_9STRA)

HSP 1 Score: 338 bits (868), Expect = 3.010e-101
Identity = 240/576 (41.67%), Postives = 318/576 (55.21%), Query Frame = 2
Query:  269 LLAQALLAECKGKDYYQTLGLKKNAKDAAIKKAYRKLALKYHPDKNQERPEWATKKFADVAEAYEVLSDSEKRSIYDQFGEEGLKHGAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXG--------------QTFHFETGDGQRTFEQFFRQGTPGGHTKQSRKXXXXXXXXXXXXXXXXXXXXLVRSRPFLWVARHLKNAVVRLKEFFRWINTVLKFTQEHEMKKRKHTKQSRDRNDWPQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPPQDLYPKGSKVGNLSEAKFPKKGSAHVWLVHFYSPQSRECSQLSPTMEKLAEVLHGVAKVGAVDCTGKSERFCAQQGVRELPGVMLVIDGKVTPFNGSIDMKSLHEFVLGGLPAEHVANLRRRDQADKFLQSECQE--GSEWGTCGVLFTDKFETTSALKALSFRYRGRVAFGEVRGKNDALANSFHISSYPSLVFFCGGDAGISFRYEGELKAEPLDTFVKSLRDGK--KCEDAVRSNAQAREQAAVLRPDDDFSKLRVKQLRELLLAYGEACEGCVEKRDFEQKLREVVVSAQPA 1942
            LL   L A    +D+Y+TLG+KKNA +  IKKAYRK+A+K+HPDKN +  E A+KKFA++A AYEVLSD++KR IYDQ+GEEGLKHG G G   XXXXXXXXXXXXXXXX        G               TFHF   D    FE+FF   + GG                                                                                                 XXXXXXXXXXXXXXXXXXXXX +P  DLY   S V +L+ +KFP  G+ H+WLV FY+P    C  + PT+E LA+ L G+ KVGAV+C  K ++ CA+ GV+  P +M V+DG VT + G   ++ L EF L  +PAEHV N+RR + A+ FL+ +C +  GS  G C +LFTDK+ET+  +KAL+++YRG+VA GEVRG N A++ +F +++YP L+  CGGD   SF+Y+G+LKAEPL  F++ L      +C +A R+    R +A  L+P DDFSK++   ++ELL   GEAC GC EK+D+   L+  V   + A
Sbjct:   15 LLLCMLAAAVCARDFYKTLGVKKNASEKDIKKAYRKMAIKWHPDKNPDNQEKASKKFAEIAAAYEVLSDADKRKIYDQYGEEGLKHGGGEGGGPXXXXXXXXXXXXXXXXFTFQQGGFGGGGGGTPFXXXXXXXTFHFGGSDPFDLFERFFA--SEGGXXXXX--------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXRPSADLYDARSPVQHLAASKFPGVGARHIWLVEFYAPWCGHCQGMVPTLEALAKELAGIVKVGAVNCE-KEQQLCAKHGVQGYPTLMAVVDGVVTQYQGDNALRPLREFALEQVPAEHVVNIRRMETAEDFLKQQCSKKGGSSSGACAILFTDKYETSPTMKALAYQYRGKVAIGEVRGSNQAVSQAFGVATYPELLVVCGGDKAASFKYDGQLKAEPLQAFLRGLATSAAAQCAEASRAAQARRSRAQALKPTDDFSKMKTSAIKELLTDLGEACVGCTEKQDYVDALKTAVARRRRA 495          
BLAST of mRNA_P-littoralis_Contig603.10.2 vs. uniprot
Match: A0A7R9U5Q8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5Q8_9STRA)

HSP 1 Score: 266 bits (680), Expect = 2.720e-75
Identity = 203/563 (36.06%), Postives = 265/563 (47.07%), Query Frame = 2
Query:  260 VAALLAQALLAECKGKDYYQTLGLKKNAKDAAIKKAYRKLALKYHPDKNQERPEWATKKFADVAEAYEVLSDSEKRSIYDQFGEEGLKH---GAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXGQTFHFETGDGQRTFEQFFRQGTPGGHTKQSRKXXXXXXXXXXXXXXXXXXXXLVRSRPFLWVARHLKNAVVRLKEFFRWINTVLKFTQEHEMKKRKHTKQSRDRNDWPQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPPQDLYPKGSKVGNLSEAKFPKKGSAHVWLVHFYSPQSRECSQLSPTMEKLAEVLHGVAKVGAVDCTGKSERFCAQQGVRELPGVMLVIDGKVTPFNGSIDMKSLHEFVLGGLPAEHVANLRRRDQADKFLQSECQEGSEWGTCGVLFTDKFETTSALKALSFRYRGRVAFGEVRGKNDALANSFHISSYPSLVFFCGGDAGISFRYEGELKAEPLDTFVKSL-RDG-KKCEDAVRSNAQAREQA-AVLRPDDDFSKLRVKQLRELLLAYGEACEGCVEKRDFEQKLREVVVS 1930
            V  LL  A LA   GKDYY+ LG+K+NA +AA+KKAYRKLALKYHPDKN +  E A KKF +V+EAYEVLSD EKR IYDQ GEEGLK+   G GGG                           G+   F+    Q  F+ F     PGG      +             XXXX       RP                        V  F   H                                                                  V  LSEA+FP   S H+W VHFY+ QSR   +L   +E LA+ L    KVGA+DC   S  FC +Q VR   G  L IDG    ++G+   K+ H ++   +P+++V NL R +Q D+FL     +G    +C VLFT KFET   LK ++++YRG VAFGEVRG N  L+  F I  YP++V FCGGD   +   + +L +E L  FV  L ++G +KC  A R  A+ R +    L P  DFSK+++++LRE+L A G  C GC+EK D+ +K+RE V +
Sbjct:   11 VYGLLVGAALA---GKDYYKLLGVKRNADEAALKKAYRKLALKYHPDKNPDDQEGAQKKFTEVSEAYEVLSDPEKRRIYDQVGEEGLKNQQAGRGGG---------------------------GRGGGFQFHGAQDPFKMFEDIFGPGGGFSGGSRFTFSAGGGGFGPGXXXXFSRGGHQRP----------------------RQVYNFDGMHRT----------------------------------------------------------------VRKLSEARFPDASSKHIWFVHFYTAQSRR--ELPEEVELLAQKLGKSVKVGALDCDLHSN-FCRRQRVRG-DGFRLYIDGTHEDYSGASTAKAFHRYISERVPSDYVNNLLRSEQVDEFLTGCKSKGP--ASCIVLFTSKFETPLVLKGMAYQYRGVVAFGEVRGSNPKLSERFGIRKYPTVVAFCGGDQYATIMVD-DLSSEALPDFVADLVKNGERKCVTARREAAKKRRRVHEALDPSTDFSKMKLRELREILAALGSECVGCLEKADYVRKVREAVAA 450          
BLAST of mRNA_P-littoralis_Contig603.10.2 vs. uniprot
Match: A0A2P6U271_CHLSO (DnaJ homolog subfamily C member 10 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U271_CHLSO)

HSP 1 Score: 243 bits (620), Expect = 5.370e-67
Identity = 169/541 (31.24%), Postives = 249/541 (46.03%), Query Frame = 2
Query:  311 YYQTLGLKKNAKDAAIKKAYRKLALKYHPDKNQERPEWATKKFADVAEAYEVLSDSEKRSIYDQFGEEGLKHGAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXGQTFHFETGDGQRTFEQFFRQGTPGGHTKQSRKXXXXXXXXXXXXXXXXXXXXLVRSRPFLWVARHLKNAVVRLKEFFRWINTVLKFTQEHEMKKRKHTKQSRDRNDWPQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPPQDLYPKGSKVGNLSEAKFPKKGSAHVWLVHFYSPQSRECSQLSPTMEKLAEVLHGVAKVGAVDCTGKSERFCAQQGVRELPGVMLVIDGKVTPFNGSIDMKSLHEFVLGGLPAEHVANLRRRDQADKFLQSECQEG----SEWGTCGVLFTDKFETTSALKALSFRYRGRVAFGEVRGKNDALANSFHISSYPSLVFFCGGDAGISFRYEGELKAEPLDTFVKSLRDGKKCEDAVRSNAQAREQAAVLRPDDDFSKLRVKQLRELLLAYGEACEGCVEKRDFEQKLREV 1921
            YY  LG+  +A +  I+KAYR+ AL+YHPD+N ++P+ A +KF ++A AYEVLSD EKR +YD+FGE GL    GG                      XXXXXX   FHF+ GD    FE  F  G  GG  +                                    H +                                       + QG       XX                         +    LY   + V +L++  FP+  +  +WL+ FY+P    C QL+P   KLAE LHGV KV AV+C  + +  C Q G+R  P +  +  G++  + G    + L ++ L  LP +H+ ++ R  Q   FL+ +CQ G    ++WG C +L +DK ET +  K+L+ RY G++AFGE    N  ++ +F + SYP+L+  C G+  +  +YEGE+K+  +  F+     GK C  AV+ +A             DFSK+RV QL+++L A GEAC  CVEK+D+  K+R+V
Sbjct:   33 YYDNLGISPDADEKTIQKAYRRAALRYHPDRNPDKPD-AEEKFREIAAAYEVLSDPEKRQLYDRFGEAGLNQQGGG---------------------PXXXXXXXXNFHFQHGDPFNIFETVFGGGMGGGGQRM-----------------------------------HFQ---------------------------------------FQQGGGMGGGMXXMGGGRQQ------------------RETAGLYDNDAFVQDLTDDTFPEGDTEWIWLIEFYAPWCGHCRQLAPKWRKLAEALHGVVKVAAVNCE-QQQGLCQQYGIRGYPTIRAMSGGQLVDYRGDRSARHLKDWALSLLP-KHIKSVHREAQLSDFLR-QCQAGDKAGAKWGVCALLLSDKGETPALYKSLAMRYLGKIAFGEALRSNAEVSAAFGVRSYPTLLVVCSGNRDVVVKYEGEMKSTKIARFLNQFYSGKACASAVKIDAAT-----------DFSKMRVAQLKQILQAKGEACRECVEKKDYIAKIRQV 445          
BLAST of mRNA_P-littoralis_Contig603.10.2 vs. uniprot
Match: E1Z201_CHLVA (DnaJ homolog subfamily C member 10 n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z201_CHLVA)

HSP 1 Score: 238 bits (606), Expect = 5.910e-65
Identity = 170/551 (30.85%), Postives = 248/551 (45.01%), Query Frame = 2
Query:  287 LAECKGKDYYQTLGLKKNAKDAAIKKAYRKLALKYHPDKNQERPEWATKKFADVAEAYEVLSDSEKRSIYDQFGEEGLKHGAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXGQTFHFETGDGQRTFEQFFRQGTPGGHTKQSRKXXXXXXXXXXXXXXXXXXXXLVRSRPFLWVARHLKNAVVRLKEFFRWINTVLKFTQEHEMKKRKHTKQSRDRNDWPQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPPQDLYPKGSKVGNLSEAKFPK-KGSAHVWLVHFYSPQSRECSQLSPTMEKLAEVLHGVAKVGAVDCTGKSERFCAQQGVRELPGVMLVIDGKVTPFNGSIDMKSLHEFVLGGLPAEHVANLRRRDQADKFLQSECQEG-----SEWGTCGVLFTDKFETTSALKALSFRYRGRVAFGEVRGKNDALANSFHISSYPSLVFFCGGDAGISFRYEGELKAEPLDTFVKSLRDGKKCEDAVRSNAQAREQAAVLRPDDDFSKLRVKQLRELLLAYGEACEGCVEKRDFEQKLREV 1921
            +A  +   YY  LG+  +A +  I+KAYR+ AL+YHPD+N ++P+ A ++F +VA AYEVLSDSEKR IYD++GE+GL     GG                           G  FHF+ GD    FE  F  G  GG                  XXXXXXXXX                                                                                                 LY   + V +L+E  FP+  G   +WL+ FY+P    C QL+P   K+AE LHGVAKV AV+C  + +  C +QGVR  P +     G +  + G    + L ++ LG LP +H+  + ++     FL+ +C  G     S+WG C +L +DK ET++  K+L+ RY+G++AFGE    N  ++  F +S YP+L+  CGG+  +  +YEGE+K+  L  F+     GK C  A++ +A            +D SK+RV QL+++L + GE C+ CVEK D+  K+R V
Sbjct:   23 VAAVRDTKYYDHLGVSPDADERTIQKAYRRAALRYHPDRNPDKPD-AEERFREVAAAYEVLSDSEKRQIYDRYGEQGLNQQQQGGGGP------------------------GGNFHFQHGDAFNIFETVF--GGMGGXXXXRMHFQFGGGGGGMGXXXXXXXXXXXXXXXXXXXXXETAG---------------------------------------------------------------------------------LYDNDAFVQDLTEDTFPEGDGDGWIWLIEFYAPWCGHCRQLAPKWRKVAEALHGVAKVAAVNCE-QQQALCQEQGVRGYPTIKAFSGGHLHEYKGDRSARHLKDWALGLLP-KHIKTVNKQQHLADFLR-QCTSGTGGGSSKWGVCALLLSDKSETSALYKSLALRYKGKIAFGEALRSNAEISREFGVSKYPTLLVICGGNKDVVVKYEGEMKSTKLSRFLNQFYSGKACAAAIKIDAA-----------NDLSKMRVGQLKQILESRGEKCKECVEKADYVAKIRAV 451          
BLAST of mRNA_P-littoralis_Contig603.10.2 vs. uniprot
Match: A0A2P6VLV0_9CHLO (DnaJ homolog subfamily C member 10 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VLV0_9CHLO)

HSP 1 Score: 230 bits (586), Expect = 2.580e-62
Identity = 166/541 (30.68%), Postives = 252/541 (46.58%), Query Frame = 2
Query:  311 YYQTLGLKKNAKDAAIKKAYRKLALKYHPDKNQERPEWATKKFADVAEAYEVLSDSEKRSIYDQFGEEGLKHGAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXGQTFHFETGDGQRTFEQFFRQGTPGGHTKQSRKXXXXXXXXXXXXXXXXXXXXLVRSRPFLWVARHLKNAVVRLKEFFRWINTVLKFTQEHEMKKRKHTKQSRDRNDWPQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPPQDLYPKGSKVGNLSEAKFPK-KGSAHVWLVHFYSPQSRECSQLSPTMEKLAEVLHGVAKVGAVDCTGKSERFCAQQGVRELPGVMLVIDGKVTPFNGSIDMKSLHEFVLGGLPAEHVANLRRRDQADKFLQSECQEGS---EWGTCGVLFTDKFETTSALKALSFRYRGRVAFGEVRGKNDALANSFHISSYPSLVFFCGGDAGISFRYEGELKAEPLDTFVKSLRDGKKCEDAVRSNAQAREQAAVLRPDDDFSKLRVKQLRELLLAYGEACEGCVEKRDFEQKLREV 1921
            YY+ LG+  +A D  I+KAYR+ AL+YHPD+N ++P+ A ++F ++AEAYEVLSD EKR  YD+ GE GLK                       XXXXXXXXXX   FHF+  D    FE  F  G  GG                                                +  F++    +         +R+ +                                                   LY   + V +L++  FP+  G   +WL+ FY+P    C QL+P   KLAE LHGV KVGAV+C  + +  C Q G+R  P +     G++  + G    K L ++ L  LP +H+  + ++ Q + FL+ +C  GS   +WG C +L +++ +T++  K+L+ RY G+VAFGEV   N  ++ +  ++ YP+L+  CGG+  +  +YEGE+K+  L  F+    +GK C  AV+ +A             DFSK+RV QL+++L + GE C  CVEK D+  ++R+V
Sbjct:   43 YYEHLGVSPDADDRTIQKAYRRQALRYHPDRNPDKPD-AEERFREIAEAYEVLSDGEKRQTYDRLGEAGLKQ----------------------XXXXXXXXXXXXXFHFQHDDPFNIFENVFGGGMGGGQ-----------------------------------------------RMHFQFGGGGMXXXXXXXXXQRRES-------------------------------------------------AGLYDNDAFVQDLTDDTFPEGDGDGWIWLIEFYAPWCGHCRQLAPKWRKLAEALHGVVKVGAVNCE-QQQALCQQNGIRGYPSMKAFSGGRLHDYQGDRSAKHLRDWALSLLP-KHIKTVNKKQQLEDFLK-QCAPGSGSSKWGVCALLLSNRGDTSALYKSLALRYLGKVAFGEVLRSNAEVSAAVGVTEYPTLLVVCGGNKDVVVKYEGEMKSTKLARFLNQFYNGKACAAAVKIDAAT-----------DFSKMRVAQLKQILESRGEKCRECVEKGDYVARIRQV 450          
BLAST of mRNA_P-littoralis_Contig603.10.2 vs. uniprot
Match: W7TT31_9STRA (DnaJ homolog subfamily C member 16 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TT31_9STRA)

HSP 1 Score: 217 bits (553), Expect = 6.730e-57
Identity = 194/556 (34.89%), Postives = 265/556 (47.66%), Query Frame = 2
Query:  299 KGKDYYQTLGLKKNAKDAAIKKAYRKLALKYHPDKNQ-ERPEWATKKFADVAEAYEVLSDSEKRSIYDQFGEEGLKHG----AGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXGQTFHFETGDGQRTFEQFFRQGTPGGHTKQSRKXXXXXXXXXXXXXXXXXXXXLVRSRPFLWVARHLKNAVVRLKEFFRWINTVLKFTQEHEMKKRKHTKQSRDRNDWPQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPPQDLYPK---GSKVGNLSEAKFPKKGSAHVWLVHFYSPQSRECSQLSPTMEKLAEVLHGVAKVGAVDCTGKSERFCAQQGVRELPGVMLVIDGKVTPFNGSIDMKSLHEFVLGGLPAEHVANLRRRDQADKFLQSECQEGSEWGTCGVLFTDKFETTSALKALSFRYRGRVAFGEVRGKNDALANSFHISSYPSLVFFCGGDAGISFRYEGELKA------EPLDTFVKSLRDGKKCEDAVRSNAQ-AREQAAVLRPDDDFSKLRVKQLRELLLAYGEACEGCVEKRDFEQKLREV 1921
            + KD Y+ LG+KK A DA +KK YRKLA+K+HPDK+  E  E ATK+F++VAEAYE LSD +KR IYDQ G EG+K+     AGG                     XXXX    +  HFE  D  + FEQ F  G  G        XXXXXXXXXXXXXXXXXXXX                        F+ +  +  F                      QG                                     Q LY      SKV  LS +KFP   +  VW + FYS     C    P +E +A  L G+ KVG V C   +   CA+ GV+ LP   L+++GK   + GS++ KS+ +FV    PA  +AN+RR   A  F ++    G + G   VLFTD++ET    K L+++ R ++AFGEVR  N  +++ F +  YP+L+FFCGG+   +    G  +       + L  +   L D K C +A R   + A  +  ++  + DFS +RV +LR LL   G+ C GCVEK D+ +K+R +
Sbjct:   77 EAKDLYKILGVKKTATDAQLKKQYRKLAMKHHPDKHPAEEKEAATKRFSEVAEAYETLSDPDKRRIYDQVGYEGVKNAGQQQAGG---------------FPGGFGXXXXAGGAEGMHFEFSDAFKLFEQMF--GAAG--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQGMEGMGGF----------------------QGGVHDDGARS----------------------------QHLYGGLNGKSKVVRLSASKFPDAKAKFVWFIEFYSVNCPHCQNAVPAVEAVAGKLEGIVKVGGVSCDADNS-LCAKHGVQSLPSFKLILEGKAIDYEGSVETKSMLDFVTENYPAP-IANIRRTAAASDFFKA-VVAGKKAGAM-VLFTDEYETPLLYKGLAYQLRDKLAFGEVRASNLQVSDHFGVGKYPTLLFFCGGEEASAVVEYGNGRGGIGKDVKTLKEWATGLADRKACLEAARKGKRSAPRKKPIIDLEQDFSAMRVAKLRALLQEQGDECVGCVEKEDYVRKIRAL 553          
BLAST of mRNA_P-littoralis_Contig603.10.2 vs. uniprot
Match: A0A5J4YFN2_9CHLO (DnaJ homolog subfamily C member 10 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YFN2_9CHLO)

HSP 1 Score: 210 bits (534), Expect = 8.060e-55
Identity = 194/585 (33.16%), Postives = 282/585 (48.21%), Query Frame = 2
Query:  218 TEHAMRLSVRHLVWVAALLAQALLAECKGKDYYQTLGLKKNAKDAAIKKAYRKLALKYHPDKNQERPEWATKKFADVAEAYEVLSDSEKRSIYDQFGEEGLKH-GAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXGQTFHFET-GDGQRTFEQFFRQGTPGGHTKQSRKXXXXXXXXXXXXXXXXXXXXLVRSRPFLWVARHLKNAVVRLKEFFRWINTVLKFTQEHEMKKRKHTKQSRDRNDWPQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPPQ---DLYPKGSKVGNLSEAKFPKKGSAHVWLVHFYSPQSRECSQLSPTMEKLAEVLHGVAKVGAVDCTGKSERFCAQQGVRELPGVMLVIDGKVTPFNGSIDMKSLHEFVLGGLPAEHVANLRRRDQADKFLQ--------SECQEGSEWGTCGVLFTDKFETTSALKALSFRYRGRVAFGEVRGKNDALANSFHISSYPSLVFFCGGDAGISFRYEGELKAEPLDTFVKSLRDGKKCEDAVRSNAQAREQAAVLRPDDDFSKLRVKQLRELLLAYGEACEGCVEKRDFEQKLREVVVSA 1933
            T  +++L+ R L  V  L   A + E K   YY  LG+  +A +  IKKAYRK A+K+HPD+N +  E A +KF ++A AYEVL+D EKR +YDQ+GEEGL+  G  GGXXXXX                      G  F F++ GD    F  FF            +K                     V           +++ ++                                      G     XXXXXXXXXXXXXXXXXXXXXXXXXXXX +  Q    LY   + V  L+   FP      V+LV FY+P    C QL+P   K+AE L G+ KV AV+C  + ++ C + GV+  P +  V++GK+  + G     +L  + L  +P + V  + +  Q   FLQ           ++ + W  C +L T K +T +  K+LS +Y G++AFGE RG N  L++ F + SYPSL+  C GD     +YEGE K+ P+ +F++   DG+KC   V+ N           P  D+S+++V+ L++LL   G     C+EK DF  K++++  ++
Sbjct:    3 TFRSIKLASRVLFVVLNLFCVACVRESK---YYDLLGVAHDADEPTIKKAYRKQAMKWHPDRNPDNVEKAEQKFREIAAAYEVLADDEKRKLYDQYGEEGLRPTGPDGGXXXXXGGFP------------------GGGFRFQSSGDPFEMFNTFFGXXXXXXXXXXQQKFK-------------------VNMXXXXXXXXGIEDLLMGAMXXXXXXXXXXXX-----------------------GGGMPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHQAGGGLYDGDAHVLPLTATNFPTAKDQSVYLVEFYAPWCGHCKQLAPKWSKVAESLKGIVKVAAVNCE-EDKQLCGKHGVQGYPTIKSVVNGKLHDYQGDRSASALKNWGLSLIPNK-VVTVNKPAQLSDFLQRCSSSSSNKSGKDSASWSLCVLLLTAKSDTAALYKSLSGQYAGKIAFGEARGSNKELSDRFKVDSYPSLLAICNGDESSVQQYEGEFKSGPITSFLEKFSDGRKCSSMVKLN-----------PKTDYSRMKVRDLQQLLKDRGVDTRDCLEKTDFVSKVQQLAAAS 511          
BLAST of mRNA_P-littoralis_Contig603.10.2 vs. uniprot
Match: A0A835YCA2_9CHLO (DnaJ homolog subfamily C member 10 n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YCA2_9CHLO)

HSP 1 Score: 206 bits (525), Expect = 7.680e-54
Identity = 200/592 (33.78%), Postives = 253/592 (42.74%), Query Frame = 2
Query:  245 RHLVWVAALLAQALLAE--CKGKDYYQTLGLKKNAKDAAIKKAYRKLALKYHPDKNQERPEWATKKFADVAEAYEVLSDSEKRSIYDQFGEEGLKHGAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXGQTFHFETGDGQRTFEQFFRQGTPGGHTKQSRKXXXXXXXXXXXXXXXXXXXXLVRSRPFLWVARHLKNAVVRLKEFFRWINTVLKFTQEHEMKKRKHTKQSRDRNDWPQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPPQDLYPKGSKVGNLSEAKFPK-KGSAHVWLVHFYSPQSRECSQLSPTMEKLAEVLHGVAKVGAVDCTGKSERFCAQQGVRELPGVMLVIDGKVTP-FNGSIDMKSLHEFVLGGLPAEHVANLRRRDQADKFLQSECQEGS----------EWGTCGVLFTDKFETTSALKALSFRYRGRVAFGEVR----GKNDALANSFH------------ISSYPSLVFFCGGDAGISFRYEGELKAEPLDTFVKSLRDGKKCEDAVRSNAQAREQAAVLRPDDDFSKLRVKQLRELLLAYGEACEGCVEKRDFEQKLREVVVS 1930
            RH   + ALL   L ++   KG+D+Y+ LG+ ++A +A IKKAYRK ALK+HPD+N +  + A  KF DVA AYE LSD+EKR IYDQ GEEGLK G  GGXXXXXXXXXX                     +F  GD    F  FF                             XXXXX  R R F                                                  G                      XXXXXXXXXXX     DLY   S V  L +  FP   G   VWLV FY+P    C  L+P     A+ LHGV +VGAV+C    E  C QQGVR  P +   + G     +NG    K+L  + LG +P + V  L   D       S C  GS           W  C +L T K ET +  +ALS  Y G+V+FGE+R    G   A A +                  P L+  C GDA  + RY G+LK++PL   +++   GKKC  AVR +A             D  +    QL++L+   G  C GC EK DF ++LRE + +
Sbjct:    3 RHRALLGALLLLLLASDVWAKGRDFYKILGIARDADEATIKKAYRKQALKWHPDRNPDNKDKAEDKFRDVAAAYETLSDAEKRRIYDQMGEEGLKQGGPGGXXXXXXXXXXAHF----------------NMNFGGGDPFEMFNMFF----------------------------GXXXXXXARRRDF--------------------------------------------------GTKNFNMGGGQRGPQFGGGGGPFXXXXXXXXXXXXXXGGDLYEGDSNVQQLGKDHFPPGSGDNWVWLVEFYAPWCGHCKALAPKWAAAAKSLHGVVRVGAVNCDAHKE-LCGQQGVRGYPTIKAFVPGSQPKVYNGDRSAKALSAWALGLVPNK-VTLLGGADSPLSAFTSTCGGGSGRGHAKGAQASWSLCIILLTTKAETPAMFRALSGAYAGKVSFGELRLGAKGPTSAAAAAVARALGVDVEAERAAGKLPLLLSVCNGDAQGAVRYTGQLKSDPLVRHIEAYAAGKKCAKAVRLDAST-----------DLGRFSAGQLKQLVKDKGLDCRGCTEKDDFVRRLREAIAA 487          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig603.10.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVE4_ECTSI1.260e-22971.85DnaJ homolog subfamily C member 16 n=1 Tax=Ectocar... [more]
A0A6H5JDS5_9PHAE9.440e-14364.35DnaJ homolog subfamily C member 16 n=1 Tax=Ectocar... [more]
A0A835ZCQ0_9STRA3.010e-10141.67DnaJ homolog subfamily C member 10 n=1 Tax=Tribone... [more]
A0A7R9U5Q8_9STRA2.720e-7536.06Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A2P6U271_CHLSO5.370e-6731.24DnaJ homolog subfamily C member 10 n=1 Tax=Chlorel... [more]
E1Z201_CHLVA5.910e-6530.85DnaJ homolog subfamily C member 10 n=1 Tax=Chlorel... [more]
A0A2P6VLV0_9CHLO2.580e-6230.68DnaJ homolog subfamily C member 10 n=1 Tax=Micract... [more]
W7TT31_9STRA6.730e-5734.89DnaJ homolog subfamily C member 16 n=1 Tax=Nannoch... [more]
A0A5J4YFN2_9CHLO8.060e-5533.16DnaJ homolog subfamily C member 10 n=1 Tax=Treboux... [more]
A0A835YCA2_9CHLO7.680e-5433.78DnaJ homolog subfamily C member 10 n=1 Tax=Edaphoc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig603contigP-littoralis_Contig603:41249..50983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVE4
Preferred namePDILT
PFAMsArmet,DnaJ,Thioredoxin,Thioredoxin_6
Model size3424
Max annot lvl2759|Eukaryota
KEGG koko:K09510,ko:K09584,ko:K20354
KEGG Pathwayko04141,map04141
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006457,GO:0006950,GO:0008150,GO:0009966,GO:0009987,GO:0010646,GO:0010941,GO:0012505,GO:0016853,GO:0016860,GO:0016864,GO:0023051,GO:0033554,GO:0034976,GO:0042981,GO:0043067,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0080134,GO:0080135,GO:0140096,GO:1900407,GO:1902175,GO:1902531,GO:1902882,GO:1903201,GO:2001233,GO:2001242
Exons9
Evalue2.68e-237
EggNOG OGsCOG0484@1|root,COG0526@1|root,KOG0191@2759|Eukaryota,KOG0714@2759|Eukaryota
Ec32 ortholog descriptionHeat shock protein 40 like protein
Ec32 orthologEc-14_000800.1
EC5.3.4.1
Descriptionprotein folding
Cds size1719
COG categoryO
BRITEko00000,ko00001,ko01000,ko03110,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig603.10.2prot_P-littoralis_Contig603.10.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig603 42725..50754 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791257.4905655-UTR-P-littoralis_Contig603:41248..427241680791257.4905655-UTR-P-littoralis_Contig603:41248..42724Pylaiella littoralis U1_48UTRP-littoralis_Contig603 41249..42724 -
1680791257.6365044-UTR-P-littoralis_Contig603:50754..509831680791257.6365044-UTR-P-littoralis_Contig603:50754..50983Pylaiella littoralis U1_48UTRP-littoralis_Contig603 50755..50983 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791257.5080876-CDS-P-littoralis_Contig603:42724..428851680791257.5080876-CDS-P-littoralis_Contig603:42724..42885Pylaiella littoralis U1_48CDSP-littoralis_Contig603 42725..42885 -
1680791257.5338995-CDS-P-littoralis_Contig603:43317..434201680791257.5338995-CDS-P-littoralis_Contig603:43317..43420Pylaiella littoralis U1_48CDSP-littoralis_Contig603 43318..43420 -
1680791257.5477245-CDS-P-littoralis_Contig603:43806..439261680791257.5477245-CDS-P-littoralis_Contig603:43806..43926Pylaiella littoralis U1_48CDSP-littoralis_Contig603 43807..43926 -
1680791257.5571544-CDS-P-littoralis_Contig603:44248..444511680791257.5571544-CDS-P-littoralis_Contig603:44248..44451Pylaiella littoralis U1_48CDSP-littoralis_Contig603 44249..44451 -
1680791257.5685477-CDS-P-littoralis_Contig603:44853..450641680791257.5685477-CDS-P-littoralis_Contig603:44853..45064Pylaiella littoralis U1_48CDSP-littoralis_Contig603 44854..45064 -
1680791257.5807421-CDS-P-littoralis_Contig603:45321..455181680791257.5807421-CDS-P-littoralis_Contig603:45321..45518Pylaiella littoralis U1_48CDSP-littoralis_Contig603 45322..45518 -
1680791257.5994732-CDS-P-littoralis_Contig603:45848..461011680791257.5994732-CDS-P-littoralis_Contig603:45848..46101Pylaiella littoralis U1_48CDSP-littoralis_Contig603 45849..46101 -
1680791257.610258-CDS-P-littoralis_Contig603:46236..465641680791257.610258-CDS-P-littoralis_Contig603:46236..46564Pylaiella littoralis U1_48CDSP-littoralis_Contig603 46237..46564 -
1680791257.6198483-CDS-P-littoralis_Contig603:50611..507541680791257.6198483-CDS-P-littoralis_Contig603:50611..50754Pylaiella littoralis U1_48CDSP-littoralis_Contig603 50612..50754 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig603.10.2

>prot_P-littoralis_Contig603.10.2 ID=prot_P-littoralis_Contig603.10.2|Name=mRNA_P-littoralis_Contig603.10.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=573bp
MRLSVRHLVWVAALLAQALLAECKGKDYYQTLGLKKNAKDAAIKKAYRKL
ALKYHPDKNQERPEWATKKFADVAEAYEVLSDSEKRSIYDQFGEEGLKHG
AGGGHGGSAGGFPHGFESGGFPGGQGSGRGGGQTFHFETGDGQRTFEQFF
RQGTPGGHTKQSRKTSDAQRTFEQFFRQGTPGGALVRSRPFLWVARHLKN
AVVRLKEFFRWINTVLKFTQEHEMKKRKHTKQSRDRNDWPQGGGGGGSMF
DDFFGGGGGFGSGGGFGGGGGGGRRAKPPQDLYPKGSKVGNLSEAKFPKK
GSAHVWLVHFYSPQSRECSQLSPTMEKLAEVLHGVAKVGAVDCTGKSERF
CAQQGVRELPGVMLVIDGKVTPFNGSIDMKSLHEFVLGGLPAEHVANLRR
RDQADKFLQSECQEGSEWGTCGVLFTDKFETTSALKALSFRYRGRVAFGE
VRGKNDALANSFHISSYPSLVFFCGGDAGISFRYEGELKAEPLDTFVKSL
RDGKKCEDAVRSNAQAREQAAVLRPDDDFSKLRVKQLRELLLAYGEACEG
CVEKRDFEQKLREVVVSAQPAR*
back to top

mRNA from alignment at P-littoralis_Contig603:41249..50983-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig603.10.2 ID=mRNA_P-littoralis_Contig603.10.2|Name=mRNA_P-littoralis_Contig603.10.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=9735bp|location=Sequence derived from alignment at P-littoralis_Contig603:41249..50983- (Pylaiella littoralis U1_48)
CCCCTGCTCCCTGTCAGGGCTGGCGAGACCAATGGTAGATGACAAGAATA AATAATGGTTATTTATTCTTGTCATCTACCATTGGGCGAGACCACACGCA CTCACATTCGCAAACATCTTACATCTGTGTACCTCTTGTTTCTCCTTTCC AAAAGACGTTCGTGTTCGGCTGGCGAAGCGCACACAAGTATCTCGTTTCG CGGAATCTACGAAGGGAACAGAGCACGCCATGAGGTTGTCTGTTCGACAT CTCGTCTGGGTTGCTGCTCTTTTGGCCCAGGCTCTGCTGGCGGAATGCAA AGGAAAGGACTACTATCAGACGCTTGGTCTAAAGAAGAACGCTAAGGATG CCGCCATCAAGAAGGCTTACAGGTGGGTATGAGGGTGTGATTGTGTTGTG TACGTGAAATGTTTGATGAGAGCTACGTACCAGGTAGCACCCGGTATCAT GTGAACTTGTACGAAAAAGCGGACGTGTAATAATGATCAACATCGAGACA CCGCTCGACTCGCCAAGCAGTGCTTACACCTGTTCAGAAATTGTCGAAAG CAGTTGATGACTTGTTCGGCGTGCTTCACCGCGCACACAGTGGTCAATAT TTCCATGTCGTTACCTTCCTGTGTCTCGAAAGACGGCACCATCAAGTCGA GAAGAGAGGGACAGAGAGGAAACAATCTGTGTACGTATCATACTTCGAAG CAGATTTTTGAGCTGTCCACATGGAGCATTCTCATTGGTCGGGCACTTTC GGGTATCTCTCCGCCCTACAGCAGGTCCCCAGTCCCCAGTTAGGAGCAGC AGTTACACTACAATTATGTATAGCAGAAATCCTAATGTACTCATAGGTCG AGTCCTGCTGCTGTTGATGGTGCAGCAAAGTACGACGAGAAGTAGTCGAG TCAATTCTGTTTCAAGTCATACCTCCGGTCTATCGCACCAGTGGCCATAG GATGAATTGTCGAGTTGGACCTACAGAAATCAACAAGCGTTAATATCCTC TGCTGGGGCTTAGATAGCGTATAATGGGTCGCAGCAGTGGCTCAAAAACT CCGCAGGATCCCTGAAAAACTCCGCAATCTAGTCTGACACCAAACGTTTG ACGCAGCTGTACTCGCCGCCACCGTCATTGGCACCAATCTTCTGAACTGC GGTTCGCCCGAGATAGCTAGTGGCGCTTTGACCCGTAGGTCAGGAGGTTG GGGTTTTGGCGGCGAGTACAGCAGTGGAAGATAGCGCAGCAGAGCAAGAT GTATTCGGAATCTGTCCAGTTTTGCGGACTTTTTGAGCCACTGCTGCGGC CTGCAATATCTAAGCCCCAGCAGCAGATCTGAATGTGCTGACACACATGA CACACATGTAGCTACGACATGACGTCTCCTGATCGGAACTAGGTTTTCGC GCACGCGCGGACAACAACCCTTACTGCAGCCTTCTGAAAATAAGCTCTTT TAACTTGATTTTAGATTTGTTGAAGAATATCGTCATATTTATACATGAGG TTGGAGGTAGACGTGTGAAATGTATTCAAAGAGAAGCCCCTTGCTGCCGT TGTGTGCAACAACCAACAGTTTTTCTCATTCCCGACGCCTTCCAACTGGT GTGAGGTACCCAGTGTGTGATTTGTCAGGACCCCTTCGCTGTTTTTCAAA CAAAATCCGTGCCTCTCAGCAATCTGTTGTTTGTGGACCCTCCATGGTAA GGTTGATTACCGTAGGGTCAGCCCCCAGGTAACATGGTGTTCCTCATCCT CTGTATTAACCAGATTAATCATACGAGGTGCAAGTACTTCCACCAGTACT TCCTGGGAGTGGAAAACTACTCCAAGTGTGTCGCGAGTGGAAAAACATGT TCGACTCCCACAGTCGACGAGGGAAAGGGACGGTTGACCCCCGCTCGCGG TAAAAAACTGAGAAGCAAAATTGACAAGCACCGCAGAAGGTGGTTTAAGG AAAGAAAAAAACGCCTGTGTGACCTCCCGTCTGTGTGGCCCCGGCTGGTT CACCCATGTCATACCGAAAGGTGTAAGACTGCTGCCCAGAATAAAACGGA TGTACACACACACCGGTAAGTCGCACATAGCGCCACAGTACCTCTTTCCT GTTCTATTCCGCCGCACTGGCTTCAGCTACTGTACTGATGTAGAATGTAA AATACAGCAGTACCTTAGGTGTATCATTTTCACCAATGATTTCCTCACCA CGTCAACTCTGCAGCTGCATCGTTCCTTGGTCCATCTCCTTCTGGCTGAC ACTACACTTCAGAGTACTCTGTTCATTCGGTCACTCAACATGAGACACTC GAAAGGGGAAAGGAGTCCTTTCCTGAGCCACCCCGACCTTCCTTATGCAT ACCGTGAATGTTAGTGAACTTTCGGGGGGCCAAATTGAATTTTGGATTAC ATTTATCGAGAGAAGCCCAGGCACCATCGAAGGCACGGAGTCGTAAGGTG GGAGGGGAGCGTCGAAACCTCATGCACGCGACCTCGGCTGTACATCGACT TTGTACGTCAGAACACTGAAGGGTGGAAGAGTAGCCGTGGTCCTGCTTGG CAGACTCGTTCACAGGCGTTGCAGGCCAAAGGAAACGAAAAAAAAATGCA GACAAAAATCGGGGCGTTTTGGCTCAAGTAGGAGTTTGTGTTTTTGCCAG CCCCCCCCCCAAATTTCGGTGTCGACACCACTGCTGGACCCGCTTGGTCA TCATTTCTTGCTCGTCGCTCAGGCCATGGATCGCCACGAAAGTAGAGTCA TATCAAGCAGGTCACACCCTCTATCGTAAAGCTGTTGATACGCTCTGATT TTGCTTTTAGCGGGAAAAATGCTGCGTCATCACATCCGGATTCGAACCGG GTGCTGTTGTTTCATGCGACCCCTTGCAGCTCTCGGGAGGTAACTTTCAT ACCAAGGTTACAACTTGTGCCCAAAATAGAGTGCCCAAAATCGGCCGATA CTCCACCACAGCATGGTTACAGAAGCATAGTACGCATCCAGCTTTTGCAC AATTTGGGACCCACACTACGGCGGTCGATGTAGGCCTGCGGAAGTCGCCT AAAATCAGCCAAATCCAGTGTAAACATCAGTAGTCTACAGCGGCGCAATG TGGCCGTCCAAAATGATGACGAGGCCACCTCCACAAATGTTGTGGAGGCC CTTGGAAAAAAAAATGACTTCTCGTCAAGGTTATAACCTCTTGAGAGTGC CTCAAATTGCCCAGAATTCTGCAGGCATGTAGCTGGATTGATCTAGTACT CATCCCTCCATTGCATAATTTTGGATCAACACTACGGCGGGAGGTGTGGC AACGTGAGCGATTTTGGACTCGGAACAACCCCGAGAGTTGTGATTCCAGC ATTTATTTTTGTCTTCATAAAAAAATATATCCGATGTTGTGTGTGTGTTG TCATCCCTTTAATTGGACGCCACTTTACACCTTTCGGGTAGGTAGACGCT CCAACCGGGGTCACACAGGGGGAAGTCAACGCGGGAGATTTTTTTTTTTT GCTCCACTCCCTTCTGCGGTGTTTGCCTTTTGGTCGAGCTTTTATCGCGA GAAAGGGGACAGCAATCCCTTTCCCTCGTCGATGGTACGATAGTATGTGG CATTTTTTTAGGCTGCAACGTCTGTGCGTTTGAGTACATTGATGACGTTT TTTTTTACTGAATGTTTGCATGTGTCAGCCAAATCTGTATTTCTAGTAAC TAAAAAGACCCCAAAATTGCACAGATGCTGACTGGGGGTGCATGAGCTTT GCAGACCGATTGTGATCTGAGTACTGGGATTTCAATACTCCACCTACGAG ATCTGAGCTCTGTGGTCCTTTTTGCACTACATCTGACTGGTGCGGCGAAG TACTGGTAGTGGCCGATCTAGTCCATTTCATTTAGGTGGGTTCCTCGCGT AGAGGGGCGCCAAACAGCCTACCGGTTTGCTTTCGTTCGCGATGGCGCGG CGTTTCTCCAGCTCCAGAACAAAATCCAGACGCACGTGAAGCACGCGCAA AGTTATGGTGAAACGTCAGTATGCTCTCCCGCTCATGTGGAAGGGAGTGC ATTCCTGTAAAATTTGTGGCTTTACGGGTATCTTCGTGGTTCAGGACCCA ACAATGGGCCCCAGCTGGTTCAAAATCGGCGAGAAGGACACTACACGTTA TTTTTCCATGTTTGCATGCGTTGCAACACAGCAGCACATGGTCAGCGGGT ACTGGAGTTTATCTGATCGCTGTCGGTCCCACATTTTGTTTCGACTCTCT GAGCTCGTCGCCATTTGACAGGCATTTTTTTTCGCAAGCTCACGCCTCGG CCTTTGTCCAGTTCCAGCCAGCGCATGCCCTTCCATGCCATTCACATACA TGTCTCGAGTGGAACTTCCTCGCAAACTCCTCTGCTGGATGTCACGTATG ACGTGCGCAAATTAACCAGGAAGCTCGCTCTAAAGTATCACCCTGACAAG AACCAAGAGAGGCCGGAATGGGCCACGAAGAAGTTCGCCGACGTTGCCGA GGCTTACGAAGTTCTGTCCGACTCGGAGAAGCGAAGCATCTATGATCAGT TCGGCGAGGAAGGCCTGAAGCACGGGGCCGGCGGTGGCCATGGCGGCAGC GCAGGAGGTTTCCCCCACGGCTTCGAGTCTGGCGGGTTCCCTGGTGGACA AGGCTCCGGTCGAGGCGGTGGCCAGACGTTCCATTTCGAGACTGGCGACG GGCAGAGGACGTTCGAGCAGTTCTTCAGACAGGGTACCCCTGGAGGTGCG TTGGTGCGAAGCCGGCCTTTCCACTGGGTCGCTCGGCACCTCAAGAATGC TGTGGTACGATTGAAAGAGTTTTTCCGGTGGATCAACACCGTTCTCAAAT TCACGCAAGAGCACGAAATGAAGAAGCGGAAGCATACGAAACAGAGTCGG AAGACTAGCGACGCGCAGAGGACGTTCGAGCAGTTCTTCAGACAGGGTAC CCCTGGAGGTGCGTTGGTGCGAAGCCGGCCTTTCCTCTGGGTCGCTCGGC ACCTCAAGAATGCTGTGGTACGATTGAAAGAGTTTTTCCGGTGGATCAAC ACCGTTCTCAAATTCACGCAAGAGCACGAAATGAAGAAGCGGAAGCATAC GAAACAGAGTCGGGACCGAAACGACTGGCCGCAAGGTGCGTCCGTGTATG ATACCTGGAACCTCTCTTTGACCCACCCACCCACGGATTCGTCAGGCTCG CATTTTGTTCGGTACAAACACGAAGCCCTCACCCCCCACCGTACCCTGAC TGCCCGCAGCCTGTGTGCATGGCACACACGTTTTTGACGTGGTGTTGACT GGCTTTTCCCGTGATTTTGTCTTACTTGTGCCTTGCTGGGCCCATCAGCG GCCCCCTGACGATCTACTTATGTGTATGTCCAATTCCTTCGAACACCACT TTATCCACCTATATACTCCTTCCACACGTGTGGTGTTGGTTCGTATTATA TACGCGCAAAACTAGGGGGAGGCGGAGGCGGCAGTATGTTCGACGACTTC TTCGGCGGGGGCGGTGGCTTCGGCAGCGGCGGTGGCTTCGGCGGCGGCGG TGGCGGCGGAAGGAGGGCGAAACCCCCGCAGGACTTGTACCCTAAGGGAT CCAAGGTCGGCAACCTATCTGAGGCCAAGTTTCCCAAGAAGGGCTCCGCA CACGTCTGGCTGGTGAGCGTTGGGGTGGCTGCTCGACTTGCCGTTCTCGG CAGTTGGGCGCATTTTCGTGCAGTCATGGGGGTTTTGAGGGTGTTGTGGA GGGAGCCCCGAATGCGCGTAACATGTTCTGGTTCTACCTCGTCGCCCCTT GCGTCGTTTTCGTTCTTCGTCGATTTCGATTTGAAGTCAGTGCCTGCATC CGTTGCCGTTGCGGGTGTTCTCCTTCCTTCCCCGGCTGGTCATTCGCTCA ATGTTACCCGACACGACAGGTCCATTTTTACAGCCCGCAAAGCCGCGAAT GCAGCCAGCTTTCCCCCACAATGGAGAAGCTAGCAGAGGTGCTTCATGGC GTCGCAAAGGTTGGGGCCGTGGACTGTACCGGCAAGTCTGAGCGTTTCTG CGCTCAGCAAGGGGTCCGAGAGTTACCAGGCGTGATGCTCGTCATCGACG GCAAGGTCACACCTTTCAATGGAAGTATTGGTGAGTATTGTCATGGCCGT GCGCTGCGCGGACGATTGTTTTCGCTTCCCGTCAGGTTGACGGGGTGTAC CACGATTACTGATCATGTTTTTGCATACGTAAAGTGCGGTCGTTGCATGC AAACACTAGTCACGCGAATGTCTCGTCGCGAGTTATGGCACTTGGGTTGT TTAATAGGCCTCCAGTCATGAATTAAGTACCCTATTGGAGAGTGAATGCG AGCGCAAGAGAGTCATGTCAGCGAATACACCCTGAATATCTGTCGGTCTC TTCTGTGTTTGAGTCTCACCTCGTAGTATGTGGATTTCTGCGCTAGGGCT GCTATTGCAGGCAACACTTTCAAAACCCGAGCCACGGTTACCTGATACAC GCCTTACCCCCCCCCCCCCCCCCCTATCACAGACATGAAATCGTTGCACG AGTTTGTCCTTGGGGGCTTGCCAGCGGAGCACGTCGCCAACCTGCGCAGG AGAGACCAAGCAGACAAGTTCTTGCAGTCAGAATGCCAGGAGGGGTCAGA GTGGGGTACCTGCGGCGTTCTATTCACAGATAAATTCGAAACAACTTCGG CTCTCAAGGCCCTCTCGTTCCGTTACCGTGGCAGGGTGAGTCGGGACCGC CGGGAGGGGTTAGTGGGTTTCTGTTGACCAAGGGGGCATCGGTAAATATT CGCAGTCTCCGGCGTAAATGCAGCAGCACCCAGAATCTTTATCCGTTATG GTCCTGAGCTCCTTTTTTTCTGCGCTGCCGACAAATTTTGCACTGGTTGT TCGTTTTTTGTAGTCCCGAGCGCCTGACTCCTCTTGCAAGCGCGAAGCGC CGCTAATGGTGCGGCACATTTCCAGCGTTGCGTCAAGCAGCAAGCGCAAG AAATACATCTCACGTCCCCGTTCGACCTTCCCCCCTTCCCCTCGATTGCC CCGCCAGGTCGCCTTCGGAGAAGTTCGCGGAAAGAACGATGCGCTGGCGA ATAGTTTCCATATCTCTTCGTACCCGAGCCTCGTGTTCTTTTGCGGCGGG GATGCTGGCATTTCGTTCCGTTACGAGGTTAGTGTCCGAGGTTCGAAATA CCTTCCTGGTACCAATCACAGCCGATGGGTTTGATTTTCGGGCAGGAGAG CCTCATGCGGTCCCCATATCGAGTGGTGTTCTGTGCAGCACAGCAGTAGT TTGGCAACGTGAGGGGAATACGGAAATGGGATAATCATGCGTGAAAATGT CACATTACATTGCTCTCACGCCTTGTCGACGATCTCCTGTCTCGTTCGCC GCTCCTACGATGTCAAGCGATGTTGATTTTCGTTTTTTATTTTGTTTCCT CTCTAAAAAGACTCGGATCTCAACTGTAAAAATGTGTCGCTGCTTTTTTT ACGTTTCCGTGGCTTAACGCCACCGGCTTTTGCTGTCCTTGCGTGCAACC CTCCTCGGGACAGGGAGAGCTCAAGGCCGAGCCACTCGACACGTTCGTCA AAAGCCTCAGGGATGGCAAGAAGTGCGAGGATGCCGTTCGGAGCAACGCC CAAGCTCGCGAACAAGGTGAGGGGGCGAACTATCAAACTGCTCATTGTTT TTCGGCGGCGACGGTGGTGGGGCGAAAGCAGTCTGTCTTACTGTACGTAC TCGGGATACAGTGGACGGTCGTGTGCTTTCGTCTAGGTTTGAAATATCAT GCGAAAGCGAGTGACGAGGCGGACCACCGTCCAGAAAAATGGCCACCGAA GTGGAGATCGGCTCCGCCACCGCTACAGCGTGTAGTTGATATTTTTTCGA GGCGTGTACAGGCGAGGAGGAACTCTGAGTGCCCATGCCACAATCTCCGC CCCCCCCTTACCACCCTTCCGAGTTTATTTTGGCTCCCGTCACCCCCTTG TCCCAGCCTCTTGCCTGATGTCCATGCGTGCCCCGCTCGAACCTCCTTCC CGCACACTCGTGTCGGTCACGCCCTTTCCGTATCTTGAATCACGGCAGCC GCGGTGTTGCGACCGGACGATGATTTCTCCAAGCTACGTGTGAAGCAGTT GCGAGAATTGCTCCTAGCGTACGGCGAGGCATGCGAGGGTTGCGTTGAGA AGCGCGACTTTGAGCAGAAGCTCCGGGAAGTCGTCGTCAGCGCGCAGCCA GCCCGATGACACAAGCGAGGCGCCGGATAGCCTTCGTCAGAGACTGCAGA CGTTTCGTCTTCAGCCATGAGTGAAGTTGCAGGAGCGTAGGTTTCGCAAG GGCAAGAAAGGCTTGAAGAGGAGAAGCGGCAAAACTCCCGTGCAACGATG CGCATCCCAGTGCCACCGATTCAAAAAGTCGAAGGCAACGGGGAAAGCAC GGAGGTCCCATCGAGAGCCTTCTCACTTTTTTACGTGGATAAGGGGAATC GTTTTTGGTCTTGTCTCGAGTAATTTTTGTTGTCAAGCGCTTGCTTGAAA GAACATTGTGGCGTCTTGTGTGCTGTTTTCGCTAGCTTTGTACGAAGAGC TGATGACAGTATGTACATTCATACTTGTAGTTCACATCCGGCTTTTTTCG AAAACATGTGGACCAAGTGTCGAAAACGTGGTTTGTGTTTGCCAACCGCA AGGCGTCAAATGAATTTTGAAGTGAAGGATGAGGCCGGATTCTGGTGTGA TACTACTTTTTACGCCCCATTTTTGTTGCCGGGCACAAGCCAGCACCAAA AGTCGCGATTGAAAGGTGGCCTGAAATTCAAAATGTGATAGCGGCCACAA GTCGAAATTATGGTGGTTATATTCGAATTGGTGGCAAGTCGTCTAGCTCA GACAATCTGCCGTTTTATACGAGATTTTTTCTCGGGGAAAAAGGATCGAA GAAATAAATTGAACTTGCTCTGGAGAAGAGAGTAAAAACCGTTCGGGAGT AAAGTGTAACAGGTCACATGGTTGATCCCAACATCAAGACATACAGAAAG AAGTACTTGTAACAGTAGGAGGAGGAGGAGAATCAGTGGCAAAGTTTTGC CTTCATGACACGAAGGCCGGTTTGGATGTCACCCCTGTCATGAAAGCGTT CGTATAGTTAGTAAAATCAGATTCGGCTTCGCCGACGAGGGTAGGGACCG CGGACCCCTGCTCGCGAGAAAAAATCTCACGCATGTACCGCAGAAGGAAG GTGGGGGTAACTCCTCCTGTGTTGACCTTCCTCCTGTGTGACCCCGTCGA TGGGCCTAGCCTGTAGTTTGCAGACTAGTGTGCCAGAGAATATGGGATGA CAACACACACAGTATGTACAGGTCGTTTGTCAATATGAAAAAAAATGTGT AATTGGCTTAGCATTTGTGGTAAAAATGTCAATGCGGGTAATGAGCTTGT GAGAAGCGCCCAAGAATGGATTTGTTTTTTTGTGCGGGTCCTTGAGCTTG AGGTTAATGCGCAGTAAAATAGCACCTAAATGACCCTGCTTGAGTGTCGT ACGCCTGGTAGGGTGACGCCGCAGACGTTTTAGGCGGCAGAACGAAGTGG CCGATTGGCGCTGCACATCATATCGCCACGTTCGCACAACACGCAGGCAA GACGTATGGCGGGCTAACGATGTCAGTAACATCTGGGTGGCACTGCCGTG GATAAATGTAATTGCTTTTCGTGTTCCCTGGCTCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig603:41249..50983-

>mRNA_P-littoralis_Contig603.10.2 ID=mRNA_P-littoralis_Contig603.10.2|Name=mRNA_P-littoralis_Contig603.10.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1719bp|location=Sequence derived from alignment at P-littoralis_Contig603:41249..50983- (Pylaiella littoralis U1_48)
ATGAGGTTGTCTGTTCGACATCTCGTCTGGGTTGCTGCTCTTTTGGCCCA
GGCTCTGCTGGCGGAATGCAAAGGAAAGGACTACTATCAGACGCTTGGTC
TAAAGAAGAACGCTAAGGATGCCGCCATCAAGAAGGCTTACAGGAAGCTC
GCTCTAAAGTATCACCCTGACAAGAACCAAGAGAGGCCGGAATGGGCCAC
GAAGAAGTTCGCCGACGTTGCCGAGGCTTACGAAGTTCTGTCCGACTCGG
AGAAGCGAAGCATCTATGATCAGTTCGGCGAGGAAGGCCTGAAGCACGGG
GCCGGCGGTGGCCATGGCGGCAGCGCAGGAGGTTTCCCCCACGGCTTCGA
GTCTGGCGGGTTCCCTGGTGGACAAGGCTCCGGTCGAGGCGGTGGCCAGA
CGTTCCATTTCGAGACTGGCGACGGGCAGAGGACGTTCGAGCAGTTCTTC
AGACAGGGTACCCCTGGAGGTCATACGAAACAGAGTCGGAAGACTAGCGA
CGCGCAGAGGACGTTCGAGCAGTTCTTCAGACAGGGTACCCCTGGAGGTG
CGTTGGTGCGAAGCCGGCCTTTCCTCTGGGTCGCTCGGCACCTCAAGAAT
GCTGTGGTACGATTGAAAGAGTTTTTCCGGTGGATCAACACCGTTCTCAA
ATTCACGCAAGAGCACGAAATGAAGAAGCGGAAGCATACGAAACAGAGTC
GGGACCGAAACGACTGGCCGCAAGGGGGAGGCGGAGGCGGCAGTATGTTC
GACGACTTCTTCGGCGGGGGCGGTGGCTTCGGCAGCGGCGGTGGCTTCGG
CGGCGGCGGTGGCGGCGGAAGGAGGGCGAAACCCCCGCAGGACTTGTACC
CTAAGGGATCCAAGGTCGGCAACCTATCTGAGGCCAAGTTTCCCAAGAAG
GGCTCCGCACACGTCTGGCTGGTCCATTTTTACAGCCCGCAAAGCCGCGA
ATGCAGCCAGCTTTCCCCCACAATGGAGAAGCTAGCAGAGGTGCTTCATG
GCGTCGCAAAGGTTGGGGCCGTGGACTGTACCGGCAAGTCTGAGCGTTTC
TGCGCTCAGCAAGGGGTCCGAGAGTTACCAGGCGTGATGCTCGTCATCGA
CGGCAAGGTCACACCTTTCAATGGAAGTATTGACATGAAATCGTTGCACG
AGTTTGTCCTTGGGGGCTTGCCAGCGGAGCACGTCGCCAACCTGCGCAGG
AGAGACCAAGCAGACAAGTTCTTGCAGTCAGAATGCCAGGAGGGGTCAGA
GTGGGGTACCTGCGGCGTTCTATTCACAGATAAATTCGAAACAACTTCGG
CTCTCAAGGCCCTCTCGTTCCGTTACCGTGGCAGGGTCGCCTTCGGAGAA
GTTCGCGGAAAGAACGATGCGCTGGCGAATAGTTTCCATATCTCTTCGTA
CCCGAGCCTCGTGTTCTTTTGCGGCGGGGATGCTGGCATTTCGTTCCGTT
ACGAGGGAGAGCTCAAGGCCGAGCCACTCGACACGTTCGTCAAAAGCCTC
AGGGATGGCAAGAAGTGCGAGGATGCCGTTCGGAGCAACGCCCAAGCTCG
CGAACAAGCCGCGGTGTTGCGACCGGACGATGATTTCTCCAAGCTACGTG
TGAAGCAGTTGCGAGAATTGCTCCTAGCGTACGGCGAGGCATGCGAGGGT
TGCGTTGAGAAGCGCGACTTTGAGCAGAAGCTCCGGGAAGTCGTCGTCAG
CGCGCAGCCAGCCCGATGA
back to top