mRNA_P-littoralis_Contig603.47.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig603.47.1
Unique NamemRNA_P-littoralis_Contig603.47.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig603.47.1 vs. uniprot
Match: A0A6H5LLS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLS0_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 9.820e-31
Identity = 68/114 (59.65%), Postives = 86/114 (75.44%), Query Frame = 2 
Query:  746 AAQVDGVAKIMKGLKGDLATAVQRAMEKVEAECGAFVSSALESCPAGVSGIEEEHATVEAALRKIEARQASVTSRCSGMLTAVENNRISLAAMVDRCRVTLDNLQQAESRKLKS 1087
            ++  DGVAK+M  LKGD+   + +AM KVEAECG FV++ LESC AGVSG EE + T  AALR+++ RQAS+ SR S ML  V +N  +L+A+V+RCR  LDNLQQAESRKLKS
Sbjct:   56 SSPADGVAKLMIDLKGDITAVIDKAMGKVEAECGTFVTTVLESCSAGVSGREEHYETAAAALREMKTRQASMASRRSEMLKEVASNSSNLSAVVERCRAALDNLQQAESRKLKS 169
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BLAST of mRNA_P-littoralis_Contig603.47.1 vs. uniprot
Match: D8LD48_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD48_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 8.910e-29
Identity = 69/110 (62.73%), Postives = 81/110 (73.64%), Query Frame = 2 
Query:  758 DGVAKIMKGLKGDLATAVQRAMEKVEAECGAFVSSALESCPAGVSGIEEEHATVEAALRKIEARQASVTSRCSGMLTAVENNRISLAAMVDRCRVTLDNLQQAESRKLKS 1087
            D VAK+M  LKGD    + +AM KVEAECG FV + LESC AGVSG EE   T  AALR+IE RQAS+ SR S ML  VE+N  +L+A+V+RCR  LD+LQQAESRKLKS
Sbjct:  133 DDVAKVMIDLKGDSTAVIDKAMGKVEAECGTFVMTVLESCSAGVSGREEHDETAAAALREIETRQASLASRRSEMLKEVESNSSNLSAVVERCRAALDSLQQAESRKLKS 242
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig603.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LLS0_9PHAE9.820e-3159.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD48_ECTSI8.910e-2962.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig603contigP-littoralis_Contig603:140410..146567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1648
Hectar predicted targeting categorysignal anchor
Exons8
Cds size942
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig603.47.1prot_P-littoralis_Contig603.47.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig603 140410..144065 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791256.8060856-CDS-P-littoralis_Contig603:140409..1406451680791256.8060856-CDS-P-littoralis_Contig603:140409..140645Pylaiella littoralis U1_48CDSP-littoralis_Contig603 140410..140645 +
1680791256.816773-CDS-P-littoralis_Contig603:140686..1409631680791256.816773-CDS-P-littoralis_Contig603:140686..140963Pylaiella littoralis U1_48CDSP-littoralis_Contig603 140687..140963 +
1680791256.8324018-CDS-P-littoralis_Contig603:141226..1413371680791256.8324018-CDS-P-littoralis_Contig603:141226..141337Pylaiella littoralis U1_48CDSP-littoralis_Contig603 141227..141337 +
1680791256.842615-CDS-P-littoralis_Contig603:142041..1421171680791256.842615-CDS-P-littoralis_Contig603:142041..142117Pylaiella littoralis U1_48CDSP-littoralis_Contig603 142042..142117 +
1680791256.8513255-CDS-P-littoralis_Contig603:142133..1422871680791256.8513255-CDS-P-littoralis_Contig603:142133..142287Pylaiella littoralis U1_48CDSP-littoralis_Contig603 142134..142287 +
1680791256.8602762-CDS-P-littoralis_Contig603:143977..1440651680791256.8602762-CDS-P-littoralis_Contig603:143977..144065Pylaiella littoralis U1_48CDSP-littoralis_Contig603 143978..144065 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791256.8715978-UTR-P-littoralis_Contig603:144065..1441191680791256.8715978-UTR-P-littoralis_Contig603:144065..144119Pylaiella littoralis U1_48UTRP-littoralis_Contig603 144066..144119 +
1680791256.8806238-UTR-P-littoralis_Contig603:145161..1452551680791256.8806238-UTR-P-littoralis_Contig603:145161..145255Pylaiella littoralis U1_48UTRP-littoralis_Contig603 145162..145255 +
1680791256.8892553-UTR-P-littoralis_Contig603:146009..1465671680791256.8892553-UTR-P-littoralis_Contig603:146009..146567Pylaiella littoralis U1_48UTRP-littoralis_Contig603 146010..146567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig603.47.1

>prot_P-littoralis_Contig603.47.1 ID=prot_P-littoralis_Contig603.47.1|Name=mRNA_P-littoralis_Contig603.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=314bp
ERPFPDSKVVEKRVSTFKQNKCIICRRQSVSPPARVIQATRTSAPPYIKR
LSFTRNDPDDIGTLLAVTLGVLVVWFGHSCHGQRVGRLQGNTIADRQAGG
RERTSRRAADSASRKARKRKKNSSRLRPMTLLSKGAAQRGIRRGGGGGSS
SASSAAGAARKTTPRRQHTKQKVASARSSPRLHLTQKRTPDGRGRGGGRR
FASAARHQGAQSKRGGAAATGTRHTNAGSRGGSAQRQRQWSYRSQNQEGR
AGGRRCEDHERPEGRSSDGCAEGHGKGGGRVRRFRVIGAGKLPGRRFRDR
GRTRNGGGGPAQD*
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mRNA from alignment at P-littoralis_Contig603:140410..146567+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig603.47.1 ID=mRNA_P-littoralis_Contig603.47.1|Name=mRNA_P-littoralis_Contig603.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6158bp|location=Sequence derived from alignment at P-littoralis_Contig603:140410..146567+ (Pylaiella littoralis U1_48)
GAACGACCCTTCCCAGATTCGAAGGTTGTTGAAAAGCGCGTGTCTACCTT
CAAACAGAACAAATGTATCATTTGCAGGAGGCAAAGTGTGTCTCCGCCTG
CACGTGTCATACAGGCAACGCGCACGAGCGCCCCTCCGTATATAAAACGC
CTCAGTTTTACCCGCAATGATCCCGATGATATCGGCACGTTGCTCGCCGT
CACCCTTGGCGTTCTTGTTGTTTGGTTTGGTCACAGGTGTTGTGATACTC
CCGTAGAGCTGAGCTGTACTGTTCTAGCTGCCACGGTCAACGGGTTGGAC
GTCTTCAGGGCAACACAATCGCAGACAGACAGGCAGGCGGACGGGAACGG
ACAAGCAGACGGGCGGCAGACTCAGCAAGCAGGAAAGCAAGAAAACGAAA
AAAAAACAGTTCGAGGTTGCGTCCGATGACGCTGCTCTCCAAGGGTGCTG
CTCAGCGAGGGATCCGCCGTGGCGGCGGCGGCGGCAGCAGTTCGGCGTCG
TCGGCGGCTGGTGCCGCAAGAAAAACCACCCCCCGCAGGCAGCACACCAA
GCAGGTGCGAAAGGACTGCGTGCGGGCGACGTTGCGGTCCTCCTCCGTGG
TTGTTTTTTGTTGTTGCACTGCTGTCATCTTGCAAGATCGTCTCGTTTTA
CTTCATTTCCTTTATTTCTTTATTCCTCGCTTTTATTTGACAGACAGAGC
GGCGTACCTCACACACCTCTGAACGCTGTGCTGACTCCTCCGAGTCATTT
GCCCCCCCCCCCCTTGAAACGCCGTGCCTATCCTGTCAAATATCATCTCC
GTGATAAATAATCGCAGAAGGTTGCCAGCGCTCGGTCTTCCCCGCGTCTC
CATCTCACCCAGAAACGAACGCCGGATGGACGCGGCAGAGGGGgcGGGAG
GCGGTTCGCCTCCGCCGCCCGCCACCAGGCAAGCGCGATCAATCGTCCAC
AAAGTTATGCTGCAGTCCCTGTCGGTGATGGTGGACGAACACCTGTTTCA
GCGCGGTGTACACACGCACTACCCGCATATGCACTTACTTGCCTTGGCCG
CCTGCACACACGAAACAAGCCTTGGTGTTTCCTTGCTGCACATACGTATG
CGGTGCGTTTGATCTGAACCGGCCATGCTTCTCTGCTGTTTTTGACATGA
TACAACGAAGCGGCGGCGGAAAAATTATTACTCCAAGTTGTTTTTGATTT
TTTCCATTTTTATAGTCAGCATAAACGGGACGGCTGCGCGGAAGAGCACA
ATATATATATTTTTCTTTCAACCGAAGAAGCCCACACCGCCCGCATCATC
ATCACCACCACCACCACCTTCTCCACCACCACCAAAGTATTGTTGTGCCT
TCTTGGTGGTCCTCTTGAGACTGGTCGGTCCCATGGATTTGCGCGCACGA
ATCCGTTTGTGTGCTGGTGGCGCCTCCAACTCGCTCAGACAACGCACTGC
GAAGAATAAACATACCTATTCTATGATAAAAGATCACAGACCATTCAAAC
AGTGTATTTCCCGATCGAAAGCGCTCATGCGTTATTATCATGCGAACCTT
TCATGTCTTCGTAGTAACATGCAGAGAGGGCGAAAGCGTTCGCGTATTTT
CTCACACAACTCCGCTGCCCATACACCAGCAGGGGGCGCAATCGAAGAGA
GGAGGCGCCGCCGCGACAGGCACACGCCACACCAACGCCGGCTCCCGTGG
CGGCAGCGGCAGCGGCAGCGGCAGCGCAGCGGCAGCGGCAGTGGTCGTAC
CGCAGCCAAAACCAAGAAGGCCGCGCAGGTGGACGGCGTTGCGAAGATCA
TGAAAGGCCTGAAGGGCGATCTAGCGACGGCTGTGCAGAGGGCCATGGAA
AAGGTGGAGGCAGAGTGCGGCGCTTTCGGTGAGCTTGGGGGTGGGCGAAA
CTTTACCGTAGGGTCGCCTAAGAAGTTACTCACGGGAACCCCCTGGACGG
TTTGTTTTTGTTCAGCGTTCTTCTCAGCAGACGGGGTTTGGGTGCCGGAA
AAAGACAAAAAAGTGTTGACGTTGAAATCGTGGAACCACCTCGTCGAGAG
CTTTTCGAAAACGCAGATAGACATAATATCGTTTGGTAATATCGTTTGGT
GTTTGCATGACACCCTCGTCTTCATGGAGCAATGGAGCATCAGAAATCGG
TTCAAGGGGCCCCGTGGTATCTCATGCGATCTACGGCACCTACCACTTGG
GAGTGGTATGATGCGGTTTTAGCTTTTGCTGGGCGCCATCTGTTTGTTGT
CGTTGTTGTTGTTGTTGTTGCTGTTGTTGTTGTTAGGTGCCGTGTGTTTG
TTTATTTCACGTGCCTGCTGATCGTTCGCCTCGTCCTGTAGCGCCCAGCC
ACCAACCACAGCACGCCGTCCAGCCTATGGGAACGCCCGACAAGCAGCGT
TCAAGCGGGCCGCCCGATGTAATTGATCGTGGCGTTCTTTTGAGCTTCGT
TTCAAGCGCCGGCGCTAGACATGCAGTACTGCTGTTGTATTGGCAAAAGC
CCATTCATCTGTCGTGAACATTTCAGAGCACACAGTGGTCGTTGTTCGCA
ACCTTGCCTTTCATACGTAGCGCAATGCCGCTGATATGAGGCGGTGCGAC
TACATGCGATGGGTTGGACACAGACGCTGGACTGCTCAGCTGCTCCGTTT
TTAAAACTACTCTTGAGGTTCGTAGGAAAAATACTAGAGCGCAGAAGGAA
GTGGGAAATTTTGAAATGTTTCCGTTCAAGAATGGATTGGTTTGCCGATG
TCCTCGTGACAGCAGTAAAAAGCATGTGCCGATGCACCACTCGTCTCCAC
GACCAACGATAAACATGCATCAGAGGTGTTCACACGCAGCAACAAACGTG
CAGCATGCCCCAGACCAGGGACACTGGTTCCAACATATTTTCTTCTTCTT
TTTTTCTAAATTTGTTTCGTGAAGAGAGAGAGAGACCCGTCCCTGACAGC
CGTTTGTTGGAGTGTACCCTTGATGAAGGTCACCTATCTCATCGACCATA
TGGGTCGTCAACGTGGGATCGTATTCACGTGCAGTTAGTTTTCAACGTGC
ACATATACTTCGCAAGTACTGTACACACAAAATTCGCCCCGAACATACCG
ACGGGGAAACAGGGGTGGTCGAGCCCTTTTCGCAAGTACATATTCTCGTC
TAGAGAGAGGCGAACACACTGATGTGTTGTGTCATAGGAAAAGCAGAAAG
TAGTTCGTATTAATTACGACAAGCGGCGTGCAGAAGGAAGGCCGAGAAAA
TACTTCGTTTAAAAAATCTATTCTGTTTTGACCTTCCTTCCTCCTCCCGT
GTGACCGACCGCGGCTGGAACGCCCAACGTACATCAAAACGTTTAGACAG
GCGTCAAGAATGGCAAAAAGCTGGGGCGGCAGCAAACACACAGACAGACA
AACAGACAGGCAGACAGACATACTTCGTAGGTTTCGCGGTTCTGGCCTCA
CTCAAGGCAACATGAACTGGCATTTTGTACACCGTTATCTGACCGACCAG
CCTCTCACTTTTCACGAGCTCAACCCCCCATGTGGCGCCGCGTGACGCGG
GCGTGATCGTGGCGGCAGTGTCATCGGCGCTGGAAAGCTGCCCGGCCGGC
GTTTCCGGGATCGAGGAAGAACACGCAACGGTGGAGGCGGCCCTGCGCAA
GATTGAGGCCAGACAGGCGTCCGTCACTTCGCGGTGCTCGGGGATGCTTA
CCGCTGTCGAGTAAGCATGGCCTGCTCTCTCGAGTCTTCGTGAACCTCCT
CTGTCTTTGGTTGGATGCACTCTGATGCCTCTTCGGCTGCTGGAAATTCT
AGAGCTGTCAAATGTCTGGATGATGCACCCGTGAGTGAGCCTGGGCAGCT
CGCAGCTCTCAGAGCAAGCCCACCGATCGATGACACGTCCGCGCGAACCC
TTCTTGCGTGTCGCGTTTTGTTTTTTAAATGCGGCGGATACATACGTCTA
CTATGTGCATGGCGTCACATCTTGTAGGGGAAAGCGGGTAGCCCGGCTTC
ACCGGTCTCTTGACTTTCCGGTGCTGTGCAGGGTTTGACTGGGGTCGAAT
GAGTGCCGCAAACAGAGATTCAGATGTTTGTGAGGCGCCGCCGCCGTAGA
GAGATTTCGTGATTTTTATTGAGTCTCGTGTTCGTAGTATCTGATGGTGT
TACCCCATGAAATATTCATTTGGTATAATAGTATATGGAGTATCCATTCA
CCCCGGTTGGTGCGCCCAACTTATGTTACATGTACCGAACGGGATTTGCT
GGCGCTCCAAATAAATGGGATGGCAACACACACACACACAAACGCGCGTT
CGTGTAGATTCGCGATCCTCTCTGTGTACTCCCCCCCCCCCCCCATCTTA
AATCTGAGGCCTCGGTCAGTGACCCGCTCATACGTCTCAGTGAAATTGTT
GTACGCTTTATCCATCGCGCTCGACAAACTCCTCCGTGTGTATTTCAGTA
TCTACCGTTGCTTTATTCGTGGGTTGACCCTGAAAACCCTCAGTCGCTCA
CGCGCCACAGCACTACAAAGCTCTGCACGGTGAATCAATCGCGTTCAAGC
TCCATCGTTCTTCGACCGCTGTTGCACACTTTGTCTGCAGCTGCATGAGC
TAAATCTGCCAGCACTCCAAAAAGCCCGAGTTCAGGTACTGTAGCTCCAA
CCATCTCGCTTGCGTCTTCACGCTGTGTGGAGGGGTTAGGATTTGTGTCC
ACCATGATGATGTACTTCCTTCGCGTGGATTTGCCGCTGCTTCCAAACGT
AGGAACAATCGAATCAGCCTGGCGGCAATGGTGGACCGCTGCAGGGTGAC
CCTGGACAACCTGCAGCAGGCGGAGAGCCGGAAGCTCAAGAGCAGCGTAA
GCACGTAATCAGTAGACACTTCTTCGGCCAACTGTATGGCTCGAACTCAG
GGTAACTCGGACAATTTCGGATGGTTGCTTATTCGGCCAGGTTTCGGTTC
GAGCTCAGGGCTACTACTACAGACAATTTCGTATGATAGATCAATCGACC
AAGTTAAGGTTCGAGCTAAGGATTTCGGATGCTCGATCAGTCGACCAGTG
TTAACGGATGGTTGAAAAATAACTCAACCAAGATTGGGTTCGATCTCAGA
CTAGTGCCCATGGCCAAACGTATTTCCCTTTTTAAAAATTGTTGTTGGCC
CTGGGCTCGAACTACCCTTACCTTGGTCCGAAAACGTCAAATTCCTCGAC
AGGATCGATCGATTCGCCTTTAGTCCCGACCCTCTTAAAGGAGCCTGAAT
GGTTACGTTTGTGTGTGTTGTCGGCCCATCTGTTCTGGATTCCAGTCTAC
ACCTTTCGCTATTTAATATTCTTGAGTGTAGGTCAAGGCACATCAGCCGG
GGTCATACAGGAGGAAGGTCAACCGGATTTCGTTTTTTCGAAACCATTCA
ATCTAGCGCAAAATTGTGGGTTCGACCGGTGCGCCCGCAATGTGTGTGAT
ACCACGTGTCATGGTGCTCATGACTCCTCAAGTTCAGGACAATTTGGACG
GCGTGACTTTTTATGCTGCAATTGTTTCATCCGAGTTTCTGTCCCTTTCG
CTTAAACGGTATCCTGCCCTCAACACCGATGCGCCCATCGTTTACCACAG
GGTTTAGTCCCCCCGGTGCGGTCACATTCTATCGCTTGTTCTGCACGGAA
TGCCACCAGAACTTCTGCGCGCAGGAGCAGATATCACGCAACCGCATCAA
TCAGTCTCTCCCAGCTTTTTGAATTGTCGACTTGCCTGACGCCGCCTTCG
GATTTCCATGCTCGATATTTGCCGTGCTCACAGCTAGACCGAGCCACCGG
CTTGAAGAGCTAGCTGATTGGACACGGCCGCAGCAGGCTGGCTTACGTGA
AGATAGGCTTGGAATAACAACGCGGCCAGGGTTTATTTTCTGTGCACTGC
AGAGCGGTGCGGTGCGTTGCGGTGCGTCACGAAGGCTGGCGGTAGAGCTA
GTATTCGTCCGTTCGATATCGACACTCGCACGCCGCATGGAAGCATCGTA
GCATGTGACTTGCAAGCGCCGGGAGGCGCGTTGGTGAGGCGGGTCTCGAT
CGTTCGGCCGGAAAGAAAATGGAGAAGGCTGTGCTCTGTGCCTGCGCGCA
GCTTGGACCTGGTGTGCAGTCATGCCGTATTTTTTTTCATTCGTTGACTT
CTCATTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig603:140410..146567+

>mRNA_P-littoralis_Contig603.47.1 ID=mRNA_P-littoralis_Contig603.47.1|Name=mRNA_P-littoralis_Contig603.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=942bp|location=Sequence derived from alignment at P-littoralis_Contig603:140410..146567+ (Pylaiella littoralis U1_48)
GAACGACCCTTCCCAGATTCGAAGGTTGTTGAAAAGCGCGTGTCTACCTT
CAAACAGAACAAATGTATCATTTGCAGGAGGCAAAGTGTGTCTCCGCCTG
CACGTGTCATACAGGCAACGCGCACGAGCGCCCCTCCGTATATAAAACGC
CTCAGTTTTACCCGCAATGATCCCGATGATATCGGCACGTTGCTCGCCGT
CACCCTTGGCGTTCTTGTTGTTTGGTTTGGTCACAGCTGCCACGGTCAAC
GGGTTGGACGTCTTCAGGGCAACACAATCGCAGACAGACAGGCAGGCGGA
CGGGAACGGACAAGCAGACGGGCGGCAGACTCAGCAAGCAGGAAAGCAAG
AAAACGAAAAAAAAACAGTTCGAGGTTGCGTCCGATGACGCTGCTCTCCA
AGGGTGCTGCTCAGCGAGGGATCCGCCGTGGCGGCGGCGGCGGCAGCAGT
TCGGCGTCGTCGGCGGCTGGTGCCGCAAGAAAAACCACCCCCCGCAGGCA
GCACACCAAGCAGAAGGTTGCCAGCGCTCGGTCTTCCCCGCGTCTCCATC
TCACCCAGAAACGAACGCCGGATGGACGCGGCAGAGGGGgcGGGAGGCGG
TTCGCCTCCGCCGCCCGCCACCAGGGGGCGCAATCGAAGAGAGGAGGCGC
CGCCGCGACAGGCACACGCCACACCAACGCCGGCTCCCGTGGCGGCAGCG
CGCAGCGGCAGCGGCAGTGGTCGTACCGCAGCCAAAACCAAGAAGGCCGC
GCAGGTGGACGGCGTTGCGAAGATCATGAAAGGCCTGAAGGGCGATCTAG
CGACGGCTGTGCAGAGGGCCATGGAAAAGGTGGAGGCAGAGTGCGGCGCT
TTCGTGTCATCGGCGCTGGAAAGCTGCCCGGCCGGCGTTTCCGGGATCGA
GGAAGAACACGCAACGGTGGAGGCGGCCCTGCGCAAGATTGA
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