mRNA_P-littoralis_Contig116.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig116.45.1
Unique NamemRNA_P-littoralis_Contig116.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig116.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig116contigP-littoralis_Contig116:165562..166108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size547
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789477.960653-UTR-P-littoralis_Contig116:165561..1657601680789477.960653-UTR-P-littoralis_Contig116:165561..165760Pylaiella littoralis U1_48UTRP-littoralis_Contig116 165562..165760 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789477.9719498-CDS-P-littoralis_Contig116:165760..1661081680789477.9719498-CDS-P-littoralis_Contig116:165760..166108Pylaiella littoralis U1_48CDSP-littoralis_Contig116 165761..166108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig116.45.1prot_P-littoralis_Contig116.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig116 165761..166108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig116.45.1

>prot_P-littoralis_Contig116.45.1 ID=prot_P-littoralis_Contig116.45.1|Name=mRNA_P-littoralis_Contig116.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
MINTSKDRHRGGTKTEGRYTQRKQAAKQRGSREKKRDKETHPVGAGGNHV
YKMVRGGTAAADGAGTGASGAADTREPSSTWTTGPPQDRGKCTVLPSPST
GPTANGKNTQECRAKK
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mRNA from alignment at P-littoralis_Contig116:165562..166108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig116.45.1 ID=mRNA_P-littoralis_Contig116.45.1|Name=mRNA_P-littoralis_Contig116.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=547bp|location=Sequence derived from alignment at P-littoralis_Contig116:165562..166108+ (Pylaiella littoralis U1_48)
GTGGGGCACCATCTGTGGTGGTGGTGGCTAAAGTACAAAAAACATGCAGA
AAAATACAGAAAATAATAGGTCGAAAGAAAAAAACAAAAATTGGAAACAG
CACCAAGACAAACTTCCATATACCTTCTACTTCGTATACCGAACCAGAGC
ACAGCGCTAGGACAGACCAAGGCAAACCAGGGCACATGGTGCAGTAAGTA
TGATCAATACAAGTAAAGACAGACACAGGGGGGGCACAAAGACTGAGGGA
AGGTACACACAACGCAAACAGGCAGCCAAACAAAGAGGAAGCAGGGAAAA
GAAAAGAGACAAAGAGACACATCCGGTAGGGGCCGGGGGTAATCACGTGT
ACAAAATGGTTCGAGGGGGAACGGCGGCGGCGGACGGAGCCGGAACAGGA
GCGTCAGGAGCAGCGGACACAAGGGAGCCCTCCTCCACTTGGACCACCGG
TCCGCCCCAGGACCGTGGGAAGTGTACTGTTCTCCCCTCGCCTTCCACTG
GGCCCACAGCAAACGGGAAAAATACACAAGAGTGCAGAGCAAAAAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig116:165562..166108+

>mRNA_P-littoralis_Contig116.45.1 ID=mRNA_P-littoralis_Contig116.45.1|Name=mRNA_P-littoralis_Contig116.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig116:165562..166108+ (Pylaiella littoralis U1_48)
ATGATCAATACAAGTAAAGACAGACACAGGGGGGGCACAAAGACTGAGGG
AAGGTACACACAACGCAAACAGGCAGCCAAACAAAGAGGAAGCAGGGAAA
AGAAAAGAGACAAAGAGACACATCCGGTAGGGGCCGGGGGTAATCACGTG
TACAAAATGGTTCGAGGGGGAACGGCGGCGGCGGACGGAGCCGGAACAGG
AGCGTCAGGAGCAGCGGACACAAGGGAGCCCTCCTCCACTTGGACCACCG
GTCCGCCCCAGGACCGTGGGAAGTGTACTGTTCTCCCCTCGCCTTCCACT
GGGCCCACAGCAAACGGGAAAAATACACAAGAGTGCAGAGCAAAAAAG
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