mRNA_P-littoralis_Contig601.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig601.26.1
Unique NamemRNA_P-littoralis_Contig601.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig601.26.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 421 bits (1081), Expect = 1.160e-142
Identity = 195/253 (77.08%), Postives = 223/253 (88.14%), Query Frame = 2
Query:  236 QTKVMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYD 994
            Q KV+ACLQ+LARGN F DIYHMSFIS+ TA ATFH F R+FAREMY EHI+LPTGDYQ KVM++Y+RLGF+GA GSTDVTH+ WG CPYNQARS+TGKEGYPT+AYQVTVDHTKR LAVTPGFTG+TNDK+IIR+D AVT+IR DPIY+E+ + +Y+ADG   Q KGCYLLVDNGYHKW TL+ P+KY I++ D  FS RLES RKDVEC+FGIVKGRFRI KL+IPYHK+EDIDNVFFTCCILHNMLHSYD
Sbjct:  156 QLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYD 408          
BLAST of mRNA_P-littoralis_Contig601.26.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 399 bits (1024), Expect = 4.050e-135
Identity = 183/252 (72.62%), Postives = 217/252 (86.11%), Query Frame = 2
Query:  239 TKVMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYD 994
            T+V+ACLQ+L+RGNVF DIYHMSFIS  T  +TFH FC++FA E+Y E++YLPTG+   KVM +Y+R+GF GA+GSTDVTH+ WG CPYNQAR +TGKEG PT+A+QVTVDH+ R LAVT GFTGATNDKTIIR+DKAVTRIRTDP+YTE+ Y LY  DG   +EKGCYLLVDNGYHKW TL+ P+K  I++GD +FS RLES+RKDVECYFGI+KGRFRINKLAI +HK+E IDNVFFTCCILHNMLHS+D
Sbjct:   82 TQVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFD 333          
BLAST of mRNA_P-littoralis_Contig601.26.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 399 bits (1024), Expect = 8.000e-134
Identity = 183/253 (72.33%), Postives = 217/253 (85.77%), Query Frame = 2
Query:  236 QTKVMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYD 994
            + KV+ACLQ+L+RGNVF DIYHMSFIS  T  +TFH FC++FA E+Y E++YLPTG+   KVM +Y+R+GF GA+GSTDVTH+ WG CPYNQAR +TGKEG PT+A+QVTVDH+ R LAVT GFTGATNDKTIIR+DKAVTRIRTDP+YTE+ Y LY  DG   +EKGCYLLVDNGYHKW TL+ P+K  I++GD +FS RLES+RKDVECYFGI+KGRFRINKLAI +HK+E IDNVFFTCCILHNMLHS+D
Sbjct:  172 ELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFD 424          
BLAST of mRNA_P-littoralis_Contig601.26.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 337 bits (865), Expect = 2.910e-111
Identity = 159/254 (62.60%), Postives = 196/254 (77.17%), Query Frame = 2
Query:  242 KVMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPT---GDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYD 994
            KV+A L +L RGN F  IY +S++S  T Q  FH FC+HFAREMY EHIYLP+   G+    VM +Y+RLGF+GA+GS DVTH+ W  CPYN ARS+TGKEG PT+ YQVTV+H  RA+AVT GFT +TNDKT + +D  V +IRTD  YTE+T+++Y+ DG T   KGCYLLVDNGYHKW  LM PTKY + + D +FS RLES RKDVEC+FGI+KG FRI K+A+ YH++E IDNVFFTCCILHNMLH++D
Sbjct:   98 KVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELD-HVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFD 350          
BLAST of mRNA_P-littoralis_Contig601.26.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 336 bits (862), Expect = 6.470e-110
Identity = 158/253 (62.45%), Postives = 194/253 (76.68%), Query Frame = 2
Query:  242 KVMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQT--KVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYD 994
            KV+ACL +L RGNVF  IY++S++S PT Q  FH FC HFA EMY EHI+LP+ +     +VM +YE+LGF GA+GSTDVTH+ W  CPYNQ RS+TGKEG PT+ YQVTV+H  R LAVT GFTG+TNDKTII  D+AV RIRTD  Y E+ + ++  DG T   KGCYL+VDNGYHKW  L+ P+KY + + D +FS RLES RKDVEC+FGI+K RFRI KLA+ Y K+E +D VFFTCCILHNMLH++D
Sbjct:  127 KVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHD 379          
BLAST of mRNA_P-littoralis_Contig601.26.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 330 bits (845), Expect = 1.410e-107
Identity = 165/281 (58.72%), Postives = 198/281 (70.46%), Query Frame = 2
Query:  242 KVMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQT--KVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYT----------------------------ERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYD 994
            KV+A L +L RGN F  IY MS++S  T Q  FH FCRHFAREMY E I+LPT +      VM +Y+RLGFTGA+GS DVTH+AW  CPYNQARS+TGKEG+PTIAYQVTVDH  RA+AVT GFTG+TNDKTI+ +D AV +I TD  YT                            E+T+++Y+ DG T   KGCYLLVDNGYHKW  L+ P+KY + + D +FS RLES RKDVEC+FGI+KGRFRI KLA+ Y  +E IDNVFFTC ILHNMLH++D
Sbjct:   85 KVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFD 365          
BLAST of mRNA_P-littoralis_Contig601.26.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 312 bits (799), Expect = 1.370e-101
Identity = 151/245 (61.63%), Postives = 178/245 (72.65%), Query Frame = 2
Query:  260 QVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYD 994
            QVL +GN F D+  +S +S   AQ TFH FCRHFA EM+ EHIYLPTG Y  +VM  + +LG+TGA GSTDVTH+ W  CP+   RSFTGKEG+PTIAY VTVDH  R LAVT GFTGATNDKTIIR+D  V +IRT   YTER Y L  A+G  R  +GC+L+VDNGYH+W TL+AP+KY     DT FS  LES RKDV C        FRI KL +PYHK+E +DN+FFTCCILHNMLH++D
Sbjct:   42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGC--------FRILKLRMPYHKREYVDNIFFTCCILHNMLHTFD 278          
BLAST of mRNA_P-littoralis_Contig601.26.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 300 bits (768), Expect = 1.830e-97
Identity = 148/253 (58.50%), Postives = 182/253 (71.94%), Query Frame = 2
Query:  242 KVMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQT--KVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYD 994
            +V+A L +L +GN F  I+ MS++S  T Q  FH FCR FAREMY EHI+LP  +      VM +Y+RLG                 CPYNQARS+TGK+ +PTIAYQVTVDH  RA+AVT GFTG+TNDKTI+ +D AV +IRTD  YTE+T++LY+ DG T   KGCY L DNGYHKW  L+ P+KY + + D +FS RLES RKDVEC+FGI+KGRFRI KLA+ Y  +E IDNVFFTCCILHNMLH++D
Sbjct:   20 QVLAWLTILGKGNCFASIFQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFD 255          
BLAST of mRNA_P-littoralis_Contig601.26.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 299 bits (765), Expect = 1.940e-96
Identity = 148/257 (57.59%), Postives = 179/257 (69.65%), Query Frame = 2
Query:  218 KSQAVNQTKVMACLQVLARGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHS 988
            +  A N+  +   L+VL +GN F D+  +S +S   AQA FH FCRH A EM+ EHIYLPTG Y  +VM  + +LG TGA GSTDVTH+    CP+   RSFTGKEG+PTIAY+VTVDH  RALAVT GF G TNDKT IR+D  V +IRT+  YTER Y L   +G  R  +GC+L+VDNGY++ N             DT FS  LES RKDVEC+FGI+KGRFRI KL +PYHK+E IDN+FFTCCILHNMLH+
Sbjct:  124 EKDAANREGIPLELKVLGKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYESNE------------DTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHT 368          
BLAST of mRNA_P-littoralis_Contig601.26.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 1.330e-93
Identity = 135/210 (64.29%), Postives = 167/210 (79.52%), Query Frame = 2
Query:  371 MYHEHIYLPTGDYQTK--VMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYD 994
            MY EHI+LPT +      V+ +Y+RLGFTGA+GS DVTH+AW  CPYNQARS+TGKEG+PTI YQVTVDH  RA+AVT GFTG+TNDKT + +D AV +IRTD  YTE+T+++Y+ DG T   KGCY+LVDNGYHKW  L+ P+KY + + D +FS RLES RKDVEC+FGI+KGR RI  LA+ +  +E IDNVFFTCCILHNMLH++D
Sbjct:    1 MYDEHIHLPTEESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFD 210          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig601.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAU4_9PHAE1.160e-14277.08Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE4.050e-13572.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE8.000e-13472.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE2.910e-11162.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE6.470e-11062.45Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE1.410e-10758.72DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K796_9PHAE1.370e-10161.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX7_9PHAE1.830e-9758.50DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KSI7_9PHAE1.940e-9657.59DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
D7FSK2_ECTSI1.330e-9364.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig601contigP-littoralis_Contig601:100090..102540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size994
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.07e-95
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size798
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791255.9714262-UTR-P-littoralis_Contig601:100089..1001731680791255.9714262-UTR-P-littoralis_Contig601:100089..100173Pylaiella littoralis U1_48UTRP-littoralis_Contig601 100090..100173 +
1680791255.9819856-UTR-P-littoralis_Contig601:100814..1009261680791255.9819856-UTR-P-littoralis_Contig601:100814..100926Pylaiella littoralis U1_48UTRP-littoralis_Contig601 100815..100926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791255.9939706-CDS-P-littoralis_Contig601:100926..1009741680791255.9939706-CDS-P-littoralis_Contig601:100926..100974Pylaiella littoralis U1_48CDSP-littoralis_Contig601 100927..100974 +
1680791256.0041022-CDS-P-littoralis_Contig601:101206..1017341680791256.0041022-CDS-P-littoralis_Contig601:101206..101734Pylaiella littoralis U1_48CDSP-littoralis_Contig601 101207..101734 +
1680791256.0130482-CDS-P-littoralis_Contig601:102318..1025401680791256.0130482-CDS-P-littoralis_Contig601:102318..102540Pylaiella littoralis U1_48CDSP-littoralis_Contig601 102319..102540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig601.26.1prot_P-littoralis_Contig601.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig601 100927..102540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig601.26.1

>prot_P-littoralis_Contig601.26.1 ID=prot_P-littoralis_Contig601.26.1|Name=mRNA_P-littoralis_Contig601.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=266bp
MVEGSFQKSQAVNQTKVMACLQVLARGNVFRDIYHMSFISVPTAQATFHS
FCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGC
CPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFD
KAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPT
KYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDN
VFFTCCILHNMLHSYD
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mRNA from alignment at P-littoralis_Contig601:100090..102540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig601.26.1 ID=mRNA_P-littoralis_Contig601.26.1|Name=mRNA_P-littoralis_Contig601.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2451bp|location=Sequence derived from alignment at P-littoralis_Contig601:100090..102540+ (Pylaiella littoralis U1_48)
GTGGCGCTGGTGAAGGAGAGGGACTGGTTTCCAACGGGGAAGAAGGACGT AGCAGGTCGTGCAAGCATCCCAGTGGAGCTGAAGGTCAGCCCTTATTTTC TATCATGATGTTTAAAACTAAGATGATTTTATACAGCAGTAGATGTTCCC GACTTTTGGTGGTATATGCTGCGAAGTACTTCGTTATACGAAGAACACGA AGAAAAACACACAGCAGTACTGCTTGCCTGCCCATGCTTCTCTCGGTGTA TTGAAGCGTTTTCAAGCATCCCAGTGGAGCTGAATGTCAGCCCTCGTTTC CTATCATGTTGTAGTTCCAAACGAAGATGATTTTAAGGCCACCGGGGAAT AGGGTGCAAACAGCTCGCAGACTTTCGACAAACCCCTGATTATTCTGGGT TTTGAAAGTCTATCTTTTATACATACGAATCTACCACCTCAGGATGCTCC CGGAGGCAGTCGCTGTGAGCAATAAGTAGTGTCTTCGATCCAAGTCCTTG CGACATGCTACAGATTCACCGCTTGCGACTTTTGGAACGAGCCCTCCATC ATCTAGTTCTGCGAGCCACGATGCGTGGTTCGGATGCTGCTGTAGCAGCC ATATTTTTGAACGCTTCCAGCACACAGCACCCGAATAAAACGCAAAGCCA ACGTGAGTACCAGCGAACGCTCATTCAGCACAATGATCTCCTCACGTACC TTGCCCATCGCCGTGATTGATGAAGTCCGTAGGTACTCACGTATGCCCCG TATTTTCGGGTGCTGTATGCTGGAAGCGTTCAAAAATACGGCTGCTACAG CAGCATCCGAACCACGCCTCAAGGCTCGCAGAACTAGATGGTGGAGGGCT CGTTCCAAAAGTCGCAAGCGGTGAATCAAACGAAGGTGATCATGCAATTT GCTTGGCCATCAAGAACGACGAGGTCACATGTGGTTTAATTTGTTTTCAA CAGCGCGGGTGTGCGTCGCAATATTAAGGGCAGTGTTCCTGCGTAATCTT TGTGACACGTTTCATGTGTTCGGTATTTGAGCGATTCCCGATATATAGCC CGGAAGCAGTTTCCCCTGATTTTCCGCACACTTCCCACGTTGTCCGTTTA TTTGTACTCCTGTTTAGGTCATGGCTTGCCTGCAGGTGCTGGCCAGGGGG AACGTCTTTCGAGACATCTACCACATGTCTTTCATTAGCGTGCCGACAGC TCAGGCGACCTTCCACAGCTTCTGCAGGCACTTCGCCAGAGAGATGTACC ACGAACACATCTATCTACCGACAGGAGATTATCAGACGAAGGTCATGAGC GAGTACGAGCGCCTTGGCTTCACAGGCGCGATCGGGTCTACGGATGTCAC CCACCTCGCGTGGGGCTGTTGCCCCTACAACCAAGCCCGTTCTTTCACAG GAAAAGAAGGGTATCCTACCATCGCATATCAAGTGACCGTCGATCACACT AAACGCGCGTTGGCAGTGACACCGGGCTTCACGGGCGCGACGAATGACAA GACGATCATCCGTTTCGACAAAGCTGTCACCCGGATCCGGACCGACCCGA TCTACACCGAGCGCACGTACAACCTCTACGACGCGGACGGGGCGACACGC CAGGAGAAGGGGTGCTACTTGCTGGTGGACAATGGGTATCACAAGGTTGG TTGTTGCCGAAAGAGAAGGTTTGATTTTGTTGTGCCACCTTATACGTTGG AAGAACAAGCTACCTTGGCCCTTTTGTGACTGAGCCACGAAAAAGATCCC TTTGCAAGTCCTATGTCTTCGATTCGCTTTTTCGCGAAAGGAAAGCTGGT ACGCGACGCGTAGCTCCGAAGCATTCGTGAAGATGAACTTTTGATCTTTC ACGCTCGTATGCGAGCCTGTGCCTGCATATTTCGGGCATCTTTCGGGCAG TGGTGGTATGCCGAGCTGTGTGTAGCCTCTGTCGTTTTCGAGTGGGGATA ATCTTTGTGCAAGGCGGTGTGTTGGTGTGGATGTATGTATGGATAATCAG GGTCGGGTTCGCAGAGGAACGTGCCGCCCTAGGATTAAGGTTCCGGGCCA AAGTCCGTCGCTAAACCCCTGTCACCAACAGGTTAACTCGATAGTTAATG TGCGTTCATCATCGCCAGCATAAACGGGCGGGCGCGTTCGTGGAACGTAT CCAAGACCGTATTCCATCCGCCAACAGCCTCCAAGCCCCCCCTTCCTCCC CTCCCCCCCCACCGCCGTCGTCTTCGCAGTGGAACACTCTCATGGCCCCA ACAAAGTACGCAATAGAGAAGGGCGATACGGTGTTCTCCAACAGACTGGA GAGCTCGCGCAAGGATGTGGAGTGCTATTTTGGCATCGTGAAAGGCCGCT TCCGCATCAACAAGCTAGCGATCCCGTACCACAAGAAGGAAGACATCGAC AACGTTTTCTTCACCTGCTGCATCCTCCACAACATGCTGCACAGCTACGA C
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Coding sequence (CDS) from alignment at P-littoralis_Contig601:100090..102540+

>mRNA_P-littoralis_Contig601.26.1 ID=mRNA_P-littoralis_Contig601.26.1|Name=mRNA_P-littoralis_Contig601.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=798bp|location=Sequence derived from alignment at P-littoralis_Contig601:100090..102540+ (Pylaiella littoralis U1_48)
ATGGTGGAGGGCTCGTTCCAAAAGTCGCAAGCGGTGAATCAAACGAAGGT
CATGGCTTGCCTGCAGGTGCTGGCCAGGGGGAACGTCTTTCGAGACATCT
ACCACATGTCTTTCATTAGCGTGCCGACAGCTCAGGCGACCTTCCACAGC
TTCTGCAGGCACTTCGCCAGAGAGATGTACCACGAACACATCTATCTACC
GACAGGAGATTATCAGACGAAGGTCATGAGCGAGTACGAGCGCCTTGGCT
TCACAGGCGCGATCGGGTCTACGGATGTCACCCACCTCGCGTGGGGCTGT
TGCCCCTACAACCAAGCCCGTTCTTTCACAGGAAAAGAAGGGTATCCTAC
CATCGCATATCAAGTGACCGTCGATCACACTAAACGCGCGTTGGCAGTGA
CACCGGGCTTCACGGGCGCGACGAATGACAAGACGATCATCCGTTTCGAC
AAAGCTGTCACCCGGATCCGGACCGACCCGATCTACACCGAGCGCACGTA
CAACCTCTACGACGCGGACGGGGCGACACGCCAGGAGAAGGGGTGCTACT
TGCTGGTGGACAATGGGTATCACAAGTGGAACACTCTCATGGCCCCAACA
AAGTACGCAATAGAGAAGGGCGATACGGTGTTCTCCAACAGACTGGAGAG
CTCGCGCAAGGATGTGGAGTGCTATTTTGGCATCGTGAAAGGCCGCTTCC
GCATCAACAAGCTAGCGATCCCGTACCACAAGAAGGAAGACATCGACAAC
GTTTTCTTCACCTGCTGCATCCTCCACAACATGCTGCACAGCTACGAC
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