mRNA_P-littoralis_Contig116.83.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig116.83.1
Unique NamemRNA_P-littoralis_Contig116.83.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig116.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig116contigP-littoralis_Contig116:294692..295978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size304
Hectar predicted targeting categoryother localisation
Exons2
Cds size204
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789477.8334577-UTR-P-littoralis_Contig116:294691..2946971680789477.8334577-UTR-P-littoralis_Contig116:294691..294697Pylaiella littoralis U1_48UTRP-littoralis_Contig116 294692..294697 -
1680789477.869191-UTR-P-littoralis_Contig116:295884..2959781680789477.869191-UTR-P-littoralis_Contig116:295884..295978Pylaiella littoralis U1_48UTRP-littoralis_Contig116 295885..295978 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789477.8481722-CDS-P-littoralis_Contig116:294697..2947411680789477.8481722-CDS-P-littoralis_Contig116:294697..294741Pylaiella littoralis U1_48CDSP-littoralis_Contig116 294698..294741 -
1680789477.8601882-CDS-P-littoralis_Contig116:295724..2958841680789477.8601882-CDS-P-littoralis_Contig116:295724..295884Pylaiella littoralis U1_48CDSP-littoralis_Contig116 295725..295884 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig116.83.1prot_P-littoralis_Contig116.83.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig116 294698..295884 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig116.83.1

>prot_P-littoralis_Contig116.83.1 ID=prot_P-littoralis_Contig116.83.1|Name=mRNA_P-littoralis_Contig116.83.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=68bp
MKKLQQLSPPGADLSTYPYSPTQAPPNLQLGGTSDLITRKTFLERRAGIP
RRQDFGHGPTGCYGSRR*
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mRNA from alignment at P-littoralis_Contig116:294692..295978-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig116.83.1 ID=mRNA_P-littoralis_Contig116.83.1|Name=mRNA_P-littoralis_Contig116.83.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1287bp|location=Sequence derived from alignment at P-littoralis_Contig116:294692..295978- (Pylaiella littoralis U1_48)
GGCCCCTACAAAAAATAGACATTCTTGGAGGTAGCGAGGAAGCTACCCTT
AGGACAGAGTTCAAAAGCTGGAAGGCGGTACTTTCTCTTCCGGGATGAAA
AAATTGCAACAATTGTCCCCCCCGGGCGCAGACCTCTCAACATACCCATA
CTCGCCAACCCAAGCACCGCCAAATCTGCAACTTGGAGGGACCTCGGATC
TCATCACAAGGAAGACTTTCTTGGAAAGACGCGCGGGCATTCCCCGCCGA
CAAGGTGAGATCCGCGGAAATTCATGCGCCCTCGAAAGGCGGGGTTGCTT
CGCGCCAATTCTCGAGTACCCTCCACGCCACCCGTGAGGCCTTCGGATTA
GTTGATGATTAGCCCTACCACACTCAACATGCTCATAGACCATATCTCAG
AGAGCTTCCCATGCCAAGCCGTTTGTAAATCCAACCCGTGTGGACCGAGA
GCCAAGTGTAGTTCGGAATCTGAAAATTCAGATTATTGGGTGACAGCGGG
GCAGCGGGGCAAACGCCCGGACCTCCATTTTTTACACGCGTGTGCAGCCA
ACAACAAAGTTGCTACCGGCGGCACGATCATACGTGCCGCACATCGCGCG
TTGCTGTTGTCAGCAGTCGGCGAGTACAACGCCTGATCCTGCCCATAGTT
TTTGGTAGTTGTTCCAAAAATCGAGGCGTAGGAGTGGGTGACAAAACCAT
TCTGTACAGCACCAAACCATTCCTGCACAGCAGCCAGGGTGAACGCCTTG
CGTGCGCACCATCCAGGCGCTCATTCCAACCAGACCACCCTAGCCAGGGC
ATACGTGGCCGTGCAATAGCCCAACATTTTTCGTGCGTGTTTGATTAGGA
GTAAGGGTTTAGGCAGATGATTAATCCGCTTGTTTTTTTTCCAGCGTCGA
TGCTGGTCGTACACTCACAAGCAATGATGTGGCGGTATGTAGGTGTCCCT
GCTGAGCTGCTGTAGTTATGGGCCAAGAAGCACGCCCATCTACTACTGAT
GCATCCGTTGTTTTTGTAAGCGTGTGTGCATAAATTATGGTTACATTGTG
ATGCTTTATCCTATTCCGTATTTTCGCTAGATAGTAAGATATGCCCATCA
TGCCACAGTAGCAGCGCCGGGGGTAGGGCTCGTAGCCCTCTTTTTTGGTG
ATGTGATTTCGTGGCTCTCTGTGTACAGGTCCTGTTAAATCCTGCCGTCT
TGTGATAACCTGTTTTCGCTGCCATGTTGCTTAGCAGATTTCGGCCATGG
ACCTACGGGATGCTATGGGAGTCGGAGATGATACGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig116:294692..295978-

>mRNA_P-littoralis_Contig116.83.1 ID=mRNA_P-littoralis_Contig116.83.1|Name=mRNA_P-littoralis_Contig116.83.1|organism=Pylaiella littoralis U1_48|type=CDS|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig116:294692..295978- (Pylaiella littoralis U1_48)
ATGAAAAAATTGCAACAATTGTCCCCCCCGGGCGCAGACCTCTCAACATA
CCCATACTCGCCAACCCAAGCACCGCCAAATCTGCAACTTGGAGGGACCT
CGGATCTCATCACAAGGAAGACTTTCTTGGAAAGACGCGCGGGCATTCCC
CGCCGACAAGATTTCGGCCATGGACCTACGGGATGCTATGGGAGTCGGAG
ATGA
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