mRNA_P-littoralis_Contig60.161.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig60.161.1
Unique NamemRNA_P-littoralis_Contig60.161.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig60.161.1 vs. uniprot
Match: A0A6H5KJD0_9PHAE (CRAL-TRIO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJD0_9PHAE)

HSP 1 Score: 365 bits (937), Expect = 6.510e-118
Identity = 187/268 (69.78%), Postives = 218/268 (81.34%), Query Frame = 1 
Query: 1099 LTPEQTEMLELTIDEVRASPLCSSSDAIARGGRSAVWRYLEGASWRLEPGSAGKRVSEFFLETLQWRKDGDVDTILDRAHTFEAEAASGKLFVRGFSLRGQPVIWVHAGREQSGGEPDPKANIQFLIYTVERAIASMEWREGTPSRNNGQFCVVVDCSLIGAGGQLPPVAFLREAVSMLALRYPWRLGNLFIVNSGTVVYYLWLAISRLLLPRTRDKIVVVSGTEEQQREVLLGYMSAEALEGGRLGCPGQPAFDVDSYLKGGDAGGS 1902
            LTPEQ  MLE TI EV+ASPLCS + A+A GGR+AVWRYLEGA WRLEP   GKRVS+FFL+TL WR+DG VDT+LDRAHTF  EA+SGKLFVRG SL G+P+IWVHAG E S   P+  A+++FL+YTVERAIASME    TP+ + GQFCVV+DC+  G  GQLP +AF+REAVSML LRYP RLGNLFIVN+G +VYYLW AIS LL P TR+K+VVVSGTE+QQREVLL ++S +ALEGGRLG  G P F  +SYLKGGDAGGS
Sbjct:   30 LTPEQASMLETTIAEVQASPLCSDA-AVANGGRTAVWRYLEGAQWRLEP-VRGKRVSDFFLDTLAWRQDGGVDTVLDRAHTFVDEASSGKLFVRGTSLLGRPLIWVHAGWEDSASGPE--ASLRFLVYTVERAIASMEPETSTPA-SKGQFCVVIDCTATGGDGQLPSLAFVREAVSMLMLRYPSRLGNLFIVNAGNMVYYLWRAISLLLSPVTREKVVVVSGTEQQQREVLLQHISEDALEGGRLGLKGAPPFHAESYLKGGDAGGS 292
[Close]
BLAST of mRNA_P-littoralis_Contig60.161.1 vs. uniprot
Match: A0A7S2XX21_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX21_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.940e-19
Identity = 57/165 (34.55%), Postives = 90/165 (54.55%), Query Frame = 1 
Query: 1351 EAASGKLFVRGFSLRGQPVIWVHAGREQSGGEPDPKANIQFLIYTVERAIASMEWREGTPSRNNGQFCVVVDCSLIGAGGQLPPVAFLREAVSMLALRYPWRLGNLFIVNSGTVVYYLWLAISRLLLPRTRDKIVVVSGTEEQQREVLLGYMSAEALE---GGRL 1836
            EAA GK++  G    G+P+++     E      D +A++  L+YT+ERAI SM+ + G       +F V+VDC+  G   + PP++ +      L   YP RLG +F+VN+GT +  LW  +S +L  RTR K+  +S  E  Q   +  Y++ + LE   GG+L
Sbjct:   17 EAAGGKMYTLGRGRSGEPLVYFRPALETGS---DYEASLHLLVYTLERAIKSMDSKRGVE-----KFIVLVDCTGFGLS-RAPPISLVTGQFKTLMHNYPMRLGKVFVVNAGTPMNMLWKIVSPILNERTRHKVFFLSEKEISQH--IPQYVNPDVLEVEFGGKL 170
[Close]
BLAST of mRNA_P-littoralis_Contig60.161.1 vs. uniprot
Match: A0A6A5C7T7_NAEFO (CRAL-TRIO domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5C7T7_NAEFO)

HSP 1 Score: 79.3 bits (194), Expect = 2.350e-12
Identity = 60/190 (31.58%), Postives = 91/190 (47.89%), Query Frame = 1 
Query: 1258 KRVSEFFLETLQWRKDGDVDTILDRAHTFEAEAASGKLFVRGFSLRGQPVIWVHAGREQSGGEPDPKANIQFLIYTVERAIASMEWREGTPSRNNGQFCVVVDCSLIG-AGGQLPPVAFLREAVSMLALRYPWRLGNLFIVNSGTVVYYLWLAISRLLLPRTRDKI-VVVSGTEEQQREVLLGYMSAEAL 1821
            K+  +    TLQW ++      L  A     EAA+GK+F RGF    +PVI++  GRE +    D + NIQ L+Y++  A+A M       S    Q   V  C+  G      P ++  ++ VS+L+  +P RLG   IVN   V  + W  IS  + P T++KI    S  +E+  E    Y + + L
Sbjct:   90 KKSYDLLKSTLQWLEE--FKPYLITATKMTKEAATGKIFCRGFDKFNRPVIYMSPGRENTY---DGEGNIQLLVYSLFTAVARM-------SPGVSQMTWV--CNFEGYTMKNAPSISVCKQTVSILSSHFPERLGVALIVNPPRVFSWFWKLISPFIPPVTKEKIKFCYSSKKEEVIEFFSPYFTLDML 265
[Close]
BLAST of mRNA_P-littoralis_Contig60.161.1 vs. uniprot
Match: UPI001CFD545C (uncharacterized protein n=2 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFD545C)

HSP 1 Score: 76.6 bits (187), Expect = 1.750e-11
Identity = 56/190 (29.47%), Postives = 89/190 (46.84%), Query Frame = 1 
Query: 1258 KRVSEFFLETLQWRKDGDVDTILDRAHTFEAEAASGKLFVRGFSLRGQPVIWVHAGREQSGGEPDPKANIQFLIYTVERAIASMEWREGTPSRNNGQFCVVVDCSLIG-AGGQLPPVAFLREAVSMLALRYPWRLGNLFIVNSGTVVYYLWLAISRLLLPRTRDKIVVV-SGTEEQQREVLLGYMSAEAL 1821
            K+  +    TL+W +D      L  A     EAA+GK+F RGF    +PV+++  G+E +    D + NIQ L+Y++  A+A M           G   +   C+  G      P ++  ++ VS+L+  +P RLG   IVN   V  + W  IS  + P T++KI    S  +E   E    Y + + L
Sbjct:   84 KKSYDLLKSTLEWLED--FKPYLITASKMTKEAATGKIFCRGFDKFNRPVVYMSPGKENTY---DGEGNIQLLVYSLFTAVARMP---------PGVSQMTWICNFEGYTMKNAPSLSVCKQTVSILSSHFPERLGVALIVNPPKVFSWFWKLISPFIPPVTKEKIKFCNSSKKEDMIEFFSPYFTLDML 259
[Close]
BLAST of mRNA_P-littoralis_Contig60.161.1 vs. uniprot
Match: A0A2R6XFX2_MARPO (CRAL-TRIO domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XFX2_MARPO)

HSP 1 Score: 77.0 bits (188), Expect = 2.980e-11
Identity = 56/197 (28.43%), Postives = 96/197 (48.73%), Query Frame = 1 
Query: 1204 VWRYLEGASWRLEPGSAGKRVSEFFLETLQWRKDGDVDTILDRAHTFEAEAASGKLFVRGFSLRGQPVIWVHAGREQSGGEPDPKANIQFLIYTVERAIASMEWREGTPSRNNGQFCVVVDCSLIGAGGQLPPVAFLREAVSMLALRYPWRLGNLFIVNSGTVVYYLWLAISRLLLPRTRDKIVVVSGTEEQQREVL 1794
            V RYL+   + +      +R ++    TL WR++ DVD ++  A  F AE ASG  +V G    G+PV+ V   +  + G    K  +++LI+T+E A+ASM            Q+ +V+D     A    P  + +   + +L   YP RL   ++V+S +V+Y+LW +I   +   T+ K+   S  +    E +
Sbjct:   48 VERYLKARGYNV------RRAAKLLKATLAWRENFDVDYLI--ADEFTAELASGVSYVAGHDNEGRPVVIVRR-KNFTYGAWSQKQYLRYLIFTMEVAVASM-------GPGVDQWVLVIDMG--HAKLTSPSSSTILGTLRILNEHYPERLAKAYVVDSPSVLYFLWKSICPFVDYGTKGKVTFASSKDHALSEAV 226
[Close]
BLAST of mRNA_P-littoralis_Contig60.161.1 vs. uniprot
Match: A0A8J5X440_DIALT (CRAL-TRIO domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X440_DIALT)

HSP 1 Score: 75.9 bits (185), Expect = 3.470e-11
Identity = 66/226 (29.20%), Postives = 103/226 (45.58%), Query Frame = 1 
Query: 1204 VWRYLEGASWRLEPGSAGKRVSEFFLETLQWRKDGDVDTILDRAHTFEAEAASGKLFVRGFSLR-GQPVIWVHAGREQSGGEPDPKANIQFLIYTVERAIASMEWREGTPSRNNGQFCVVVDCSLIGAGGQLPPVAFLREAVSMLALRYPWRLGNLFIVNSGTVVYYLWLAISRLLLPRTRDKIVVVSGTEEQQREVLLGYMSAEALEGGRLGCPGQPAFDVDSYL 1878
            + RYL   S  ++  +A  R       T+ WR     D+I+DR      E  +GK FV  F  R G+ V+ +    E +      + NI  L+YT+ERA+ASM  R G P++    F      S+  A    PP+   +E + +L   YP RLG   ++++  +    + A+   + P TR+KI  +S T  Q  E L   +    +E    G   +P FD  +Y 
Sbjct:   79 LMRYLRARSMDVDKAAAMLRA------TIAWRHSFGADSIVDRLELVRTEGRTGKCFVAPFVDREGRTVLILRPRMENTRSY---EGNIVNLVYTLERAVASM--RAGGPTKLF-LFLDFKGYSMFNA----PPMKTSQETLHILQNHYPERLGKAVLLDAPWLFSGAFRALQPFIDPVTREKISFLSTTHAQHVEQLGAMVDRAVVETDLGGLLTKPHFDEAAYF 288
[Close]
BLAST of mRNA_P-littoralis_Contig60.161.1 vs. uniprot
Match: A0A176VPR4_MARPO (CRAL-TRIO domain-containing protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176VPR4_MARPO)

HSP 1 Score: 77.0 bits (188), Expect = 5.910e-11
Identity = 56/197 (28.43%), Postives = 96/197 (48.73%), Query Frame = 1 
Query: 1204 VWRYLEGASWRLEPGSAGKRVSEFFLETLQWRKDGDVDTILDRAHTFEAEAASGKLFVRGFSLRGQPVIWVHAGREQSGGEPDPKANIQFLIYTVERAIASMEWREGTPSRNNGQFCVVVDCSLIGAGGQLPPVAFLREAVSMLALRYPWRLGNLFIVNSGTVVYYLWLAISRLLLPRTRDKIVVVSGTEEQQREVL 1794
            V RYL+   + +      +R ++    TL WR++ DVD ++  A  F AE ASG  +V G    G+PV+ V   +  + G    K  +++LI+T+E A+ASM            Q+ +V+D     A    P  + +   + +L   YP RL   ++V+S +V+Y+LW +I   +   T+ K+   S  +    E +
Sbjct:  210 VERYLKARGYNV------RRAAKLLKATLAWRENFDVDYLI--ADEFTAELASGVSYVAGHDNEGRPVVIVRR-KNFTYGAWSQKQYLRYLIFTMEVAVASM-------GPGVDQWVLVIDMG--HAKLTSPSSSTILGTLRILNEHYPERLAKAYVVDSPSVLYFLWKSICPFVDYGTKGKVTFASSKDHALSEAV 388
[Close]
BLAST of mRNA_P-littoralis_Contig60.161.1 vs. uniprot
Match: A0A8K1CNM5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNM5_PYTOL)

HSP 1 Score: 71.2 bits (173), Expect = 4.780e-9
Identity = 60/194 (30.93%), Postives = 92/194 (47.42%), Query Frame = 1 
Query: 1276 FLETLQWRKDGDVDTILDRAH-TFEAEAASGKLFVRGFSLRGQPVIWVHAGREQSGGEPDPKANIQFLIYTVERAIASMEWREGTPSRNNGQFCVVVDCSLIGA---GGQLPPVAFLREAVSMLALRYPWRLGNLFIVNSGTVVYYLWLAISRLLLPRTRDKIVVVSGTEE-QQREVLLGYMSAEALEGGRLGC 1842
            +  TLQWRK+ D+D IL R H TFE        F  G S  G P+ +   G+           +I+ L+      I    WR   PS + G+   V+D S IG    GG++  + F++ A +     YP R  ++FI+N       +W  I  L+ P TR+KI ++ G+   ++ E L+   +  +  GGR GC
Sbjct:  506 YENTLQWRKENDIDDILIRPHPTFETIKKYYPQFFHGRSKAGLPIYYEQPGKINLPALKKEGLSIEDLLRHY-MYITEYLWRVIEPS-DTGRSVTVLDVSGIGMSDLGGEV--LDFIKRASAFTGAHYPERSAHIFIINIPGWFNMIWRMIKPLIDPVTREKIHMLKGSAILRELETLVDLDNIPSDFGGR-GC 694
[Close]
BLAST of mRNA_P-littoralis_Contig60.161.1 vs. uniprot
Match: A0A1V9ZR80_9STRA (Serine protease family S09A n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZR80_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.840e-9
Identity = 63/211 (29.86%), Postives = 93/211 (44.08%), Query Frame = 1 
Query: 1276 FLETLQWRKDGDVDTILDRAHTFEAEAASGKLFVRGFSLRGQPVIWVHAGREQSGG----------EPDPKANI----QFLIYTVERAIASMEWREGTPSRNNGQFCVVVDC---SLIGAGGQLPPVAFLREAVSMLALRYPWRLGNLFIVNSGTVVYYLWLAISRLLLPRTRDKIVVVSGTEEQQREVLLGYMSAEALE---GGRLGCPG 1848
            F + LQWRK+ D+D IL R H          + +     +   +I +        G          E D   ++    +FL   ++R    +           G    +VD    SL   GG +  V+F+++  S+  L YP RL  +FIVN  +    +W A+S L+ P+TRDKI VV G +E Q+  LL Y+ AE L    GG   C G
Sbjct:  453 FTKYLQWRKENDIDHILQRPHPHFKVIKESYIHLTHKEDKNGHIISIELAGSMKKGMQHFLSLGVVETDVVYHLGFYNEFLWNVIDRRPLPL-----------GTMLKIVDMNGVSLTDFGGDV--VSFMKQCSSVGELYYPERLYKVFIVNPPSWFNIIWKAMSPLINPKTRDKINVVKGQKEIQK-ALLEYIDAENLPVEYGGTCACEG 649
[Close]
BLAST of mRNA_P-littoralis_Contig60.161.1 vs. uniprot
Match: K3X232_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X232_GLOUD)

HSP 1 Score: 69.3 bits (168), Expect = 1.940e-8
Identity = 50/169 (29.59%), Postives = 80/169 (47.34%), Query Frame = 1 
Query: 1276 FLETLQWRKDGDVDTILDRAH-TFEAEAASGKLFVRGFSLRGQPVIWVHAGREQSGGEPDPKANIQFLIYTVERAIASMEWREGTPSRNNGQFCVVVDCSLIGA---GGQLPPVAFLREAVSMLALRYPWRLGNLFIVNSGTVVYYLWLAISRLLLPRTRDKIVVVSGT 1770
            +  TLQWRK+ D+D IL   H TFE        +  G S  GQPV +   G+           +I+ L+      I    WR   PS + G+   V+D + IG    GG++  + F++ A S     YP R  ++FI+N       +W  +  ++ P TR+K+ ++ G+
Sbjct:  532 YQNTLQWRKENDIDNILVTPHPTFETIKKYYPQYFHGRSKAGQPVYYERPGKIDLAALKREGLSIEDLLRHY-MYITEYLWRVIEPS-DMGRSLTVLDVTGIGMYDLGGEV--LDFIKRASSFTGAHYPERSAHIFIINIPGWFNMIWRMVKPMIDPVTREKVHMLKGS 696
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig60.161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KJD0_9PHAE6.510e-11869.78CRAL-TRIO domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2XX21_9STRA5.940e-1934.55Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6A5C7T7_NAEFO2.350e-1231.58CRAL-TRIO domain-containing protein n=1 Tax=Naegle... [more]
UPI001CFD545C1.750e-1129.47uncharacterized protein n=2 Tax=Naegleria lovanien... [more]
A0A2R6XFX2_MARPO2.980e-1128.43CRAL-TRIO domain-containing protein n=1 Tax=Marcha... [more]
A0A8J5X440_DIALT3.470e-1129.20CRAL-TRIO domain-containing protein n=1 Tax=Diacro... [more]
A0A176VPR4_MARPO5.910e-1128.43CRAL-TRIO domain-containing protein n=1 Tax=Marcha... [more]
A0A8K1CNM5_PYTOL4.780e-930.93Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9ZR80_9STRA4.840e-929.86Serine protease family S09A n=1 Tax=Thraustotheca ... [more]
K3X232_GLOUD1.940e-829.59Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig60contigP-littoralis_Contig60:629827..634752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LGX4
PFAMsCRAL_TRIO,HLH
Model size2214
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.19e-123
EggNOG OGsKOG1470@1|root,KOG1470@2759|Eukaryota
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-14_001570.1
Descriptionintermembrane phospholipid transfer
Cds size999
COG categoryE
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig60.161.1prot_P-littoralis_Contig60.161.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig60 630097..633807 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791252.9795613-UTR-P-littoralis_Contig60:629826..6300961680791252.9795613-UTR-P-littoralis_Contig60:629826..630096Pylaiella littoralis U1_48UTRP-littoralis_Contig60 629827..630096 -
1680791253.0569131-UTR-P-littoralis_Contig60:633807..6347521680791253.0569131-UTR-P-littoralis_Contig60:633807..634752Pylaiella littoralis U1_48UTRP-littoralis_Contig60 633808..634752 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791252.993662-CDS-P-littoralis_Contig60:630096..6303061680791252.993662-CDS-P-littoralis_Contig60:630096..630306Pylaiella littoralis U1_48CDSP-littoralis_Contig60 630097..630306 -
1680791253.0064123-CDS-P-littoralis_Contig60:630758..6309321680791253.0064123-CDS-P-littoralis_Contig60:630758..630932Pylaiella littoralis U1_48CDSP-littoralis_Contig60 630759..630932 -
1680791253.0216837-CDS-P-littoralis_Contig60:632492..6325641680791253.0216837-CDS-P-littoralis_Contig60:632492..632564Pylaiella littoralis U1_48CDSP-littoralis_Contig60 632493..632564 -
1680791253.0457692-CDS-P-littoralis_Contig60:633264..6338071680791253.0457692-CDS-P-littoralis_Contig60:633264..633807Pylaiella littoralis U1_48CDSP-littoralis_Contig60 633265..633807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig60.161.1

>prot_P-littoralis_Contig60.161.1 ID=prot_P-littoralis_Contig60.161.1|Name=mRNA_P-littoralis_Contig60.161.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=333bp
MNLAEDGMTPVVAVATRETPGAGQILTKEQQQQQQQQPWTWEGGGQPPPP
ELTPEQTEMLELTIDEVRASPLCSSSDAIARGGRSAVWRYLEGASWRLEP
GSAGKRVSEFFLETLQWRKDGDVDTILDRAHTFEAEAASGKLFVRGFSLR
GQPVIWVHAGREQSGGEPDPKANIQFLIYTVERAIASMEWREGTPSRNNG
QFCVVVDCSLIGAGGQLPPVAFLREAVSMLALRYPWRLGNLFIVNSGTVV
YYLWLAISRLLLPRTRDKIVVVSGTEEQQREVLLGYMSAEALEGGRLGCP
GQPAFDVDSYLKGGDAGGSGDSDGVIDEVSDS*
back to top

mRNA from alignment at P-littoralis_Contig60:629827..634752-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig60.161.1 ID=mRNA_P-littoralis_Contig60.161.1|Name=mRNA_P-littoralis_Contig60.161.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4926bp|location=Sequence derived from alignment at P-littoralis_Contig60:629827..634752- (Pylaiella littoralis U1_48)
TCTCAAATTGTCTTGTTGAGCCTGGTAACCTCGGGAGCTGCGACGGTGCA
TTTCTGATGAGTTTAGAAAAAACACAATGACAGGTGTGTACATTCGTTAA
CGGTTGCTAAAATCTGCTCTAAATCCTCGTCCAGGAAAGAGAAAAGAAAA
ACAATACACAACACTTCGTTATATATACGAATGGTCTCTCGACTTCGAGA
CTCTCGACTCTCTCTCCCTGCCTCGACTTTCGAATCTGTTTCGGTCTTTA
TGTCTCTGTGCTGATTCAACGTATCGTTTTCTGTTATACAGTACACGAAG
AATGACGACAACTGTTGCACTGCTGTCCTGCTGTGTGTGATGTGGGATAT
CACTCTCGTACGACAAATGCTACAACAATGCAGGGAACACAAGAAGACGG
GGTATCTCGGTATCTCACGGATCTCACGATCCACGATCTGCGATGACACG
GAGAATGGTGTATCTGATTGGGCAGAAATCATGCCGCCTGTATTCAGAAT
TCACGCCTTTCTCGTCACACGACATACCGATGTCTCTTATCATAAACAGC
TAGTCTGCGTGCGAAATCAGGAGGTGGGTCCTTCGACAACATAAGTGCCC
ATCTCACAGCGAGGGGTAATTTCCTGCGACTTCTACGAGCAAGGATTGGA
TCAGAGCTTCTGCGTAAATTCATGTTAGGATCATAGTTGTTCAAAAGGCG
GTAGTGATTGCGCTGAAGGTCGGCTCCATCGCGGGAAAAAGAGGCTCCTT
GGTTCTTGGTGCTGCGGACGTTTGTTGCCCCCCGGTACATCGGCGAGATC
TGATTCTTAGAGTCCCCGGACAGAAGGGAGACGCATCCCAGGTCCAGACC
TGTGCAGTGTAGACTGTAGACAGCAGAGAGGTCCGAACCTCCGGACAATA
CTGCTGTACACGTCGCAACGACACATTTTCTATAAGTCACGCGCCATGAA
CTTGGCGGAAGACGGGATGACTCCAGTAGTAGCAGTGGCAACAAGAGAAA
CGCCAGGAGCCGGACAAATTTTAACGAAGGAGCAGCAGCAGCAGCAGCAG
CAGCAGCCGTGGACATGGGAAGGCGGCGGCCAGCCACCACCGCCCGAGCT
CACGCCTGAGCAGACGGAGATGCTCGAGCTGACCATCGACGAAGTCCGAG
CCAGCCCTCTCTGCTCCTCCTCCGACGCCATCGCTCGGGGAGGAAGGTCG
GCCGTCTGGAGGTACCTGGAGGGCGCGTCGTGGAGGCTTGAGCCGGGCTC
CGCAGGCAAGCGAGTGTCGGAGTTTTTCCTCGAGACGCTGCAGTGGAGAA
AGGATGGAGACGTTGACACCATCCTGGATCGAGCTCACACCTTTGAGGCC
GAAGCTGCCTCGGGCAAGCTCTTCGTCAGGGGGTTCTCTCTACGGGGCCA
GCCGGTGATCTGGGTGCACGCGGGGCGAGAGCAGAGCGGCGGCGAACCCG
ACCCGAAAGCCAACATTCAGTTCCTGATATACACTGTGGTGAGCGGCAAG
CCTCAGAACGACAGCGGTAAACACAGCAGGCATGATGACCCTATTTCTTC
GAGGCTGTGTAAGTCGGAGATCGATCAGTTTTTTTCAACCCTGCCAAGGC
TACTAAACCAAAAACCTTGTGCAATATGTAGGTAATAAGCAGATAGGAGA
GTCAGGTCCAGAAGATATTGTCGTTGATTTTTACTTGTATCAAGAAAGTG
TCACTTCTCACGTCAAGACGATAACGCAGGTTGCTCAGAATAAGCGCTCC
GGTGGACTCATGTGAGGATGAACCTCATTTCAGGGGTTCATCGGATGAAC
CCCTGAATTGAGCGGAAGACACCATCCATGTGTAGGCGACCTGCTCGTCG
GCACGCTCAAATCTGCTGCCGGGGCCGACATGTCATTGGGCCTCGAAACT
AAAATTATCTATCGTATGTACTACACCTCGCTTGGGCCTTCCAAGAACCA
AAGTGACCTGCGCTTGTAGGCCTCCGTCGCTGTGGTCATCAGTACACAGG
AGCGGTGCGCTTACTTGTTTTGTTTTTAAGCTCAGTACCGCCGGTACTGC
TTTTCAAGCAGTTTGTCGGCGAGTTACTCGAGTAAACGAAAACCCAACCA
TTGCCACCTCCGTCTCCGCCTCCGCCGCCACCCCCGCGTGCTGCGCCCCC
TTAACAACCGATCCGTAACGCGAATCGACCCAAATAAGGAGCGAGCGATC
GCCAGCATGGAATGGCGAGAGGGCACGCCGAGTAGGAACAATGGGCAGTT
CTGCGTCGTGGTGAGTTAAATTCGTTATTGCACGGCTGGCACTGCTTGTA
CTTGCAGTGAGAGGAGGGGGGGTAAATGTAGCACACAAGGTTTAAGGATA
ACCGTCCACTGGAAAAAAAAACTTGGCTTCGATCGAGGTGACCGTCCCGG
CTGGCGTCATTCGCGATTTATACTGATCACCTTTCATTCGGAGTGATTTT
TCACCGTGGGTGGCGTGTTGGGCGAGTGAGAGCTGGTCGTTACGATGTAT
CTGCCCCGCACAGCGATGAGGAAGCGAGGCCCTGGTACCAGGTACCAACA
ATACAGTGAAGGAACACCTGTCATAGTGAGGAACGCTCTGTGAGATCCTA
CTGTTGTAGCAATACTCAAGGGTTGAGGAAATGTATCGCCCCGTTTCACA
TGATGGTTCTGCGGTAAAACGCAAGTGAAGCCGAGCATGGGAAGTCCCAG
TGAGGACGTTCTCGGTATCTCAAGAAAATTCGAGAGAAAATTCTGAAATC
TCTGGCACACAAAGGTGATGCGCGCTTAAACGTTCAGTGTAGGATCAACA
AACGTTCCCTGCATGTTGAAAAACGTACCCAACCGGTCTCTACCAAAATA
TTGCAGGCATGTTTTTTCTGAGTGTCTTTGTGGTACCATCATCCCGCTGA
ACCACGGGACCCCCAACAACACATGAATTCAAAGCTCGATTGCTCCTGCG
ACACAGAGGCTGACAACAAAAATGCAAGGCTCGTCGTATTAAATGTCACC
TGGTGTTTGTTTTCTTTGTACGGTGTGTACCTCAAGTGTTCTGTTTTTCC
TGTGGTCCCATATTCCATACCTGTGGTCCTAGGTTTATGTTTACTTCGAA
GTACTATCTTCGTAGTGCAGGCTTTTCATGATGTGGGAGGTTTTCATGAA
GACGGGCGGCCTCGGCATGACTGCCGGCGCGCGCGAAGAGGCCGCAATAT
TGTGCCCCTTGGTCTCGGAGATGACGTCACCGTCACCGTCACCGTCAACC
GTCAACCGTCAACCGTCAACCTCTCCGACTTTCCGACAGGACCACGAACA
GGGAGGCATCCCACCGCCTCTGCCCCCTGTCCGTGTGTCCCGATAACCCT
AGTGCCTCAGCAAGTGCGAAGACACATCGTACCGGGGTCTGCAGTCACGA
CCCACCTTCGTATATGACGCCGATTCGCGTATAGCCGCCACAATACCTAC
CGACGACGGGTGGGTGGGAAAATATCACGCGGGACGGCGGCCGCGGCGGT
GATACAGGAAGCGCAACAGTTTGGTTTGTGGCGGTCGATCAAAGCGTGCT
TTTTTTTATTTTTTCTGTTTCCCCTTCATCAAGACTTGAAAAACGAAGAG
CAACGCCAGCTTCCCCTTCCCATGAAAAAAACAACGCAAGAGTTTTCCTT
TAAAACACACCTTAGACCAAAGTGCAAGTGCACACATCACGTGCCCCCCC
TCCCCCCCCCCCCCTCCTCTCTCCTCTCTTCTGAGCTCCATGCCGACAGC
AGCAAGTTAATTTATTTTGGGTTTGGTTGCTTGCTGCTCGTCATTCGGTT
TTGGGTACTGGTGGTGCCAGGTCGATTGCTCTTTGATTGGAGCAGGCGGT
CAGCTACCGCCCGTCGCCTTCCTGAGGGAGGCCGTGTCGATGCTGGCGCT
GCGGTACCCGTGGCGACTCGGTAATTTGTTCATCGTCAACTCCGGCACCG
TCGTGTACTACCTGTGGCTGGCGATCTCGCGCCTGCTGTTACCGGTGTGT
GGAGAGACGCTATAATAATACACATTTACGTAGGATACCGCGTATGTAGG
TAGGTCTCGCCGCCTGTGTGTGTGTTTTTTTTTTTTTTTCACGCCGCTGA
AGGTGTGTTCCGCGCCATGTCTTCCCGCCGTGAGCACGCGACTACTACAG
TATCACACTTTGGATCATACTGCTGTGCTGTGTGTATGTAATGTAGTGCG
TTCCCCGCTCATGCGTGTATGTACGACATAAAAGCTGAAAACAAAAGCTC
TGGTCTGGTGATTTCGTTCTCGCCATGTGCGGCGAACGGGGAGTACCGCC
GGCCGCGAAAGGTCGGGCTCCATGCGCGCTTGACGAAGGTGCGTTCGGTG
TTCTTCCGCGGACGTCTGTGTCCCTCCAGGAAATCCCCGCTGCGACTGAC
CTACCCACCCCACCCCCACTCCATGTCCCTCGCCTTCCTGGAACAGCGAA
CCCGCGATAAGATCGTGGTAGTGTCTGGCACGGAAGAGCAGCAGCGAGAA
GTGCTGCTCGGCTACATGTCGGCGGAGGCTCTGGAAGGCGGGCGGCTAGG
CTGCCCTGGACAACCAGCCTTTGATGTCGATAGCTACTTGAAGGGCGGTG
ATGCCGGAGGCAGCGGCGACAGCGACGGCGTTATCGACGAGGTCAGCGAC
AGCTAGCATCGTTGAATTGTCGATTATGCTTTGTCCATTTCAGCGGCGGC
GGCAGCGGCGGCAGCGGCGGCGGGAACTAGCCGGGGGCATCACACCGTTC
TCATATGATAGCGCCAGCAGCGGCGGCGGCGGCAGAAACTAGTGTTCTCA
TCTTCTTCACTACCGAAGAGGAGGGAGGCGTGTTTTATTTTTACCTGCAC
CCAGTGTAACCGTAACATGAGCGACTACATAAGAAATCTATCTCGGGGAC
GGTCGGCCAGGAGGCGAATCGGCGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig60:629827..634752-

>mRNA_P-littoralis_Contig60.161.1 ID=mRNA_P-littoralis_Contig60.161.1|Name=mRNA_P-littoralis_Contig60.161.1|organism=Pylaiella littoralis U1_48|type=CDS|length=999bp|location=Sequence derived from alignment at P-littoralis_Contig60:629827..634752- (Pylaiella littoralis U1_48)
ATGAACTTGGCGGAAGACGGGATGACTCCAGTAGTAGCAGTGGCAACAAG
AGAAACGCCAGGAGCCGGACAAATTTTAACGAAGGAGCAGCAGCAGCAGC
AGCAGCAGCAGCCGTGGACATGGGAAGGCGGCGGCCAGCCACCACCGCCC
GAGCTCACGCCTGAGCAGACGGAGATGCTCGAGCTGACCATCGACGAAGT
CCGAGCCAGCCCTCTCTGCTCCTCCTCCGACGCCATCGCTCGGGGAGGAA
GGTCGGCCGTCTGGAGGTACCTGGAGGGCGCGTCGTGGAGGCTTGAGCCG
GGCTCCGCAGGCAAGCGAGTGTCGGAGTTTTTCCTCGAGACGCTGCAGTG
GAGAAAGGATGGAGACGTTGACACCATCCTGGATCGAGCTCACACCTTTG
AGGCCGAAGCTGCCTCGGGCAAGCTCTTCGTCAGGGGGTTCTCTCTACGG
GGCCAGCCGGTGATCTGGGTGCACGCGGGGCGAGAGCAGAGCGGCGGCGA
ACCCGACCCGAAAGCCAACATTCAGTTCCTGATATACACTGTGGAGCGAG
CGATCGCCAGCATGGAATGGCGAGAGGGCACGCCGAGTAGGAACAATGGG
CAGTTCTGCGTCGTGGTCGATTGCTCTTTGATTGGAGCAGGCGGTCAGCT
ACCGCCCGTCGCCTTCCTGAGGGAGGCCGTGTCGATGCTGGCGCTGCGGT
ACCCGTGGCGACTCGGTAATTTGTTCATCGTCAACTCCGGCACCGTCGTG
TACTACCTGTGGCTGGCGATCTCGCGCCTGCTGTTACCGCGAACCCGCGA
TAAGATCGTGGTAGTGTCTGGCACGGAAGAGCAGCAGCGAGAAGTGCTGC
TCGGCTACATGTCGGCGGAGGCTCTGGAAGGCGGGCGGCTAGGCTGCCCT
GGACAACCAGCCTTTGATGTCGATAGCTACTTGAAGGGCGGTGATGCCGG
AGGCAGCGGCGACAGCGACGGCGTTATCGACGAGGTCAGCGACAGCTAG
back to top