mRNA_P-littoralis_Contig116.82.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig116.82.1
Unique NamemRNA_P-littoralis_Contig116.82.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig116.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig116contigP-littoralis_Contig116:293007..294681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size373
Hectar predicted targeting categoryother localisation
Exons4
Cds size372
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789477.7668846-CDS-P-littoralis_Contig116:293006..2931301680789477.7668846-CDS-P-littoralis_Contig116:293006..293130Pylaiella littoralis U1_48CDSP-littoralis_Contig116 293007..293130 -
1680789477.777262-CDS-P-littoralis_Contig116:293696..2938021680789477.777262-CDS-P-littoralis_Contig116:293696..293802Pylaiella littoralis U1_48CDSP-littoralis_Contig116 293697..293802 -
1680789477.7877696-CDS-P-littoralis_Contig116:294036..2941301680789477.7877696-CDS-P-littoralis_Contig116:294036..294130Pylaiella littoralis U1_48CDSP-littoralis_Contig116 294037..294130 -
1680789477.7963467-CDS-P-littoralis_Contig116:294633..2946811680789477.7963467-CDS-P-littoralis_Contig116:294633..294681Pylaiella littoralis U1_48CDSP-littoralis_Contig116 294634..294681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig116.82.1prot_P-littoralis_Contig116.82.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig116 293007..294681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig116.82.1

>prot_P-littoralis_Contig116.82.1 ID=prot_P-littoralis_Contig116.82.1|Name=mRNA_P-littoralis_Contig116.82.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=124bp
QDAPFSPVRRGPIFTKETIGGDDANSMDTDEDDRVHPDPDADRFTPQGED
DDDDETMSEDEEEDEVREVLVHRAALLSCGTVSDGSNGRNCSRESGGSEG
SSEGTAATAMLHTSIETLRERRDE
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mRNA from alignment at P-littoralis_Contig116:293007..294681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig116.82.1 ID=mRNA_P-littoralis_Contig116.82.1|Name=mRNA_P-littoralis_Contig116.82.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1675bp|location=Sequence derived from alignment at P-littoralis_Contig116:293007..294681- (Pylaiella littoralis U1_48)
CAGGATGCTCCATTTTCGCCAGTCAGAAGAGGACCTATTTTCACAAAGGC
AAGTCCATGGCGCCTTGTCGTCATTCACGCTAGCGTGCCCACCGCGGTGA
GCTTTCCTATAGATTTGTCACCGGCATTCTGTGGTTTGAACGGTGAACGG
AATTAATTATGGACCTAAATACGATACATAGGCACAGATAGCCCACATGC
CGAGATGGAGAGTCAAAGTGTTTGGAGGAACCGCAGAAAGGGGGTATTGT
AGTGAGTGCCATAAGGAGCGCGAGAACTGGACAGCAGTACAGGCAGCAGT
AGGGGCATCAGCACAGGCGTCGTACAGGGGTAGCAGGCTTCGTATGTATA
AAGGACTCCGGTGTCCCAGATTTATCGTGGGTTGATATACTAGCACTGCT
GTTAGTTGCGTAAGGGTCGGGTTTTCCGCATATATATCCAACATGCCGTA
GAGTATCCTACCGGTAGCTTTGTTGGCCTTGCGCATGTGATTCGGCAAGG
TTCTACGGTTCCTAACTTCTCATTCTCCGTATTTCGTTATACTTCATACA
GGAGACGATTGGCGGTGACGACGCTAATAGCATGGACACCGACGAAGACG
ATCGGGTACATCCCGATCCCGACGCTGACAGGTTTACGCCGCAAGGTACG
ACAAAACACAGAACAATTGCCGACCGCGCCTGTTGTGCGTCACTTTACCA
TCAGCGGGCTCGTTGTAGGTGAAAAGTGTGTGGTTCCTTTTGCGTGGACT
TGGCATGCCCAACTCTATTTTCTGGTGCCCTGAAACATGACAACCCACCC
TTGCCGAACGCCTGGCCCTCCCGACCCTGCCCCCCGCCTTTCCCCCGCCC
CTCGTTGTCTGCTTCCGTGGTATGGCTAGGAGAGGACGACGATGACGACG
AGACGATGTCGGAAGATGAGGAGGAGGACGAAGTTCGAGAAGTCCTGGTA
CATCGTGCGGCCCTTTTGAGTTGTGGGACGGTGAGGCCAAGTCGTGTATG
CGTCCTGCCCAATTGCTGTCGCGGACCTCGTGGTGTAGTTTTCGTCACTT
GTCGCCTCTCTCTCTGTGTCAAAGGTGGAAGATGTACCTTGTTAACTGGC
GGGGGATCACCCCGAGCCAGAACTACCGTATTCTACACAAGATACCACAC
CCCGTCTTAAGCTTTTTGCATTCCGTATAGCTCCACAACCAGGAGGGTGC
CACTGCCGAAAAGGGTGGTTTTGGAAAGATCTCGTCGAGAGCTTTCGTAT
GACGGGCTGTTTGGTGTTCGCACCCTCCTGATTGTGGAGCAATACGGAAT
GCAGCGGGGTGTGGTATCTTGTGTAGAATACCCCACCCATGTGAGCAAGC
TACTAATCTAGCTCTTGTCATACGGGATGCACATAAATTGTCACGCCGCG
GTGCCCCCCGTGTGCGCCTATCTGAAGGCATGAAACCGACATGAACCTTG
CCTCCGCACCGCTGGATGTCCATTCTAAGTACGTGCTCTCCGTTGCTGTC
AAACTCCCCTATTTGTCCGTAACTGTTGATCTGGACAGGCAACGGGGGCA
GCGACGGAAGCAACGGCAGAAACTGCAGCAGAGAAAGCGGAGGCAGCGAA
GGCAGCAGCGAAGGCACGGCAGCAACGGCAATGCTGCACACGTCCATCGA
GACCCTCCGCGAGCGCCGAGATGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig116:293007..294681-

>mRNA_P-littoralis_Contig116.82.1 ID=mRNA_P-littoralis_Contig116.82.1|Name=mRNA_P-littoralis_Contig116.82.1|organism=Pylaiella littoralis U1_48|type=CDS|length=372bp|location=Sequence derived from alignment at P-littoralis_Contig116:293007..294681- (Pylaiella littoralis U1_48)
CAGGATGCTCCATTTTCGCCAGTCAGAAGAGGACCTATTTTCACAAAGGA
GACGATTGGCGGTGACGACGCTAATAGCATGGACACCGACGAAGACGATC
GGGTACATCCCGATCCCGACGCTGACAGGTTTACGCCGCAAGGAGAGGAC
GACGATGACGACGAGACGATGTCGGAAGATGAGGAGGAGGACGAAGTTCG
AGAAGTCCTGGTACATCGTGCGGCCCTTTTGAGTTGTGGGACGGTGAGCG
ACGGAAGCAACGGCAGAAACTGCAGCAGAGAAAGCGGAGGCAGCGAAGGC
AGCAGCGAAGGCACGGCAGCAACGGCAATGCTGCACACGTCCATCGAGAC
CCTCCGCGAGCGCCGAGATGAA
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