prot_P-littoralis_Contig60.149.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig60.149.1
Unique Nameprot_P-littoralis_Contig60.149.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length602
Homology
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: D8LGX6_ECTSI (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGX6_ECTSI)

HSP 1 Score: 676 bits (1745), Expect = 1.200e-238
Identity = 393/501 (78.44%), Postives = 428/501 (85.43%), Query Frame = 0
Query:   93 EQCSAETTFQGKHRVVHIATPAAPPPWVQAEDGDEDAGAAEERATIAQLVSYFGAVSVARGTELVKFGSVYIGEVVDTSWRHPPSKEKQLTVAAARKKAAKSAQQAPFRGTSFEHMKLRRLHPWESGMFPPHGSYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAHCCRSKAFDGSRRPRIYAGFDEELLAGEKWGGAWQDARSMVLLCAPASGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGFSPEEMQEAAEMAEGALADEGGEGRASSSDAEGAAAMVPGXXXXXXXXXEDGGDGHVPHLCAMELETGRTHQLRLQLAAMGAAIVGDTRYRGVVGRVHRGLRTDDDASKFGQEPEAIALQAARIEFEWRGATVVYSAERPSWAL 593
            E CSAETT+QG+HRVVHIATP APPPW++ E+  E     E+RATIA+LVS+FGAVS  RG ELVKFGSVYIGEVVDT+WRHPPSKEKQ+T+AAARKKA KSA QAPFRGTSFEHM+LRRLHPWESG FPPHG+YLRVHCDPR FPASQ  DW KRIVH N DFVV+DKP GVPTVPTIDNGVQNC+FQASLAVAG+   SRSLPP LHAVSRLDVCTSGIVVFARHKEAAKQLNELFR R+VKKRYLALLTPGP VP G +AHCCRSKAFDGSRRPRIYA FDEELLAG+KWGGAWQ+ARS VLLCAPA+G+AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    PEE++ AA   EG   ++G    +++ DAE   A              + GD H PHLCAMELETGRTHQLRLQLAAMG+AIVGDTRYRGVVGRVHRGLR DDD S+FGQEPEAIALQAARIEFEW+G TVV+S +RPSWAL
Sbjct:   24 EGCSAETTYQGEHRVVHIATPGAPPPWLEDEEQGE-----EQRATIAELVSHFGAVSRERGVELVKFGSVYIGEVVDTNWRHPPSKEKQMTIAAARKKALKSADQAPFRGTSFEHMRLRRLHPWESGNFPPHGAYLRVHCDPRTFPASQVMDWSKRIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCVFQASLAVAGMPPGSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARRVKKRYLALLTPGPAVPTGSMAHCCRSKAFDGSRRPRIYADFDEELLAGDKWGGAWQEARSTVLLCAPATGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEEIEAAARGGEGREEEDG----STAPDAEATTAAEA---------AREEGD-HAPHLCAMELETGRTHQLRLQLAAMGSAIVGDTRYRGVVGRVHRGLRVDDDTSRFGQEPEAIALQAARIEFEWQGRTVVFSTDRPSWAL 505          
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: A0A835YKX4_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKX4_9STRA)

HSP 1 Score: 196 bits (499), Expect = 2.830e-53
Identity = 130/368 (35.33%), Postives = 167/368 (45.38%), Query Frame = 0
Query:  225 GSYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAHCCRSKAFDGSRRPRIYAGFDEELLAGEKWGGAWQDARSMVLLCAPASGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGFSPEEMQEAAEMAEGALADEGGEGRASSSDAEGAAAMVPGXXXXXXXXXEDGGDGHVPHLCAMELETGRTHQLRLQLAAMGAAIVGDTRYRGVVGRVHRGLRTDDDASKFGQEPEAIALQAARIEFEWRGATVVYSAERPSWA 592
            G+YLR+H  PR F  +   DW+ R++HA AD+VV+DKP GVP+VPT DN   + L++A  A+ G AA        LHAVSRLDVCTSG++VFAR   AA  L+     R V+K Y  ++T G  VP+G + HCC ++A  G  +PRIYA FD     G+  G  W+ A   VL     SGA+                                                                                                         + L TGRTHQ+RLQLAA+GA IVGD+RY  ++G+VH G    D    FG EPE I L AA +EF+W G  V Y+AE P WA
Sbjct:  150 GTYLRLHAAPRRFARAAAADWRARVLHACADYVVIDKPAGVPSVPTTDNAADSALWRARAALGGDAARP------LHAVSRLDVCTSGVLVFARSPAAAAALSGAISARAVRKVY-RVVTTGAEVPLGVLRHCCSTRARTGDAQPRIYAPFDAAKACGD--GSGWRLAELEVLSHDRGSGAS--------------------------------------------------------------------------------------------------------TISLMTGRTHQIRLQLAALGAGIVGDSRYADIIGKVHDGTAASDRTDWFGPEPEEIRLHAAALEFDWGGERVCYTAE-PPWA 403          
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: A0A5J4Z0G8_PORPP (RNA pseudouridine synthase 6, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0G8_PORPP)

HSP 1 Score: 149 bits (376), Expect = 1.200e-35
Identity = 126/372 (33.87%), Postives = 158/372 (42.47%), Query Frame = 0
Query:  225 GSYLRVHCDPRMFPASQGTDWKKRIVH-ANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGP-PVPV----GPVAHCCRSKAFDGSRRPRIYAGFDEE------LLAGEKW---------GGAWQDARSMVLLCAPASGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGFSPEEMQEAAEMAEGALADEGGEGRASSSDAEGAAAMVPGXXXXXXXXXEDGGDGHVPHLCAMELETGRTHQLRLQLAAMGAAIVGDTRYRGVVGRVHRGLRTDDDASKFGQEPEAIALQAARIEF 575
            G Y R+H +P  +P +    WK RIV+  + DFV +DKP  +P+VPT+ N V+    Q   A+          P  LHAVSRLDVCTSG++VFARHK AA  LNE  R+R VKKRY  LL PGP P  +    G V H  R+   D   +PRIY   D E      LL  E +         GGAW  A   +L     + A                                                E+ E   M     AD  G                           E            +EL TGRTHQLRLQ A++G  + GD+RYR V GRVHRG+  DD+   FG EP  ++L A+   F
Sbjct:  141 GMYFRLHANPARYPDAHAYVWKDRIVYNGDNDFVAVDKPPNLPSVPTLVNVVECARTQVECAL--------ECPAPLHAVSRLDVCTSGVLVFARHKRAAAHLNEQIRNRSVKKRY-TLLVPGPIPREIIQKDGRVLHAARTNLPDNIPKPRIYRLLDLEKDLDAALLQDESYSTPLEAPKIGGAWHVAAMRILTEREMNRA------------------------------------------------ELSEVVTM----QADHAG-------------------IDVRYTEYE------------VELLTGRTHQLRLQFASLGLPLFGDSRYRPVSGRVHRGVPEDDNLDMFGPEPNRVSLCASVFHF 420          
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: D7G898_ECTSI (Ribosomal large subunit pseudouridine synthase D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G898_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 8.270e-28
Identity = 61/75 (81.33%), Postives = 66/75 (88.00%), Query Frame = 0
Query:  278 CLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVG 352
            C  QASLAVAG++  SRSLPP LHAVSRLDVCTSG+VVFARHK+A KQLNELFR R+VKKRYLALLTPGPPV  G
Sbjct:   71 CFQQASLAVAGISPGSRSLPPPLHAVSRLDVCTSGVVVFARHKDATKQLNELFRARRVKKRYLALLTPGPPVSTG 145          
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: K7PEZ7_9BACT (Pseudouridine synthase n=1 Tax=uncultured bacterium TaxID=77133 RepID=K7PEZ7_9BACT)

HSP 1 Score: 104 bits (259), Expect = 4.740e-21
Identity = 55/125 (44.00%), Postives = 74/125 (59.20%), Query Frame = 0
Query:  225 GSYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPV 349
            G Y+RVH +P+ FP  +G DW   IVH +  FVV++KP G+P   T+DN V+N L Q  +A+ G           L+   RLD   SG++V AR +E  +Q N L  DRK+KKRY AL+T  P V
Sbjct:   62 GQYIRVHLNPKRFPV-EGIDWATTIVHRDKAFVVVNKPAGIPVHATLDNQVENLLHQLRVALGGA----------LYVTQRLDTDVSGLIVVARTQEFQRQFNRLLADRKLKKRYRALVTTAPEV 175          
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: A0A7S0H4S4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0H4S4_9CRYP)

HSP 1 Score: 97.1 bits (240), Expect = 8.540e-19
Identity = 60/178 (33.71%), Postives = 93/178 (52.25%), Query Frame = 0
Query:  225 GSYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAHC-CRSKAFDGSRRPRIYAGFDEELLAGEKWGGAWQDARSMVLLCAP 401
            GSY+RVH  P+ F      DW  R++  + DF+V++KP GVP++ TIDN ++ C+      +  +     SL P     SRLDVCT+G+++FA+ +E     N+   +R+ +K Y  LL+ G  V  G V H  CR +    + RP +   + +     +     WQDA   +L C P
Sbjct:   90 GSYVRVHAQPKRFLTVYKMDWNARVICESEDFIVINKPPGVPSLTTIDNAIE-CVMSQVEKIKNI-----SLMP----TSRLDVCTAGVLIFAKTREFCMSTNKAMSERRSEKIY-KLLSEGE-VQTGTVRHLFCRKRKGHKNSRPTLLRAWQDLTSRKDLQEEGWQDAVLEILDCRP 255          
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: A0A8J9RE80_9CHLO (Probable mitochondrial RNA pseudouridine synthase Rpusd4 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RE80_9CHLO)

HSP 1 Score: 99.0 bits (245), Expect = 2.490e-18
Identity = 55/131 (41.98%), Postives = 74/131 (56.49%), Query Frame = 0
Query:  226 SYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAH 356
            +Y+RVH  P+ FP +   DWK RIVHA  DFVV++KP GVP VPT+DN +++CL   + A+        S P  L +  RLD CT G+VV  R ++     NEL R     +++   LT  PP P G   H
Sbjct:  127 AYVRVHVHPKRFPNAYKVDWKARIVHAAQDFVVINKPAGVPVVPTVDNILESCLACTAQALG------ESSP--LLSTHRLDTCTEGLVVLGRKRDFVAAFNELLRLPGAVQKFYRALTKSPP-PTGASVH 248          
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: A0A7S0TTK8_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TTK8_HEMAN)

HSP 1 Score: 94.7 bits (234), Expect = 2.660e-18
Identity = 57/152 (37.50%), Postives = 84/152 (55.26%), Query Frame = 0
Query:  223 PHGSYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAHCCRSKAFDGSRRPRIYAG 374
            P GSYLRVH  PR FP +   DW+KR+VH N+++V+++KPGG+P   ++DN  +      + A   L+A+  S+     A+ RLDV T G++   R    A   + L R R+V+K YLAL +  P +  G + H  R       R PR+  G
Sbjct:   93 PQGSYLRVHPSPRRFPVAWTADWQKRLVHVNSNYVIVNKPGGLPCHASLDNAKETT---EACAERALSAEVGSIS----ALHRLDVPTHGLMCLGRTPFFAAHFSRLLRMRRVRKEYLALASAPPQL--GSMVHYMRPS----ERSPRVVRG 231          
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: I0Z0I0_COCSC (Pseudouridine synthase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z0I0_COCSC)

HSP 1 Score: 96.3 bits (238), Expect = 1.830e-17
Identity = 55/131 (41.98%), Postives = 72/131 (54.96%), Query Frame = 0
Query:  226 SYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAH 356
            +Y+RVH  P+ FP++   DWK RIVHA  DFVV++KP GVP VPT+DN +++CL     A    A D  S    L +  RLD CT G+VV  R  E     N+L       ++Y   LT   P P G + H
Sbjct:  121 AYVRVHVHPKRFPSAYKVDWKARIVHAAPDFVVINKPAGVPVVPTVDNILESCL-----ACTAQALDEAS---PLLSTHRLDTCTEGLVVLGRKYEFVAAFNKLLGQPGALQKYYRALTKQAP-PTGGLVH 242          
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: A0A1Y1HRB5_KLENI (PseudoU_synth_2 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HRB5_KLENI)

HSP 1 Score: 95.5 bits (236), Expect = 2.380e-17
Identity = 56/147 (38.10%), Postives = 75/147 (51.02%), Query Frame = 0
Query:  225 GSYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAHCCRSKAFDGSRRPRI 371
            G YLRVH  P+ FP     DW+ R++    D+V+LDKP GVP   T+DN V+NC        A    ++  L   L    RLDV T G +V A+     +  N+L  DRKV K Y AL    PP+  G + H  + K++     PRI
Sbjct:  133 GGYLRVHVHPKRFPRCYEVDWRGRVLTETPDYVILDKPAGVPVQGTVDNLVENC--------AACLLEALGLEEPLKVTHRLDVGTEGCLVLAKTPAFLRSFNQLLADRKVHKTYRALAAARPPL--GRLLHWTQPKSY----APRI 265          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGX6_ECTSI1.200e-23878.44PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A835YKX4_9STRA2.830e-5335.33Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A5J4Z0G8_PORPP1.200e-3533.87RNA pseudouridine synthase 6, chloroplastic n=1 Ta... [more]
D7G898_ECTSI8.270e-2881.33Ribosomal large subunit pseudouridine synthase D n... [more]
K7PEZ7_9BACT4.740e-2144.00Pseudouridine synthase n=1 Tax=uncultured bacteriu... [more]
A0A7S0H4S4_9CRYP8.540e-1933.71Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A8J9RE80_9CHLO2.490e-1841.98Probable mitochondrial RNA pseudouridine synthase ... [more]
A0A7S0TTK8_HEMAN2.660e-1837.50Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
I0Z0I0_COCSC1.830e-1741.98Pseudouridine synthase n=1 Tax=Coccomyxa subellips... [more]
A0A1Y1HRB5_KLENI2.380e-1738.10PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 415..435
NoneNo IPR availableGENE3D3.30.2350.10Pseudouridine synthasecoord: 239..406
e-value: 2.2E-22
score: 81.7
NoneNo IPR availableGENE3D3.30.2350.10Pseudouridine synthasecoord: 499..593
e-value: 2.6E-11
score: 45.4
NoneNo IPR availablePIRSRPIRSR606225-1PIRSR606225-1coord: 241..343
e-value: 9.8E-15
score: 52.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..94
NoneNo IPR availablePANTHERPTHR21600:SF52RNA PSEUDOURIDINE SYNTHASE 6, CHLOROPLASTICcoord: 508..554
coord: 155..347
NoneNo IPR availablePANTHERPTHR21600MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASEcoord: 508..554
coord: 155..347
IPR006145Pseudouridine synthase, RsuA/RluA-likePFAMPF00849PseudoU_synth_2coord: 255..528
e-value: 2.2E-21
score: 76.6
IPR006145Pseudouridine synthase, RsuA/RluA-likeCDDcd02869PseudoU_synth_RluA_likecoord: 256..575
e-value: 2.89112E-21
score: 89.7041
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 243..352
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 509..592

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig60contigP-littoralis_Contig60:613936..615741 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig60.149.1mRNA_P-littoralis_Contig60.149.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig60 612928..615939 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig60.149.1 ID=prot_P-littoralis_Contig60.149.1|Name=mRNA_P-littoralis_Contig60.149.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=602bp
MMLNGTLRLLSAAAATASWHRASQAFVGVQLVPRHRSTGASPPSKASSRP
FSSPSPRKPVAHASPPRFVASMTTTSSSTTTSRSAAAMPPSIEQCSAETT
FQGKHRVVHIATPAAPPPWVQAEDGDEDAGAAEERATIAQLVSYFGAVSV
ARGTELVKFGSVYIGEVVDTSWRHPPSKEKQLTVAAARKKAAKSAQQAPF
RGTSFEHMKLRRLHPWESGMFPPHGSYLRVHCDPRMFPASQGTDWKKRIV
HANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRL
HAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVP
VGPVAHCCRSKAFDGSRRPRIYAGFDEELLAGEKWGGAWQDARSMVLLCA
PASGAAAAAAVAGDRAEAEAAARALEESAAGAAARLEAELAVGLGLGAGF
SPEEMQEAAEMAEGALADEGGEGRASSSDAEGAAAMVPGAAAAGGGDGED
GGDGHVPHLCAMELETGRTHQLRLQLAAMGAAIVGDTRYRGVVGRVHRGL
RTDDDASKFGQEPEAIALQAARIEFEWRGATVVYSAERPSWALSDDNGAS
P*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR020103PsdUridine_synth_cat_dom_sf