mRNA_P-littoralis_Contig60.149.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: D8LGX6_ECTSI (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGX6_ECTSI) HSP 1 Score: 677 bits (1746), Expect = 8.070e-233 Identity = 393/501 (78.44%), Postives = 428/501 (85.43%), Query Frame = 1
Query: 475 EQCSAETTFQGKHRVVHIATPAAPPPWVQAEDGDEDAGAAEERATIAQLVSYFGAVSVARGTELVKFGSVYIGEVVDTSWRHPPSKEKQLTVAAARKKAAKSAQQAPFRGTSFEHMKLRRLHPWESGMFPPHGSYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAHCCRSKAFDGSRRPRIYAGFDEELLAGEKWGGAWQDARSMVLLCAPASGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGFSPEEMQEAAEMAEGALADEGGEGRASSSDAEGAAAMVPGXXXXXXXXXEDGGDGHVPHLCAMELETGRTHQLRLQLAAMGAAIVGDTRYRGVVGRVHRGLRTDDDASKFGQEPEAIALQAARIEFEWRGATVVYSAERPSWAL 1977
E CSAETT+QG+HRVVHIATP APPPW++ E+ E E+RATIA+LVS+FGAVS RG ELVKFGSVYIGEVVDT+WRHPPSKEKQ+T+AAARKKA KSA QAPFRGTSFEHM+LRRLHPWESG FPPHG+YLRVHCDPR FPASQ DW KRIVH N DFVV+DKP GVPTVPTIDNGVQNC+FQASLAVAG+ SRSLPP LHAVSRLDVCTSGIVVFARHKEAAKQLNELFR R+VKKRYLALLTPGP VP G +AHCCRSKAFDGSRRPRIYA FDEELLAG+KWGGAWQ+ARS VLLCAPA+G+AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PEE++ AA EG ++G +++ DAE A + GD H PHLCAMELETGRTHQLRLQLAAMG+AIVGDTRYRGVVGRVHRGLR DDD S+FGQEPEAIALQAARIEFEW+G TVV+S +RPSWAL
Sbjct: 24 EGCSAETTYQGEHRVVHIATPGAPPPWLEDEEQGE-----EQRATIAELVSHFGAVSRERGVELVKFGSVYIGEVVDTNWRHPPSKEKQMTIAAARKKALKSADQAPFRGTSFEHMRLRRLHPWESGNFPPHGAYLRVHCDPRTFPASQVMDWSKRIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCVFQASLAVAGMPPGSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARRVKKRYLALLTPGPAVPTGSMAHCCRSKAFDGSRRPRIYADFDEELLAGDKWGGAWQEARSTVLLCAPATGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEEIEAAARGGEGREEEDG----STAPDAEATTAAEA---------AREEGD-HAPHLCAMELETGRTHQLRLQLAAMGSAIVGDTRYRGVVGRVHRGLRVDDDTSRFGQEPEAIALQAARIEFEWQGRTVVFSTDRPSWAL 505
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: A0A835YKX4_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKX4_9STRA) HSP 1 Score: 197 bits (500), Expect = 1.370e-51 Identity = 130/368 (35.33%), Postives = 167/368 (45.38%), Query Frame = 1
Query: 871 GSYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAHCCRSKAFDGSRRPRIYAGFDEELLAGEKWGGAWQDARSMVLLCAPASGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGFSPEEMQEAAEMAEGALADEGGEGRASSSDAEGAAAMVPGXXXXXXXXXEDGGDGHVPHLCAMELETGRTHQLRLQLAAMGAAIVGDTRYRGVVGRVHRGLRTDDDASKFGQEPEAIALQAARIEFEWRGATVVYSAERPSWA 1974
G+YLR+H PR F + DW+ R++HA AD+VV+DKP GVP+VPT DN + L++A A+ G AA LHAVSRLDVCTSG++VFAR AA L+ R V+K Y ++T G VP+G + HCC ++A G +PRIYA FD G+ G W+ A VL SGA+ + L TGRTHQ+RLQLAA+GA IVGD+RY ++G+VH G D FG EPE I L AA +EF+W G V Y+AE P WA
Sbjct: 150 GTYLRLHAAPRRFARAAAADWRARVLHACADYVVIDKPAGVPSVPTTDNAADSALWRARAALGGDAARP------LHAVSRLDVCTSGVLVFARSPAAAAALSGAISARAVRKVY-RVVTTGAEVPLGVLRHCCSTRARTGDAQPRIYAPFDAAKACGD--GSGWRLAELEVLSHDRGSGAS--------------------------------------------------------------------------------------------------------TISLMTGRTHQIRLQLAALGAGIVGDSRYADIIGKVHDGTAASDRTDWFGPEPEEIRLHAAALEFDWGGERVCYTAE-PPWA 403
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: A0A5J4Z0G8_PORPP (RNA pseudouridine synthase 6, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0G8_PORPP) HSP 1 Score: 149 bits (376), Expect = 7.870e-35 Identity = 126/372 (33.87%), Postives = 158/372 (42.47%), Query Frame = 1
Query: 871 GSYLRVHCDPRMFPASQGTDWKKRIVH-ANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGP-PVPV----GPVAHCCRSKAFDGSRRPRIYAGFDEE------LLAGEKW---------GGAWQDARSMVLLCAPASGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGFSPEEMQEAAEMAEGALADEGGEGRASSSDAEGAAAMVPGXXXXXXXXXEDGGDGHVPHLCAMELETGRTHQLRLQLAAMGAAIVGDTRYRGVVGRVHRGLRTDDDASKFGQEPEAIALQAARIEF 1923
G Y R+H +P +P + WK RIV+ + DFV +DKP +P+VPT+ N V+ Q A+ P LHAVSRLDVCTSG++VFARHK AA LNE R+R VKKRY LL PGP P + G V H R+ D +PRIY D E LL E + GGAW A +L + A E+ E M AD G E +EL TGRTHQLRLQ A++G + GD+RYR V GRVHRG+ DD+ FG EP ++L A+ F
Sbjct: 141 GMYFRLHANPARYPDAHAYVWKDRIVYNGDNDFVAVDKPPNLPSVPTLVNVVECARTQVECAL--------ECPAPLHAVSRLDVCTSGVLVFARHKRAAAHLNEQIRNRSVKKRY-TLLVPGPIPREIIQKDGRVLHAARTNLPDNIPKPRIYRLLDLEKDLDAALLQDESYSTPLEAPKIGGAWHVAAMRILTEREMNRA------------------------------------------------ELSEVVTM----QADHAG-------------------IDVRYTEYE------------VELLTGRTHQLRLQFASLGLPLFGDSRYRPVSGRVHRGVPEDDNLDMFGPEPNRVSLCASVFHF 420
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: D7G898_ECTSI (Ribosomal large subunit pseudouridine synthase D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G898_ECTSI) HSP 1 Score: 122 bits (305), Expect = 2.090e-27 Identity = 61/75 (81.33%), Postives = 66/75 (88.00%), Query Frame = 1
Query: 1030 CLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVG 1254
C QASLAVAG++ SRSLPP LHAVSRLDVCTSG+VVFARHK+A KQLNELFR R+VKKRYLALLTPGPPV G
Sbjct: 71 CFQQASLAVAGISPGSRSLPPPLHAVSRLDVCTSGVVVFARHKDATKQLNELFRARRVKKRYLALLTPGPPVSTG 145
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: K7PEZ7_9BACT (Pseudouridine synthase n=1 Tax=uncultured bacterium TaxID=77133 RepID=K7PEZ7_9BACT) HSP 1 Score: 104 bits (259), Expect = 1.010e-20 Identity = 55/125 (44.00%), Postives = 74/125 (59.20%), Query Frame = 1
Query: 871 GSYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPV 1245
G Y+RVH +P+ FP +G DW IVH + FVV++KP G+P T+DN V+N L Q +A+ G L+ RLD SG++V AR +E +Q N L DRK+KKRY AL+T P V
Sbjct: 62 GQYIRVHLNPKRFPV-EGIDWATTIVHRDKAFVVVNKPAGIPVHATLDNQVENLLHQLRVALGGA----------LYVTQRLDTDVSGLIVVARTQEFQRQFNRLLADRKLKKRYRALVTTAPEV 175
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: A0A7S0H4S4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0H4S4_9CRYP) HSP 1 Score: 97.1 bits (240), Expect = 1.720e-18 Identity = 60/178 (33.71%), Postives = 93/178 (52.25%), Query Frame = 1
Query: 871 GSYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAHC-CRSKAFDGSRRPRIYAGFDEELLAGEKWGGAWQDARSMVLLCAP 1401
GSY+RVH P+ F DW R++ + DF+V++KP GVP++ TIDN ++ C+ + + SL P SRLDVCT+G+++FA+ +E N+ +R+ +K Y LL+ G V G V H CR + + RP + + + + WQDA +L C P
Sbjct: 90 GSYVRVHAQPKRFLTVYKMDWNARVICESEDFIVINKPPGVPSLTTIDNAIE-CVMSQVEKIKNI-----SLMP----TSRLDVCTAGVLIFAKTREFCMSTNKAMSERRSEKIY-KLLSEGE-VQTGTVRHLFCRKRKGHKNSRPTLLRAWQDLTSRKDLQEEGWQDAVLEILDCRP 255
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: A0A7S0TTK8_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TTK8_HEMAN) HSP 1 Score: 94.7 bits (234), Expect = 5.140e-18 Identity = 57/152 (37.50%), Postives = 84/152 (55.26%), Query Frame = 1
Query: 865 PHGSYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAHCCRSKAFDGSRRPRIYAG 1320
P GSYLRVH PR FP + DW+KR+VH N+++V+++KPGG+P ++DN + + A L+A+ S+ A+ RLDV T G++ R A + L R R+V+K YLAL + P + G + H R R PR+ G
Sbjct: 93 PQGSYLRVHPSPRRFPVAWTADWQKRLVHVNSNYVIVNKPGGLPCHASLDNAKETT---EACAERALSAEVGSIS----ALHRLDVPTHGLMCLGRTPFFAAHFSRLLRMRRVRKEYLALASAPPQL--GSMVHYMRPS----ERSPRVVRG 231
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: A0A8J9RE80_9CHLO (Probable mitochondrial RNA pseudouridine synthase Rpusd4 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RE80_9CHLO) HSP 1 Score: 99.0 bits (245), Expect = 6.200e-18 Identity = 55/131 (41.98%), Postives = 74/131 (56.49%), Query Frame = 1
Query: 874 SYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAH 1266
+Y+RVH P+ FP + DWK RIVHA DFVV++KP GVP VPT+DN +++CL + A+ S P L + RLD CT G+VV R ++ NEL R +++ LT PP P G H
Sbjct: 127 AYVRVHVHPKRFPNAYKVDWKARIVHAAQDFVVINKPAGVPVVPTVDNILESCLACTAQALG------ESSP--LLSTHRLDTCTEGLVVLGRKRDFVAAFNELLRLPGAVQKFYRALTKSPP-PTGASVH 248
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: I0Z0I0_COCSC (Pseudouridine synthase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z0I0_COCSC) HSP 1 Score: 96.3 bits (238), Expect = 4.460e-17 Identity = 55/131 (41.98%), Postives = 72/131 (54.96%), Query Frame = 1
Query: 874 SYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAH 1266
+Y+RVH P+ FP++ DWK RIVHA DFVV++KP GVP VPT+DN +++CL A A D S L + RLD CT G+VV R E N+L ++Y LT P P G + H
Sbjct: 121 AYVRVHVHPKRFPSAYKVDWKARIVHAAPDFVVINKPAGVPVVPTVDNILESCL-----ACTAQALDEAS---PLLSTHRLDTCTEGLVVLGRKYEFVAAFNKLLGQPGALQKYYRALTKQAP-PTGGLVH 242
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: A0A1Y1HRB5_KLENI (PseudoU_synth_2 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HRB5_KLENI) HSP 1 Score: 95.5 bits (236), Expect = 5.570e-17 Identity = 56/147 (38.10%), Postives = 75/147 (51.02%), Query Frame = 1
Query: 871 GSYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAHCCRSKAFDGSRRPRI 1311
G YLRVH P+ FP DW+ R++ D+V+LDKP GVP T+DN V+NC A ++ L L RLDV T G +V A+ + N+L DRKV K Y AL PP+ G + H + K++ PRI
Sbjct: 133 GGYLRVHVHPKRFPRCYEVDWRGRVLTETPDYVILDKPAGVPVQGTVDNLVENC--------AACLLEALGLEEPLKVTHRLDVGTEGCLVLAKTPAFLRSFNQLLADRKVHKTYRALAAARPPL--GRLLHWTQPKSY----APRI 265 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig60.149.1 >prot_P-littoralis_Contig60.149.1 ID=prot_P-littoralis_Contig60.149.1|Name=mRNA_P-littoralis_Contig60.149.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=602bp MMLNGTLRLLSAAAATASWHRASQAFVGVQLVPRHRSTGASPPSKASSRPback to top mRNA from alignment at P-littoralis_Contig60:612928..615939- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig60.149.1 ID=mRNA_P-littoralis_Contig60.149.1|Name=mRNA_P-littoralis_Contig60.149.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3012bp|location=Sequence derived from alignment at P-littoralis_Contig60:612928..615939- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig60:612928..615939- >mRNA_P-littoralis_Contig60.149.1 ID=mRNA_P-littoralis_Contig60.149.1|Name=mRNA_P-littoralis_Contig60.149.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1806bp|location=Sequence derived from alignment at P-littoralis_Contig60:612928..615939- (Pylaiella littoralis U1_48)back to top |