mRNA_P-littoralis_Contig60.149.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig60.149.1
Unique NamemRNA_P-littoralis_Contig60.149.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: D8LGX6_ECTSI (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGX6_ECTSI)

HSP 1 Score: 677 bits (1746), Expect = 8.070e-233
Identity = 393/501 (78.44%), Postives = 428/501 (85.43%), Query Frame = 1
Query:  475 EQCSAETTFQGKHRVVHIATPAAPPPWVQAEDGDEDAGAAEERATIAQLVSYFGAVSVARGTELVKFGSVYIGEVVDTSWRHPPSKEKQLTVAAARKKAAKSAQQAPFRGTSFEHMKLRRLHPWESGMFPPHGSYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAHCCRSKAFDGSRRPRIYAGFDEELLAGEKWGGAWQDARSMVLLCAPASGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGFSPEEMQEAAEMAEGALADEGGEGRASSSDAEGAAAMVPGXXXXXXXXXEDGGDGHVPHLCAMELETGRTHQLRLQLAAMGAAIVGDTRYRGVVGRVHRGLRTDDDASKFGQEPEAIALQAARIEFEWRGATVVYSAERPSWAL 1977
            E CSAETT+QG+HRVVHIATP APPPW++ E+  E     E+RATIA+LVS+FGAVS  RG ELVKFGSVYIGEVVDT+WRHPPSKEKQ+T+AAARKKA KSA QAPFRGTSFEHM+LRRLHPWESG FPPHG+YLRVHCDPR FPASQ  DW KRIVH N DFVV+DKP GVPTVPTIDNGVQNC+FQASLAVAG+   SRSLPP LHAVSRLDVCTSGIVVFARHKEAAKQLNELFR R+VKKRYLALLTPGP VP G +AHCCRSKAFDGSRRPRIYA FDEELLAG+KWGGAWQ+ARS VLLCAPA+G+AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    PEE++ AA   EG   ++G    +++ DAE   A              + GD H PHLCAMELETGRTHQLRLQLAAMG+AIVGDTRYRGVVGRVHRGLR DDD S+FGQEPEAIALQAARIEFEW+G TVV+S +RPSWAL
Sbjct:   24 EGCSAETTYQGEHRVVHIATPGAPPPWLEDEEQGE-----EQRATIAELVSHFGAVSRERGVELVKFGSVYIGEVVDTNWRHPPSKEKQMTIAAARKKALKSADQAPFRGTSFEHMRLRRLHPWESGNFPPHGAYLRVHCDPRTFPASQVMDWSKRIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCVFQASLAVAGMPPGSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARRVKKRYLALLTPGPAVPTGSMAHCCRSKAFDGSRRPRIYADFDEELLAGDKWGGAWQEARSTVLLCAPATGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEEIEAAARGGEGREEEDG----STAPDAEATTAAEA---------AREEGD-HAPHLCAMELETGRTHQLRLQLAAMGSAIVGDTRYRGVVGRVHRGLRVDDDTSRFGQEPEAIALQAARIEFEWQGRTVVFSTDRPSWAL 505          
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: A0A835YKX4_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKX4_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.370e-51
Identity = 130/368 (35.33%), Postives = 167/368 (45.38%), Query Frame = 1
Query:  871 GSYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAHCCRSKAFDGSRRPRIYAGFDEELLAGEKWGGAWQDARSMVLLCAPASGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGFSPEEMQEAAEMAEGALADEGGEGRASSSDAEGAAAMVPGXXXXXXXXXEDGGDGHVPHLCAMELETGRTHQLRLQLAAMGAAIVGDTRYRGVVGRVHRGLRTDDDASKFGQEPEAIALQAARIEFEWRGATVVYSAERPSWA 1974
            G+YLR+H  PR F  +   DW+ R++HA AD+VV+DKP GVP+VPT DN   + L++A  A+ G AA        LHAVSRLDVCTSG++VFAR   AA  L+     R V+K Y  ++T G  VP+G + HCC ++A  G  +PRIYA FD     G+  G  W+ A   VL     SGA+                                                                                                         + L TGRTHQ+RLQLAA+GA IVGD+RY  ++G+VH G    D    FG EPE I L AA +EF+W G  V Y+AE P WA
Sbjct:  150 GTYLRLHAAPRRFARAAAADWRARVLHACADYVVIDKPAGVPSVPTTDNAADSALWRARAALGGDAARP------LHAVSRLDVCTSGVLVFARSPAAAAALSGAISARAVRKVY-RVVTTGAEVPLGVLRHCCSTRARTGDAQPRIYAPFDAAKACGD--GSGWRLAELEVLSHDRGSGAS--------------------------------------------------------------------------------------------------------TISLMTGRTHQIRLQLAALGAGIVGDSRYADIIGKVHDGTAASDRTDWFGPEPEEIRLHAAALEFDWGGERVCYTAE-PPWA 403          
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: A0A5J4Z0G8_PORPP (RNA pseudouridine synthase 6, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0G8_PORPP)

HSP 1 Score: 149 bits (376), Expect = 7.870e-35
Identity = 126/372 (33.87%), Postives = 158/372 (42.47%), Query Frame = 1
Query:  871 GSYLRVHCDPRMFPASQGTDWKKRIVH-ANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGP-PVPV----GPVAHCCRSKAFDGSRRPRIYAGFDEE------LLAGEKW---------GGAWQDARSMVLLCAPASGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGFSPEEMQEAAEMAEGALADEGGEGRASSSDAEGAAAMVPGXXXXXXXXXEDGGDGHVPHLCAMELETGRTHQLRLQLAAMGAAIVGDTRYRGVVGRVHRGLRTDDDASKFGQEPEAIALQAARIEF 1923
            G Y R+H +P  +P +    WK RIV+  + DFV +DKP  +P+VPT+ N V+    Q   A+          P  LHAVSRLDVCTSG++VFARHK AA  LNE  R+R VKKRY  LL PGP P  +    G V H  R+   D   +PRIY   D E      LL  E +         GGAW  A   +L     + A                                                E+ E   M     AD  G                           E            +EL TGRTHQLRLQ A++G  + GD+RYR V GRVHRG+  DD+   FG EP  ++L A+   F
Sbjct:  141 GMYFRLHANPARYPDAHAYVWKDRIVYNGDNDFVAVDKPPNLPSVPTLVNVVECARTQVECAL--------ECPAPLHAVSRLDVCTSGVLVFARHKRAAAHLNEQIRNRSVKKRY-TLLVPGPIPREIIQKDGRVLHAARTNLPDNIPKPRIYRLLDLEKDLDAALLQDESYSTPLEAPKIGGAWHVAAMRILTEREMNRA------------------------------------------------ELSEVVTM----QADHAG-------------------IDVRYTEYE------------VELLTGRTHQLRLQFASLGLPLFGDSRYRPVSGRVHRGVPEDDNLDMFGPEPNRVSLCASVFHF 420          
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: D7G898_ECTSI (Ribosomal large subunit pseudouridine synthase D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G898_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.090e-27
Identity = 61/75 (81.33%), Postives = 66/75 (88.00%), Query Frame = 1
Query: 1030 CLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVG 1254
            C  QASLAVAG++  SRSLPP LHAVSRLDVCTSG+VVFARHK+A KQLNELFR R+VKKRYLALLTPGPPV  G
Sbjct:   71 CFQQASLAVAGISPGSRSLPPPLHAVSRLDVCTSGVVVFARHKDATKQLNELFRARRVKKRYLALLTPGPPVSTG 145          
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: K7PEZ7_9BACT (Pseudouridine synthase n=1 Tax=uncultured bacterium TaxID=77133 RepID=K7PEZ7_9BACT)

HSP 1 Score: 104 bits (259), Expect = 1.010e-20
Identity = 55/125 (44.00%), Postives = 74/125 (59.20%), Query Frame = 1
Query:  871 GSYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPV 1245
            G Y+RVH +P+ FP  +G DW   IVH +  FVV++KP G+P   T+DN V+N L Q  +A+ G           L+   RLD   SG++V AR +E  +Q N L  DRK+KKRY AL+T  P V
Sbjct:   62 GQYIRVHLNPKRFPV-EGIDWATTIVHRDKAFVVVNKPAGIPVHATLDNQVENLLHQLRVALGGA----------LYVTQRLDTDVSGLIVVARTQEFQRQFNRLLADRKLKKRYRALVTTAPEV 175          
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: A0A7S0H4S4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0H4S4_9CRYP)

HSP 1 Score: 97.1 bits (240), Expect = 1.720e-18
Identity = 60/178 (33.71%), Postives = 93/178 (52.25%), Query Frame = 1
Query:  871 GSYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAHC-CRSKAFDGSRRPRIYAGFDEELLAGEKWGGAWQDARSMVLLCAP 1401
            GSY+RVH  P+ F      DW  R++  + DF+V++KP GVP++ TIDN ++ C+      +  +     SL P     SRLDVCT+G+++FA+ +E     N+   +R+ +K Y  LL+ G  V  G V H  CR +    + RP +   + +     +     WQDA   +L C P
Sbjct:   90 GSYVRVHAQPKRFLTVYKMDWNARVICESEDFIVINKPPGVPSLTTIDNAIE-CVMSQVEKIKNI-----SLMP----TSRLDVCTAGVLIFAKTREFCMSTNKAMSERRSEKIY-KLLSEGE-VQTGTVRHLFCRKRKGHKNSRPTLLRAWQDLTSRKDLQEEGWQDAVLEILDCRP 255          
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: A0A7S0TTK8_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TTK8_HEMAN)

HSP 1 Score: 94.7 bits (234), Expect = 5.140e-18
Identity = 57/152 (37.50%), Postives = 84/152 (55.26%), Query Frame = 1
Query:  865 PHGSYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAHCCRSKAFDGSRRPRIYAG 1320
            P GSYLRVH  PR FP +   DW+KR+VH N+++V+++KPGG+P   ++DN  +      + A   L+A+  S+     A+ RLDV T G++   R    A   + L R R+V+K YLAL +  P +  G + H  R       R PR+  G
Sbjct:   93 PQGSYLRVHPSPRRFPVAWTADWQKRLVHVNSNYVIVNKPGGLPCHASLDNAKETT---EACAERALSAEVGSIS----ALHRLDVPTHGLMCLGRTPFFAAHFSRLLRMRRVRKEYLALASAPPQL--GSMVHYMRPS----ERSPRVVRG 231          
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: A0A8J9RE80_9CHLO (Probable mitochondrial RNA pseudouridine synthase Rpusd4 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RE80_9CHLO)

HSP 1 Score: 99.0 bits (245), Expect = 6.200e-18
Identity = 55/131 (41.98%), Postives = 74/131 (56.49%), Query Frame = 1
Query:  874 SYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAH 1266
            +Y+RVH  P+ FP +   DWK RIVHA  DFVV++KP GVP VPT+DN +++CL   + A+        S P  L +  RLD CT G+VV  R ++     NEL R     +++   LT  PP P G   H
Sbjct:  127 AYVRVHVHPKRFPNAYKVDWKARIVHAAQDFVVINKPAGVPVVPTVDNILESCLACTAQALG------ESSP--LLSTHRLDTCTEGLVVLGRKRDFVAAFNELLRLPGAVQKFYRALTKSPP-PTGASVH 248          
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: I0Z0I0_COCSC (Pseudouridine synthase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z0I0_COCSC)

HSP 1 Score: 96.3 bits (238), Expect = 4.460e-17
Identity = 55/131 (41.98%), Postives = 72/131 (54.96%), Query Frame = 1
Query:  874 SYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAH 1266
            +Y+RVH  P+ FP++   DWK RIVHA  DFVV++KP GVP VPT+DN +++CL     A    A D  S    L +  RLD CT G+VV  R  E     N+L       ++Y   LT   P P G + H
Sbjct:  121 AYVRVHVHPKRFPSAYKVDWKARIVHAAPDFVVINKPAGVPVVPTVDNILESCL-----ACTAQALDEAS---PLLSTHRLDTCTEGLVVLGRKYEFVAAFNKLLGQPGALQKYYRALTKQAP-PTGGLVH 242          
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Match: A0A1Y1HRB5_KLENI (PseudoU_synth_2 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HRB5_KLENI)

HSP 1 Score: 95.5 bits (236), Expect = 5.570e-17
Identity = 56/147 (38.10%), Postives = 75/147 (51.02%), Query Frame = 1
Query:  871 GSYLRVHCDPRMFPASQGTDWKKRIVHANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVPVGPVAHCCRSKAFDGSRRPRI 1311
            G YLRVH  P+ FP     DW+ R++    D+V+LDKP GVP   T+DN V+NC        A    ++  L   L    RLDV T G +V A+     +  N+L  DRKV K Y AL    PP+  G + H  + K++     PRI
Sbjct:  133 GGYLRVHVHPKRFPRCYEVDWRGRVLTETPDYVILDKPAGVPVQGTVDNLVENC--------AACLLEALGLEEPLKVTHRLDVGTEGCLVLAKTPAFLRSFNQLLADRKVHKTYRALAAARPPL--GRLLHWTQPKSY----APRI 265          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig60.149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGX6_ECTSI8.070e-23378.44PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A835YKX4_9STRA1.370e-5135.33Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A5J4Z0G8_PORPP7.870e-3533.87RNA pseudouridine synthase 6, chloroplastic n=1 Ta... [more]
D7G898_ECTSI2.090e-2781.33Ribosomal large subunit pseudouridine synthase D n... [more]
K7PEZ7_9BACT1.010e-2044.00Pseudouridine synthase n=1 Tax=uncultured bacteriu... [more]
A0A7S0H4S4_9CRYP1.720e-1833.71Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S0TTK8_HEMAN5.140e-1837.50Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A8J9RE80_9CHLO6.200e-1841.98Probable mitochondrial RNA pseudouridine synthase ... [more]
I0Z0I0_COCSC4.460e-1741.98Pseudouridine synthase n=1 Tax=Coccomyxa subellips... [more]
A0A1Y1HRB5_KLENI5.570e-1738.10PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig60contigP-littoralis_Contig60:612928..615939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LGX6
PFAMsPseudoU_synth_2
Model size3012
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0003824,GO:0006139,GO:0006206,GO:0006213,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009119,GO:0009451,GO:0009982,GO:0009987,GO:0016070,GO:0016853,GO:0016866,GO:0018130,GO:0019438,GO:0019858,GO:0034641,GO:0034654,GO:0043094,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046087,GO:0046131,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090304,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657
Exons1
Evalue1.96e-239
EggNOG OGsCOG0564@1|root,KOG1919@2759|Eukaryota
Ec32 ortholog descriptionPseudouridine synthase, catalytic domain
Ec32 orthologEc-14_001540.1
Descriptionpseudouridine synthase activity
Cds size1806
COG categoryJ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791252.8030865-UTR-P-littoralis_Contig60:612927..6139351680791252.8030865-UTR-P-littoralis_Contig60:612927..613935Pylaiella littoralis U1_48UTRP-littoralis_Contig60 612928..613935 -
1680791252.8245652-UTR-P-littoralis_Contig60:615741..6159391680791252.8245652-UTR-P-littoralis_Contig60:615741..615939Pylaiella littoralis U1_48UTRP-littoralis_Contig60 615742..615939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791252.8155782-CDS-P-littoralis_Contig60:613935..6157411680791252.8155782-CDS-P-littoralis_Contig60:613935..615741Pylaiella littoralis U1_48CDSP-littoralis_Contig60 613936..615741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig60.149.1prot_P-littoralis_Contig60.149.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig60 613936..615741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig60.149.1

>prot_P-littoralis_Contig60.149.1 ID=prot_P-littoralis_Contig60.149.1|Name=mRNA_P-littoralis_Contig60.149.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=602bp
MMLNGTLRLLSAAAATASWHRASQAFVGVQLVPRHRSTGASPPSKASSRP
FSSPSPRKPVAHASPPRFVASMTTTSSSTTTSRSAAAMPPSIEQCSAETT
FQGKHRVVHIATPAAPPPWVQAEDGDEDAGAAEERATIAQLVSYFGAVSV
ARGTELVKFGSVYIGEVVDTSWRHPPSKEKQLTVAAARKKAAKSAQQAPF
RGTSFEHMKLRRLHPWESGMFPPHGSYLRVHCDPRMFPASQGTDWKKRIV
HANADFVVLDKPGGVPTVPTIDNGVQNCLFQASLAVAGLAADSRSLPPRL
HAVSRLDVCTSGIVVFARHKEAAKQLNELFRDRKVKKRYLALLTPGPPVP
VGPVAHCCRSKAFDGSRRPRIYAGFDEELLAGEKWGGAWQDARSMVLLCA
PASGAAAAAAVAGDRAEAEAAARALEESAAGAAARLEAELAVGLGLGAGF
SPEEMQEAAEMAEGALADEGGEGRASSSDAEGAAAMVPGAAAAGGGDGED
GGDGHVPHLCAMELETGRTHQLRLQLAAMGAAIVGDTRYRGVVGRVHRGL
RTDDDASKFGQEPEAIALQAARIEFEWRGATVVYSAERPSWALSDDNGAS
P*
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mRNA from alignment at P-littoralis_Contig60:612928..615939-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig60.149.1 ID=mRNA_P-littoralis_Contig60.149.1|Name=mRNA_P-littoralis_Contig60.149.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3012bp|location=Sequence derived from alignment at P-littoralis_Contig60:612928..615939- (Pylaiella littoralis U1_48)
CTTGTATACGACGCACAACGCAACACACGCCCACCGAATCTGTGTCTCTC CTCCGCCCCCACCCTACTCTCCAACAGCTCTCTGGCCTGCACCTGTCCCT TCGATTGATATTCCTCGAGACGCTTAAGCCACACAGAGCGGAAACAGACA GGCTGTGCCTGTTGAATCTGCAGTTGCATTACTCCACTGCCGTATGACAT GATGCTGAACGGAACACTGCGGCTGCTAAGTGCTGCTGCTGCCACTGCTT CTTGGCACCGAGCAAGCCAGGCTTTCGTCGGGGTTCAGCTTGTACCTCGT CACCGCTCAACAGGAGCATCGCCACCCTCCAAAGCTTCTTCGCGGCCGTT TTCAAGTCCATCGCCGAGGAAACCGGTGGCGCACGCATCTCCCCCGCGCT TCGTCGCTAGCATGACCACCACCAGCAGCAGCACCACCACGAGCAGATCG GCGGCAGCAATGCCACCATCGATTGAGCAGTGCTCGGCGGAGACTACTTT TCAGGGGAAGCACCGTGTGGTCCACATCGCAACACCAGCAGCGCCTCCGC CCTGGGTGCAGGCGGAGGACGGCGACGAAGACGCCGGCGCCGCCGAGGAA CGGGCGACCATCGCCCAGCTCGTGTCCTACTTCGGAGCGGTGAGCGTGGC GCGCGGGACAGAGCTTGTCAAGTTCGGCAGCGTCTACATCGGCGAAGTTG TCGACACCAGCTGGAGGCACCCGCCCAGCAAAGAGAAGCAGCTGACGGTC GCAGCGGCGAGAAAAAAAGCGGCGAAATCGGCCCAACAGGCGCCCTTCCG AGGCACTTCCTTCGAACACATGAAGCTCCGGCGTCTCCACCCCTGGGAGA GCGGCATGTTCCCACCCCACGGCTCGTACCTCCGAGTCCACTGCGACCCG CGCATGTTTCCGGCCTCGCAGGGCACGGACTGGAAGAAACGAATCGTTCA CGCGAACGCCGACTTCGTCGTCCTGGACAAGCCGGGCGGGGTGCCGACCG TCCCGACCATCGACAACGGCGTGCAGAACTGTTTGTTCCAAGCGAGCCTG GCGGTAGCCGGCCTGGCCGCCGATTCGCGCTCGCTGCCGCCCCGCTTGCA CGCGGTGTCGCGGCTGGACGTCTGCACCTCAGGGATTGTCGTGTTCGCCA GGCACAAGGAGGCGGCGAAGCAGCTGAACGAGCTGTTCCGCGACCGGAAG GTGAAGAAGCGCTACCTGGCCCTGCTCACGCCCGGCCCGCCCGTACCGGT CGGGCCGGTGGCGCACTGCTGTCGCTCCAAGGCCTTCGACGGGTCTCGCC GACCGAGAATATACGCGGGCTTCGACGAGGAGCTGCTGGCGGGCGAAAAA TGGGGCGGCGCCTGGCAGGACGCGCGATCGATGGTCTTGCTGTGCGCGCC GGCGTCCGGCGCAGCCGCCGCCGCCGCTGTGGCCGGTGACCGCGCGGAGG CGGAGGCGGCCGCGAGAGCCCTGGAAGAGTCGGCGGCGGGCGCAGCAGCG AGGCTAGAGGCGGAGCTGGCGGTGGGGCTGGGACTAGGCGCGGGGTTCTC GCCGGAAGAAATGCAGGAGGCTGCGGAAATGGCGGAGGGCGCGCTCGCGG ACGAAGGGGGGGAGGGTAGAGCGTCATCTTCCGACGCGGAAGGAGCAGCA GCGATGGTGCCAGGGGCGGCCGCAGCAGGAGGAGGGGACGGAGAGGATGG CGGTGATGGCCATGTCCCGCACCTCTGCGCCATGGAACTGGAGACGGGTC GAACGCACCAGCTGCGTCTGCAGCTGGCGGCGATGGGGGCGGCAATAGTG GGCGACACGCGATATCGCGGAGTAGTCGGAAGGGTGCACCGCGGGCTCAG GACCGACGACGACGCGTCCAAGTTCGGGCAAGAGCCGGAGGCGATCGCGC TGCAGGCGGCGCGGATAGAGTTCGAGTGGCGAGGTGCCACGGTCGTCTAC TCCGCCGAACGGCCGTCGTGGGCGCTGTCAGACGATAATGGAGCGTCACC TTAACGACGAGGGTGGCTGGTGGGGTTGTCCCGCTAATGAAAGAGGTGGG GGGCTCGGGTTGCTTGCTAAACTAGCGATGACCGGCACCGTGGTATTGTC CGGAAGTTGTAGGGGCTCGTGGAACGGGCCAGATTTTTGTGGCGACAAGT GTGATAAATGACTCAGGGGGGGCGGCTGACATTATACTGGAGAAGTTGAC CAAAAGGGGTATGATAGCATACCATGATTTATTGTTTTTTCGTTCGCGTG GCGTTGCGTGGGATCAATATCCTTCTGAACGCCTCTTTTTTTGTCGTGTG TGTGCTTGTGTGTGTTTGTGTGTTTTGGGTGTGTTTTGGGTACGTATATG CACATAATGCCGACGGTTTTGGCCATGAATATGCGTACGACGAAGAAAAG AAGCCGTTCCAGATGTTCCGGGAGTTTTATAGTTGTATCGCAGTGTGCTG TCCGCTGGGAAGCAGCCTTTCCCCTTTAAGACGCGAACAAACGATGTAGT AATCACGCCGCCCTCCTCTTCGATAGACTTTTGTGCTGGCAGTAGGCGTA TGCCGCCCCATCGTGCAAGCAAGCCCACACGAGATAGAGGCTGACTCCGG GTGAAAGGAAGGAAAGCAGGCGCGTCAAACGCTCCGTGCGTGCGTCCGTG TGTTCCTTGTTCGCATCTTGTTCTTGGGTATGATGTTGTAAAGCCCCTCC TACGTAGATGCTCGAACGGGCGGGAGGGGTCGGGGGGCGGCTCTGCTTTG CGACGCACCGCTGACCCTTCTCTGGTCAACGCTGCGTGCCTCTTGCCCCG GCGCGGCACGGAGCATATGCTCCACGGGCTGTTTTGCCGAAACTTTATCA TCGACAATTGTCTGCTGTAGCGAGAGCAGTAAAGCTGAGAACAGCAGCAA CAGCAGCAGCAATATTTTTTCAGAGGTTCAGAACTCCGGATAGTAAAGAT GGAACGATGTTTGAAGACTGAGCATGTAAGAGAAGAAGGTCGTATCCTGC TGTTCATTGCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig60:612928..615939-

>mRNA_P-littoralis_Contig60.149.1 ID=mRNA_P-littoralis_Contig60.149.1|Name=mRNA_P-littoralis_Contig60.149.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1806bp|location=Sequence derived from alignment at P-littoralis_Contig60:612928..615939- (Pylaiella littoralis U1_48)
ATGATGCTGAACGGAACACTGCGGCTGCTAAGTGCTGCTGCTGCCACTGC
TTCTTGGCACCGAGCAAGCCAGGCTTTCGTCGGGGTTCAGCTTGTACCTC
GTCACCGCTCAACAGGAGCATCGCCACCCTCCAAAGCTTCTTCGCGGCCG
TTTTCAAGTCCATCGCCGAGGAAACCGGTGGCGCACGCATCTCCCCCGCG
CTTCGTCGCTAGCATGACCACCACCAGCAGCAGCACCACCACGAGCAGAT
CGGCGGCAGCAATGCCACCATCGATTGAGCAGTGCTCGGCGGAGACTACT
TTTCAGGGGAAGCACCGTGTGGTCCACATCGCAACACCAGCAGCGCCTCC
GCCCTGGGTGCAGGCGGAGGACGGCGACGAAGACGCCGGCGCCGCCGAGG
AACGGGCGACCATCGCCCAGCTCGTGTCCTACTTCGGAGCGGTGAGCGTG
GCGCGCGGGACAGAGCTTGTCAAGTTCGGCAGCGTCTACATCGGCGAAGT
TGTCGACACCAGCTGGAGGCACCCGCCCAGCAAAGAGAAGCAGCTGACGG
TCGCAGCGGCGAGAAAAAAAGCGGCGAAATCGGCCCAACAGGCGCCCTTC
CGAGGCACTTCCTTCGAACACATGAAGCTCCGGCGTCTCCACCCCTGGGA
GAGCGGCATGTTCCCACCCCACGGCTCGTACCTCCGAGTCCACTGCGACC
CGCGCATGTTTCCGGCCTCGCAGGGCACGGACTGGAAGAAACGAATCGTT
CACGCGAACGCCGACTTCGTCGTCCTGGACAAGCCGGGCGGGGTGCCGAC
CGTCCCGACCATCGACAACGGCGTGCAGAACTGTTTGTTCCAAGCGAGCC
TGGCGGTAGCCGGCCTGGCCGCCGATTCGCGCTCGCTGCCGCCCCGCTTG
CACGCGGTGTCGCGGCTGGACGTCTGCACCTCAGGGATTGTCGTGTTCGC
CAGGCACAAGGAGGCGGCGAAGCAGCTGAACGAGCTGTTCCGCGACCGGA
AGGTGAAGAAGCGCTACCTGGCCCTGCTCACGCCCGGCCCGCCCGTACCG
GTCGGGCCGGTGGCGCACTGCTGTCGCTCCAAGGCCTTCGACGGGTCTCG
CCGACCGAGAATATACGCGGGCTTCGACGAGGAGCTGCTGGCGGGCGAAA
AATGGGGCGGCGCCTGGCAGGACGCGCGATCGATGGTCTTGCTGTGCGCG
CCGGCGTCCGGCGCAGCCGCCGCCGCCGCTGTGGCCGGTGACCGCGCGGA
GGCGGAGGCGGCCGCGAGAGCCCTGGAAGAGTCGGCGGCGGGCGCAGCAG
CGAGGCTAGAGGCGGAGCTGGCGGTGGGGCTGGGACTAGGCGCGGGGTTC
TCGCCGGAAGAAATGCAGGAGGCTGCGGAAATGGCGGAGGGCGCGCTCGC
GGACGAAGGGGGGGAGGGTAGAGCGTCATCTTCCGACGCGGAAGGAGCAG
CAGCGATGGTGCCAGGGGCGGCCGCAGCAGGAGGAGGGGACGGAGAGGAT
GGCGGTGATGGCCATGTCCCGCACCTCTGCGCCATGGAACTGGAGACGGG
TCGAACGCACCAGCTGCGTCTGCAGCTGGCGGCGATGGGGGCGGCAATAG
TGGGCGACACGCGATATCGCGGAGTAGTCGGAAGGGTGCACCGCGGGCTC
AGGACCGACGACGACGCGTCCAAGTTCGGGCAAGAGCCGGAGGCGATCGC
GCTGCAGGCGGCGCGGATAGAGTTCGAGTGGCGAGGTGCCACGGTCGTCT
ACTCCGCCGAACGGCCGTCGTGGGCGCTGTCAGACGATAATGGAGCGTCA
CCTTAA
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