mRNA_P-littoralis_Contig116.77.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig116.77.1
Unique NamemRNA_P-littoralis_Contig116.77.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig116.77.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.180e-11
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = -3 
Query:  263 ELYGVFVRSRKEANMIHLTYPSKVATLSSVRSRVLYYIDGWLVSKVWQYQFRKLV 427
            ELYGVFVR +KEAN+I L+YP K   ++  R++VLYYI GWL+SKVW +  R+ +
Sbjct:  170 ELYGVFVRKKKEANLIKLSYPDKKTRVTKPRAKVLYYISGWLLSKVWTHVRRQKI 224
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BLAST of mRNA_P-littoralis_Contig116.77.1 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 3.740e-10
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = -3 
Query:  263 ELYGVFVRSRKEANMIHLTYPSKVATLSSVRSRVLYYIDGWLVSKVWQYQFRKLV 427
            ELYGVFVR +KEAN+I L+YP     ++  R++VLYYI GWL+SK W +  R+ +
Sbjct:  112 ELYGVFVRKKKEANLIKLSYPDNKTRVTKPRAKVLYYISGWLLSKDWAHVRRQKI 166
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig116.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVM7_ECTSI1.180e-1156.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5R0_ECTSI3.740e-1052.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig116contigP-littoralis_Contig116:291748..292418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size429
Hectar predicted targeting categoryother localisation
Exons2
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789477.7003672-UTR-P-littoralis_Contig116:291747..2917661680789477.7003672-UTR-P-littoralis_Contig116:291747..291766Pylaiella littoralis U1_48UTRP-littoralis_Contig116 291748..291766 +
1680789477.731721-UTR-P-littoralis_Contig116:292332..2924181680789477.731721-UTR-P-littoralis_Contig116:292332..292418Pylaiella littoralis U1_48UTRP-littoralis_Contig116 292333..292418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789477.7132695-CDS-P-littoralis_Contig116:291766..2919431680789477.7132695-CDS-P-littoralis_Contig116:291766..291943Pylaiella littoralis U1_48CDSP-littoralis_Contig116 291767..291943 +
1680789477.7234676-CDS-P-littoralis_Contig116:292185..2923321680789477.7234676-CDS-P-littoralis_Contig116:292185..292332Pylaiella littoralis U1_48CDSP-littoralis_Contig116 292186..292332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig116.77.1prot_P-littoralis_Contig116.77.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig116 291767..292332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig116.77.1

>prot_P-littoralis_Contig116.77.1 ID=prot_P-littoralis_Contig116.77.1|Name=mRNA_P-littoralis_Contig116.77.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
MDSAVTPERGGAPPLPVPTPPVHTAPTPTDSARRLEASRIQRLRTNRGEG
VGTSPASPEAARSMGASGFAASEFPDLRWKEHQLSELVLPHLAHEPPVYV
IQDSRPH*
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mRNA from alignment at P-littoralis_Contig116:291748..292418+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig116.77.1 ID=mRNA_P-littoralis_Contig116.77.1|Name=mRNA_P-littoralis_Contig116.77.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=671bp|location=Sequence derived from alignment at P-littoralis_Contig116:291748..292418+ (Pylaiella littoralis U1_48)
CTTCCTGCAGGTCGCGACAATGGACAGTGCGGTGACCCCGGAGAGGGGTG
GTGCCCCTCCGCTTCCAGTACCCACGCCTCCGGTGCATACAGCACCCACG
CCGACCGACAGCGCCAGACGGCTAGAAGCGAGCAGGATCCAGAGGCTCAG
GACGAACCGTGGCGAAGGAGTGGGGACTTCCCCTGCGAGCCCCGAGGTGA
CTGTTCGTATTGGGCAAGAAATGAACCCCCAAACCTAGCGTCTTTTCTTG
TTTTCTCGACATGAACTGTCATATCAAATGTTAGCCGTAGGGTTGCCTGC
TGCTTGAAGTTGGAAGGCTCGAAGGTAAGCTTAGGATATTGGCTTACCAC
TCGCGTGCCCGGTTTCTTTTGTCTCCGTATCGTAACTGCCACTTCTTCCA
CACTTTTTCCTGCTGCCCATACGTTGTCGACTTAGCAGGCTGCCAGGTCC
ATGGGGGCAAGCGGCTTCGCCGCCAGTGAGTTTCCCGACTTGAGATGGAA
AGAACACCAACTTTCTGAACTGGTACTGCCACACCTTGCTCACGAGCCAC
CCGTCTATGTAATACAAGACTCTCGACCTCACTGAGGAAAGCGTAGCTAC
CTTGCTCGGGTAGGTGAGGTGGATCATGTTGGCCTCTTTCCTAGACCGCA
CAAACACCCCGTACAGCTCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig116:291748..292418+

>mRNA_P-littoralis_Contig116.77.1 ID=mRNA_P-littoralis_Contig116.77.1|Name=mRNA_P-littoralis_Contig116.77.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig116:291748..292418+ (Pylaiella littoralis U1_48)
ATGGACAGTGCGGTGACCCCGGAGAGGGGTGGTGCCCCTCCGCTTCCAGT
ACCCACGCCTCCGGTGCATACAGCACCCACGCCGACCGACAGCGCCAGAC
GGCTAGAAGCGAGCAGGATCCAGAGGCTCAGGACGAACCGTGGCGAAGGA
GTGGGGACTTCCCCTGCGAGCCCCGAGGCTGCCAGGTCCATGGGGGCAAG
CGGCTTCGCCGCCAGTGAGTTTCCCGACTTGAGATGGAAAGAACACCAAC
TTTCTGAACTGGTACTGCCACACCTTGCTCACGAGCCACCCGTCTATGTA
ATACAAGACTCTCGACCTCACTGA
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