mRNA_P-littoralis_Contig1159.11.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1159.11.1 vs. uniprot
Match: A0A6H5K9N8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9N8_9PHAE) HSP 1 Score: 181 bits (460), Expect = 8.510e-50 Identity = 133/317 (41.96%), Postives = 162/317 (51.10%), Query Frame = 3
Query: 27 EEVEFVGNQIRPMQAHDEAASCGR*IKEQPSCR--PMVTQLLSQFVTLTSWGELDA**STCLPVLVDIQPTLCQVLNITAAVIVTTPQ--SSASLTW*RELITILSM-------------------FQA*LWWRTWPTMTPSTEWLGA--------------------------------KQRQYILGGAIKRDWRTCGG*L*RLAETQVCHLLS------PSLMKR-----QQPFWNWRKLWFGEVAKLKYSDNDRPTLSFQPAAGTVTIETSDGKQVMTAADLRRKCRCALCVEEFSGEPLLDPTTIPEDIVPSE 779
EEVEFVGNQIRPM AH + + + PMV+QLLSQFVTLTSWGELD P DIQ TLCQVLNITAAVIVTTPQ S + +L +++ F+ L +T ++ L A KQR+YI G + G + V + S P ++ + + F + EVAKLK+SDNDRP LSFQPA GTV IETS GKQVM AADLRR+CRCALCVEEFSG+PLLDP ++PE+IVP+E
Sbjct: 228 EEVEFVGNQIRPMTAHGVKLMSYGFVNQGAAIMRGPMVSQLLSQFVTLTSWGELDYLVIDMPPGTGDIQLTLCQVLNITAAVIVTTPQKLSFTDVVKGIDLFDTVNVPSVAVVENMAYYDAVDQTAFKTGLESNIEDLLTLDSDELSAAAAREGLASPPQDETALRAAVIAEVMKKRASTKQREYIFGKGHQMRLADMWGITNTIRMPLVADVASSGDSGIPFVVSKPDSDHSESFSQLAEAVVREVAKLKFSDNDRPMLSFQPAEGTVMIETSGGKQVMAAADLRRQCRCALCVEEFSGKPLLDPASVPENIVPTE 544
BLAST of mRNA_P-littoralis_Contig1159.11.1 vs. uniprot
Match: A0A835Z7N1_9STRA (HIGH-chlorophyll-fluorescence 101 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7N1_9STRA) HSP 1 Score: 102 bits (253), Expect = 5.990e-21 Identity = 95/307 (30.94%), Postives = 126/307 (41.04%), Query Frame = 3
Query: 33 VEFVGNQIRPMQAHDEAASCGR*IKEQPSCR--PMVTQLLSQFVTLTSWGELDA**STCLPVLVDIQPTLCQVLNITAAVIVTTPQSSASLTW*RELITILSMFQA*LWWRTWPTMTPSTEWL---------------GAKQRQYILGGAIKRDWRTCGG*L*RLAE--TQVCHLLSPSLMKRQQPFWN-----------------------------------WRKLWFG---EVAKLKYSDNDRPTLSFQPAAGTVTIET---SDGKQVMTAADLRRKCRCALCVEEFSGEPLLDPTTIPEDIVP 773
VEFVGN+I+P++A + E + PMV QLL QFVTLTSWG+LD P DIQ TLCQ LNITAAVIVTTPQ + +++ + MF A PS + A R GA+ D + A T + KR W +R+L EVAK++Y RP +++ A +TI+ + + A LRR CRCA CVEE +G PLLDP ++P + P
Sbjct: 228 VEFVGNEIKPLEARGVKLMSYGYVNEGAAIMRGPMVVQLLQQFVTLTSWGDLDYLLIDMPPGTGDIQLTLCQNLNITAAVIVTTPQRLSFA----DVVKGIDMFDA--------VNIPSIAVVENMAYYNEVDVDALADAAARLVGSSGAMPADAEQLQALVRSAAAAATTQRQVFGRGHSKRLADMWGMTNVVRMPLHADVAAAGDAGVPFVVAHADGEHAALYRELAESVVREVAKIRYGRAARPHVAYDEARHLITIDAGAAAAAAATVEPAALRRACRCAACVEELTGRPLLDPASVPAGVRP 522
BLAST of mRNA_P-littoralis_Contig1159.11.1 vs. uniprot
Match: B8CCD7_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCD7_THAPS) HSP 1 Score: 97.1 bits (240), Expect = 1.970e-19 Identity = 80/259 (30.89%), Postives = 123/259 (47.49%), Query Frame = 3
Query: 33 VEFVGNQIRPMQAHDEAASCGR*IKEQPSCR--PMVTQLLSQFVTLTSWGELDA**STCLPVLVDIQPTLCQVLNITAAVIVTTPQSSASLTW*REL-------ITILSMFQA*LWWRTWPTMTPSTEWLGAKQRQYILGGAIKRDWRTCGG*L*RLAETQVCHLLSPSLMKRQQPFWNWRKLWFGEVAKLKY--SDNDRPTLSFQPAAGTVTIETSDGKQV-MTAADLRRKCRCALCVEEFSGEPLLDPTTIPEDIVP 773
V FVG QI P++ D + + E + PMVTQLL QF++LT+WG LD P DIQ TL Q LNITAAVIVTTPQ + + R + + +++ + + T G K+R G G + + ++ +L + + K EVAK+K+ RP++S+ + ++ D + ++ A+LRR CRCA CVEE +G+ +L+P +I E + P
Sbjct: 150 VRFVGRQIAPLRRGDVSLMSFGYVNEGSAIMRGPMVTQLLDQFLSLTNWGALDYLIMDMPPGTGDIQLTLSQRLNITAAVIVTTPQELSFVDVERGVEMFDTVNVPCIAVVENMAYLEREETEMIRIFGPGHKRRLSEQWGIEHTYSVPLMGQIAQNGDSGTPFILDNPKSPQADIYRQLAKSVVSEVAKIKFCTGKGGRPSVSYDVEKSILRVDDGDIQNATISPAELRRGCRCAACVEELTGKQILNPASISESVKP 408
BLAST of mRNA_P-littoralis_Contig1159.11.1 vs. uniprot
Match: A0A2V3IH99_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH99_9FLOR) HSP 1 Score: 96.7 bits (239), Expect = 3.920e-19 Identity = 81/270 (30.00%), Postives = 127/270 (47.04%), Query Frame = 3
Query: 33 VEFVGNQIRPMQAHD-EAASCGR*IKEQPSCR-PMVTQLLSQFVTLTSWGELDA**STCLPVLVDIQPTLCQVLNITAAVIVTTPQSSASLTW*RELITILSMFQA*LWWRTWPTM----------TPSTE------WLGAKQRQYILGGAIKRDWRTCGG*L*RLAETQVCHLLSPSLMKRQQPFWNWRKLWFGEVAKLKYSDNDRPTLSFQPAAGTVTIE--TSDGKQVMTAADLRRKCRCALCVEEFSGEPLLDPTTIPEDIVPSEL 782
V+F +I+P+ + + S G E R PM+ +L+Q +T T WG LD P DIQ TL Q++N+TAA+IVTTPQ + + +++ + MF P++ P T+ G KQR G + L ++ V ++L+ + + N EVAK+K+ P +SF +G + I+ S+ +Q + A LRR+CRCALCV+E +G L+P IPE I P ++
Sbjct: 209 VQFADGRIQPLTCNGVKLMSFGYVNPESAIMRGPMIANVLNQLLTTTQWGALDYLIIDMPPGTGDIQLTLSQIVNMTAALIVTTPQKLSFV----DVVKGIDMFDK----VGVPSVGVVENMAYFVAPDTQKEHYVFGKGHKQRLVEQYGLVNAFSMPIDAELSERSDNGVPYVLAHPSSLIAEEYKNMASSVVREVAKIKHGGRRTPEVSFDEDSGFIVIKKPNSEHEQQVWPATLRRQCRCALCVDEMTGRVRLNPDDIPETITPKKM 470
BLAST of mRNA_P-littoralis_Contig1159.11.1 vs. uniprot
Match: A0A522UEP3_9BACT (Iron-sulfur cluster carrier protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A522UEP3_9BACT) HSP 1 Score: 93.2 bits (230), Expect = 4.720e-18 Identity = 70/236 (29.66%), Postives = 116/236 (49.15%), Query Frame = 3
Query: 126 PMVTQLLSQFVTLTSWGELDA**STCLPVLVDIQPTLCQVLNITAAVIVTTPQSSASLTW*RELITILSMFQA*LWWRTWPTMTPSTEWLG------AKQRQYILG-GAIKRDWRTCG----------G*L*RLAETQVCHLLSPSLMKRQQPFWNWRKLWFGEVAKLKYSDNDRPTLSFQPAAGTVTIETSDGKQVMTAADLRRKCRCALCVEEFSGEPLLDPTTIPEDIVPSEL 782
PMVTQ+++Q +T T WG+LD P DIQ TL Q++ ITAAVIVTTPQ A + +++ + MF + + E + ++ ++ G GA K+ G + RL+++ +L+ ++ + EV+K+K+ RP + ++ G + ++ V+ AA+LRR+CRCA C +EFSG P LDP T+ + + P +
Sbjct: 190 PMVTQVINQLLTQTDWGQLDYLIIDFPPGTGDIQLTLTQLIPITAAVIVTTPQQLAFV----DVVKGIQMFD-----QVKVPVVAVVENMSYFECNKCHEKHHLFGQGARKKLVEQFGIQSSFEIPILPEISRLSDSGQPVVLADGVLATH--YTGIADAVVREVSKIKFGGLGRPEIRYEAGRGILATTSAGAIYVIPAAELRRQCRCAACRDEFSGRPTLDPATVADSVFPEAI 414
BLAST of mRNA_P-littoralis_Contig1159.11.1 vs. uniprot
Match: A0A1E7EPY3_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EPY3_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.630e-17 Identity = 71/204 (34.80%), Postives = 100/204 (49.02%), Query Frame = 2
Query: 98 VNQGAAIMQAYGHPAAL-AVRHPDELGRTRRLVIDMPPGTGGHPADFVPGLEHYRSCHRHHAAKLSFTDVVKGIDN-DTVNVPSVAVVENMAYYDAVDGMARCKAAAVHFGRGHQARLADMWGIT----------VASCGDSGVPFVIAKPDE-EATAFLELAEAVVRGSGKAEVQRQR--------------QTDPVVPTSCR 628
+N+G+A+M+ L + G L++DMPPGTG L + +LSF DVV+G++ DTVNVP VAVVENMAYY++ D + FG GH+ RL++ WGI +A+ GDSG PFV+ PD +A + ELA +VV KA+ +R +P+ PT R
Sbjct: 261 INEGSAVMRGPMVSQLLDQFLSVTQWGSLDYLILDMPPGTGDIQLTLTQRLNITAAVIVTTPQELSFADVVRGVEMFDTVNVPCVAVVENMAYYES-DPIKI-------FGDGHKRRLSEQWGIEHMYSMPLTDQIATNGDSGTPFVLGHPDSPQAKIYRELATSVVSEVSKAKYSSRRPEINYIEEFNIIQFDDEPLAPTELR 456
BLAST of mRNA_P-littoralis_Contig1159.11.1 vs. uniprot
Match: R7Q4I6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4I6_CHOCR) HSP 1 Score: 90.5 bits (223), Expect = 5.390e-17 Identity = 74/274 (27.01%), Postives = 122/274 (44.53%), Query Frame = 3
Query: 33 VEFVGNQIRPMQAHD-EAASCGR*IKEQPSCR-PMVTQLLSQFVTLTSWGELDA**STCLPVLVDIQPTLCQVLNITAAVIVTTPQSSASLTW*RELITILSMFQA*LWWRTWPTMTPSTEWL--------------------GAKQRQYILGGAIKRDWRTCGG*L*RLAETQVCHLLSPSLMKRQQPFWNWRKLWFGEVAKLKYSDNDRPTLSFQPAAGTVTIE--TSDGKQVMTAADLRRKCRCALCVEEFSGEPLLDPTTIPEDIVPSEL 782
V+F +IRP++AH + S G + R PM+ +L+Q +T T WG LD P D+Q TL Q++N+TAAVIVTTPQ + + +++ + MF PS + G +QR G L +++ + ++++ + EVAK++Y P + + A+G + + ++ Q + A LRR+CRCALCV+E +G LDP + +D+ P +L
Sbjct: 216 VQFKDGRIRPLEAHGVKLMSFGYVNPDSAIMRGPMIANVLNQLLTTTEWGVLDYLVIDLPPGTGDVQLTLSQIINMTAAVIVTTPQKLSFV----DVVKGIDMFDK--------VSVPSVAVVENMSYFVAPDTGVKHHIFGKGHQQRLIEQYGITDSFSMPIDPELSEKSDSGIPYVVANPKSMLSDEYQRLASAVVQEVAKIQYGGLGIPDVQWDEASGNINVRMPNTETTQKIWPATLRRQCRCALCVDEMTGAQKLDPADVSDDVRPMKL 477
BLAST of mRNA_P-littoralis_Contig1159.11.1 vs. uniprot
Match: A0A7S1TBR1_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TBR1_9RHOD) HSP 1 Score: 89.7 bits (221), Expect = 9.400e-17 Identity = 82/270 (30.37%), Postives = 130/270 (48.15%), Query Frame = 3
Query: 33 VEFVGNQIRPMQAHD-EAASCGR*IKEQPSCR-PMVTQLLSQFVTLTSWGELDA**STCLPVLVDIQPTLCQVLNITAAVIVTTPQSSASLTW*RELITILSMFQ-------A*LWWRTWPTMTPSTEWLGAKQRQYILGGA--IKRDWRTCGG*-------L*RLAETQVCHLLSPSLMKRQQPFWNWRKLWFGEVAKLKYSDNDRPTLSFQPAAGTVTIETSDG--KQVMTAADLRRKCRCALCVEEFSGEPLLDPTTIPEDIVPSEL 782
VEF + I+PM + S G E R PM+ L+SQ +T T WGE+D P D+Q TL QV NI AAVIVTTPQ A + +++ + MF+ A + + T S G + R + G A +KRD+ + + +++ + ++S + Q + E+AK+++ P ++F G + I DG + + ADLRRKCRCA+CV+E +G P+LDP + + + P+ +
Sbjct: 205 VEFEDSLIKPMMYGGVKLMSYGYVNGETAVMRGPMIATLVSQLLTTTDWGEIDYLLIDMPPGTGDVQITLGQVANIDAAVIVTTPQRLAFV----DVVKGIQMFEKVNIPSIAVVENMAYFTAPES----GVRHRIFGEGFAERLKRDFGIENSFPVPIDPLVSQKSDSGIPFVVSCPDSESAQVYQEIAASVVQELAKIRFGGRKFPEVTFSKETGNIEIRI-DGTLSESIWPADLRRKCRCAVCVDEMTGRPILDPRDVDDGVQPTSI 465
BLAST of mRNA_P-littoralis_Contig1159.11.1 vs. uniprot
Match: A0A328RPE3_9BACT (Iron-sulfur cluster carrier protein n=1 Tax=Candidatus Marinamargulisbacteria bacterium SCGC AG-414-C22 TaxID=2184344 RepID=A0A328RPE3_9BACT) HSP 1 Score: 89.4 bits (220), Expect = 1.050e-16 Identity = 75/241 (31.12%), Postives = 117/241 (48.55%), Query Frame = 3
Query: 108 EQPSCR--PMVTQLLSQFVTLTSWGELDA**STCLPVLVDIQPTLCQVLNITAAVIVTTPQSSASLTW*RELITILSMFQA*LWWRTWPTMTPSTEWLG------AKQRQYILG-GAIKRDWRTCG----------G*L*RLAETQVCHLLSPSLMKRQQPFWNWRKLWFGEVAKLKYSDNDRPTLSFQPAAGTVTIETSDGKQVMTAADLRRKCRCALCVEEFSGEPLLDPTTIPEDIVP 773
EQP+ PMV+Q++SQF+ LT+WG+ D P DIQ TLCQ++ +TAA+IVTTPQ + + +++ + MF R + + E + ++QY+ G GA+KR G + + +T V + S S + F ++ + EV +L D P L F P G + + ++ LR C+ AL +EFS E L+DP +IP+DI P
Sbjct: 183 EQPAILRGPMVSQIISQFLLLTAWGDCDYLIIDMPPGTGDIQLTLCQIIPLTAAIIVTTPQHISFI----DVVKGIEMFD-----RLQVPVIGAVENMSYFQANEQSEKQYLFGKGALKRLVDEFGFENTLAIPITTAISQAGDTGVPFVESDSESSIKALFSDFAETVVTEVDRLAAGDLSLPKLGFVPKEGIIIQFNDLPELIINPKTLRLACQSALNRDEFSDELLIDPASIPDDIHP 414
BLAST of mRNA_P-littoralis_Contig1159.11.1 vs. uniprot
Match: B5Y591_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y591_PHATC) HSP 1 Score: 88.6 bits (218), Expect = 1.880e-16 Identity = 66/170 (38.82%), Postives = 87/170 (51.18%), Query Frame = 2
Query: 98 VNQGAAIMQAYGHPAAL----AVRHPDELGRTRRLVIDMPPGTGGHPADFVPGLEHYRSCHRHHAAKLSFTDVVKGIDN-DTVNVPSVAVVENMAYYDAVDGMARCKAAAVHFGRGHQARLADMWGIT----------VASCGDSGVPFVIAKPDEE-ATAFLELAEAVV 559
VN G+A+M+ L +V H G L++DMPPGTG L + +LSF DVV+G++ DTVNVP +AVVENMAYY++ D FG GH+ RL+ WGI +A+ GD+G PFV+ PD A + ELA AVV
Sbjct: 168 VNDGSAVMRGPMVTQLLDQFLSVTH---WGALDYLILDMPPGTGDIQLTLTQKLNITAAVIVTTPQELSFADVVRGVEMFDTVNVPCIAVVENMAYYESAD-----PEKIQIFGAGHRDRLSQQWGIEHSFSIPLLNKIAANGDNGTPFVLEFPDSPPAKIYQELASAVV 329 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1159.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1159.11.1 >prot_P-littoralis_Contig1159.11.1 ID=prot_P-littoralis_Contig1159.11.1|Name=mRNA_P-littoralis_Contig1159.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp MKRQQPFWNWRKLWFGEVAKLKYSDNDRPTLSFQPAAGTVTIETSDGKQVback to top mRNA from alignment at P-littoralis_Contig1159:54172..55834- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1159.11.1 ID=mRNA_P-littoralis_Contig1159.11.1|Name=mRNA_P-littoralis_Contig1159.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1663bp|location=Sequence derived from alignment at P-littoralis_Contig1159:54172..55834- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1159:54172..55834- >mRNA_P-littoralis_Contig1159.11.1 ID=mRNA_P-littoralis_Contig1159.11.1|Name=mRNA_P-littoralis_Contig1159.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig1159:54172..55834- (Pylaiella littoralis U1_48)back to top |