mRNA_P-littoralis_Contig1159.1.4 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1159.1.4 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE) HSP 1 Score: 198 bits (503), Expect = 3.920e-51 Identity = 119/245 (48.57%), Postives = 150/245 (61.22%), Query Frame = 1
Query: 5428 SAQSCSDGFTTGVDGNGVVCCAPGCSTCGGSSCGSVAAAAGLTAADCCGSNIKASGVFCRNGANEAPCILGGE--------STCSDGVTPGVDGNGVVCCPIGCSTCGGPSC---GAA----GDDCCGGPIAASGVFCGDGTNPAPCILGTAPAPAPVAPPVXXXXXXXXXXXXXPTCSDGMTVGIGSGSICCTLGCTKCGGPGCVTAGRAAGLGANDCCGVNVRASGVICDGTN-APCILPEAP 6114
SA++CS+G G+D NGVVCC C CGG+ C + AA GL + CCG +KAS +C NEAPCI+G +TCS+G+ G+DGNGVVCCP+GC CGG C GAA G CCGG I ASG +C D TN APCI+G++PAP+P TCS+G+ G+G +CC LGC +CGG GC T+G AAGLGA+ CCG +++AS CD TN APCI+ P
Sbjct: 189 SARTCSNGLE-GIDANGVVCCPLACGQCGGTGCNTSGAAFGLDGSSCCGGGVKASDEYCDE-TNEAPCIIGSRPTPSPTSANTCSNGLE-GIDGNGVVCCPLGCGQCGGTGCNTSGAAAGLDGSSCCGGSIKASGKYC-DETNDAPCIIGSSPAPSPTP---------------SETCSNGVEGIDGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCIIGSRP 414
BLAST of mRNA_P-littoralis_Contig1159.1.4 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI) HSP 1 Score: 188 bits (477), Expect = 3.870e-45 Identity = 116/250 (46.40%), Postives = 144/250 (57.60%), Query Frame = 1
Query: 5434 QSCSDGFTTGVDGNGVVCCAPGCSTCGGSSCGSVAAAAGLTAADCCGSNIKASGVFCRNGANEAPCILGGE--------------STCSDGVTPGVDGNGVVCCPIGCSTCGGPSCGAAG-------DDCCGGPIAASGVFCGDGTNPAPCILGTAPAPAPVAPPVXXXXXXXXXXXXXPTCSDGMTVGI-GSGSICCTLGCTKCGGPGCVTAGRAAGLGANDCCGVNVRASGVICDGTN-APCILPEAP 6114
Q+CSDG T G+DGNGVVCC GC C G CG+ +A GL + CCG +K+ G++C + NEAPCI+G TCSDG T G+DGNGVVCCPIGC C G CG AG + CCG + + G++C D TN APCI+G+ P V TCSDG T GI G+G +CC +GC +C G GC TAG A GLG+ CCG V++ G+ CD TN APCI+ P
Sbjct: 336 QTCSDG-TEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGGGVKSLGLYCDD-TNEAPCIIGSRPDTDDVDSESADETQTCSDG-TEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDD-TNEAPCIIGSRPDTDDV---------DSESADETQTCSDG-TEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCIIGSRP 571
BLAST of mRNA_P-littoralis_Contig1159.1.4 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI) HSP 1 Score: 172 bits (437), Expect = 7.010e-41 Identity = 125/255 (49.02%), Postives = 148/255 (58.04%), Query Frame = 1
Query: 5437 SCSDGFTTGVDGNGVVCCAPGCSTCGGSSCGSVAAAAGLTAADCCGSNIKASGVFCRNGANEAPCILGGE---------------------STCSDGVTPGVDGNGVVCCPIGCSTCGGPSCGAAG-------DDCCGGPIAASGVFCGDGTNPAPCILGTAPAPAPVAPPVXXXXXXXXXXXXXPTCSDGMTVGIGSGSICCTLGCTKCGGPGCVTAGRAAGLGANDCCGVNVRASGVICDGTN-APCILPEAP 6114
+CSDG T G+DGNGVVCC GC C GS C + AA GLT++ CCG IK+SG +C + APCI G TCSDG+ G+DGNGVVCCP+GC C G C AG CCGG I +SG +C D T APCI G+AP XXXXXXXXXXXX TCSDG+ G+G +CC LGC +C G GC TAG A GL ++ CCG +++SG CD T APCI AP
Sbjct: 269 TCSDG-TEGLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDD-TGVAPCIYGSAPDAGDDXXXXXXXXXXXXXXVGTCSDGIE-GLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDD-TGVAPCIYGSAPDAGDDX--XXXXXXXXXXXXXVGTCSDGIEGLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGRIKSSGNYCDDTGVAPCIYGSAP 517
BLAST of mRNA_P-littoralis_Contig1159.1.4 vs. uniprot
Match: A0A6H5L8H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H5_9PHAE) HSP 1 Score: 172 bits (436), Expect = 8.050e-40 Identity = 120/252 (47.62%), Postives = 144/252 (57.14%), Query Frame = 1
Query: 5428 SAQSCSDGFTTGVDGNGVVCCAPGCSTCGGSSCGSVAAAAGLTAADCCGSNIKASGVFCRNGANEAPCILGGE---------------STCSDGVTPGVDGNGVVCCPIGCSTCGGPSCGAAG-------DDCCGGPIAASGVFCGDGTNPAPCILGTAPAPAPVAPPVXXXXXXXXXXXXXPTCSDGMTVGIGSGSICCTLGCTKCGGPGCVTAGRAAGLGANDCCGVNVRASGVICDGTN-APCILPEAP 6114
S +CSDG G+DGNGVVCC GC C GS C + AA GLT++ CCG IK+SG +C + APCI G TC+DG+ G+DGNGVVCCP+GC C G C AG CCGG I +SG +C D T APCI G+AP XXXXXXXXX TCSDG+ G+G +CC LGC +C G GC T G A GL ++ CCG +++SG CD T APCI AP
Sbjct: 531 SRGTCSDGIE-GIDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDD-TGVAPCIYGSAPDADXXXXXXXXXXVGTCNDGIE-GIDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDD-TGVAPCIYGSAPD--------ADDXXXXXXXXXVGTCSDGIEGIDGNGVVCCPLGCGQCVGSGCSTDGAANGLTSSSCCGGEIKSSGNYCDDTGVAPCIYGSAP 770
BLAST of mRNA_P-littoralis_Contig1159.1.4 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE) HSP 1 Score: 168 bits (426), Expect = 1.500e-38 Identity = 124/252 (49.21%), Postives = 146/252 (57.94%), Query Frame = 1
Query: 5437 SCSDGFTTGVDGNGVVCCAPGCSTCGGSSCGSVAAAAGLTAADCCGSNIKASGVFCRNGANEAPCILGGE---------------STCSDGVTPGVDGNGVVCCPIGCSTCGGPSCGAAG-------DDCCGGPIAASGVFCGDGTNPAPCILGTAPAPAPVAPPVXXXXXXXXXXXXXP---TCSDGMTVGIGSGSICCTLGCTKCGGPGCVTAGRAAGLGANDCCGVNVRASGVICDGTN-APCILPEAP 6114
+CSDG G+DGNGVVCC GC C GS C AA GLT++ CCG IK+SG +C + APCI G TCSDG+ G+DGNGVVCCP+GC C G C AG CCGG I +SG +C D T APCI G+AP XXXXXXXXXXXXX TCSDG+ G+G +CC LGC +C G GC AG A GL ++ CCG +++SG CD T APCI AP
Sbjct: 469 TCSDGIE-GIDGNGVVCCPLGCGQCAGSGCSIAGAANGLTSSSCCGGGIKSSGNYCDD-TGVAPCIYGSAPDTDXXXXXXXXXXIGTCSDGIE-GIDGNGVVCCPLGCGQCAGSGCSIAGAANGLTSSSCCGGGIKSSGNYCDD-TGVAPCIYGSAPNADDXXXXXXXXXXXXXXXXXXXDVGTCSDGIEGIDGNGVVCCPLGCGQCAGSGCGAAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAP 716
BLAST of mRNA_P-littoralis_Contig1159.1.4 vs. uniprot
Match: D7G8L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L8_ECTSI) HSP 1 Score: 129 bits (325), Expect = 1.150e-29 Identity = 90/235 (38.30%), Postives = 121/235 (51.49%), Query Frame = 1
Query: 5425 RSAQSCSDGFTTGVDGNGVVCCAPGCSTCGGSSCGSVAAAAGLTAADCCGSNIKASGVFCRNGANEAPCILGG--ESTCSDGVTPGVDGNGVVCCPIGCSTCGGPSCGAAGDD-------CCGGPIAASGVFCGDGTNPAPCILGTAPAPAPVAPPVXXXXXXXXXXXXXPTCSDGMTVGIGSGSICCTLGCTKCGGPGCVTAGRAAGLGANDCCGVNVRASGVICDGTN-APCI 6099
++ +C+DG G+DGNGVVCC C CGG C A GL + CCG +K++ +C + +APCI G E C++G+ G+DGNGVVCCP+ C CGG C +G D CCGG + ++ +C D T APCI G+ P A + T + T +CGG GC +AG A+GLG+ CCG V++SG CD T APCI
Sbjct: 19 QAQSTCNDGIE-GIDGNGVVCCPRHCGQCGGEGCTGSGADFGLGSESCCGGGVKSANNYC-DVTGKAPCIYGSPPEGECNNGIE-GIDGNGVVCCPLDCGQCGGEGCSGSGADFGLGSESCCGGGVKSANNYC-DVTGKAPCIYGSPPEEALL------------------TTVNART--------------QQCGGEGCSSAGAASGLGSGSCCGHGVKSSGRYCDITEEAPCI 217
BLAST of mRNA_P-littoralis_Contig1159.1.4 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI) HSP 1 Score: 128 bits (322), Expect = 2.280e-26 Identity = 74/151 (49.01%), Postives = 96/151 (63.58%), Query Frame = 1
Query: 5416 FFDRSAQSCSDGFTTGVDGNGVVCCAPGCSTCGGSSCGSVAAAAGLTAADCCGSNIKASGVFCRNGANEAPCILGGE----STCSDGVTPGVDGNGVVCCPIGCSTCGGPSCGAAG-------DDCCGGPIAASGVFCGDGTNPAPCILGT 5835
F ++CS+G G++GNGVVCC C+ CGG+ C +AAGL + CCG IKASG +C + NEAPCI+G TCS+G+ G+DGNGVVCCP+ C+ CGG C +G + CCGG I ASG +C D TN APCI+G+
Sbjct: 464 FTTDEVETCSNGLE-GIEGNGVVCCPLECNQCGGTGCTMSGSAAGLGSESCCGGGIKASGAYCDD-TNEAPCIIGSRPTTVETCSNGLE-GIDGNGVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDD-TNEAPCIIGS 610
BLAST of mRNA_P-littoralis_Contig1159.1.4 vs. uniprot
Match: A0A6H5K5M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M2_9PHAE) HSP 1 Score: 116 bits (291), Expect = 2.970e-25 Identity = 87/217 (40.09%), Postives = 100/217 (46.08%), Query Frame = 1
Query: 5443 SDGFTTGVDGNGVVCCAPGCSTCGGSSCGSVAAAAGLTAADCCGSNIKASGVFCRNGANEAPCILGGES----------TCSDGVTPGVDGNGVVCCPIGCSTCGGPSCGAAG-------DDCCGGPIAASGVFCGDGTNPAPCILGTAPAPAPVAPPVXXXXXXXXXXXXXPTCSDGMTVGIGSGSICCTLGCTKCGGPGCVTAGRAAGLGANDCC 6042
SDG G+DGNGVVCC GC C G+ C + AA GL++ CCG IK SG +C + APCI G TCSDG+ G+DGNG VCCP+GC CGG C +AG CCGG I +SG +C D T AP L C D G ICC LGC CG GC GLG CC
Sbjct: 4 SDGIE-GIDGNGVVCCPLGCGQCVGTGCSTAGAANGLSSGSCCGGEIKDSGNYCDD-TGVAPCIYGSAPEDXXXXXXXXTCSDGIE-GIDGNGAVCCPLGCGQCGGTGCTSAGAANGLDSGSCCGGSIKSSGNYCDD-TGEAPNDL---------------------------ECIDHK------GEICCPLGCGPCGESGCGITSATNGLG-RSCC 182
BLAST of mRNA_P-littoralis_Contig1159.1.4 vs. uniprot
Match: A0A6H5JGP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP9_9PHAE) HSP 1 Score: 104 bits (260), Expect = 2.350e-21 Identity = 64/143 (44.76%), Postives = 83/143 (58.04%), Query Frame = 1
Query: 5434 QSCSDGFTTGVDGNGVVCCAPGCSTCGGSSCGSVAAAAGLTAADCCGSNIKASGVFCRNGANEAPCILGG--ESTCSDGVTPGVDGNGVVCCPIGCSTCGGPSCGAAG-------DDCCGGPIAASGVFCGDGTNPAPCILGT 5835
+C+DG G+DGNGVVCC C C G+ C + A GL + CCG +K +G +C + EAPCI G E CS G+ G+DGNGVVCCP+ C CGG C +AG + CC + +SG +C D T APCI G+
Sbjct: 46 SACNDGIE-GIDGNGVVCCPLECGQCAGTGCTNFGADFGLGSESCCGGGVKDAGNYC-DVTGEAPCIYGSPPEGECSGGIE-GIDGNGVVCCPLECGQCGGTGCSSAGAASGLGSESCCESGVDSSGRYC-DVTGEAPCIYGS 184
BLAST of mRNA_P-littoralis_Contig1159.1.4 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE) HSP 1 Score: 109 bits (273), Expect = 3.580e-20 Identity = 72/165 (43.64%), Postives = 87/165 (52.73%), Query Frame = 1
Query: 5632 ILGGESTCSDGVTPGVDGNGVVCCPIGCSTCGGPSCGAAG-------DDCCGGPIAASGVFCGDGTNPAPCILGTAPAPAPVAPPVXXXXXXXXXXXXXPTCSDGMTVGIGSGSICCTLGCTKCGGPGCVTAGRAAGLGANDCCGVNVRASGVICDGTNA-PCIL 6102
I + T DG T G+DGNGVVCCPIGC CGG C AG + CCGG + + GV+C D TN APCI+G+AP V TCS+G+ G +CC L C +CGG GC +AG A L CC V A V C+ TNA PCI+
Sbjct: 566 IESADDTQIDG-TEGIDGNGVVCCPIGCGQCGGDGCSTAGSANGLGSESCCGGGVKSLGVYCDD-TNEAPCIIGSAPDTDDV-----DSGISEESADDTQTCSNGIEGIDHKGEVCCPLACGQCGGTGCGSAGSAFELDGESCCSSQVLAGNVYCEDTNAAPCII 723 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1159.1.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1159.1.4 >prot_P-littoralis_Contig1159.1.4 ID=prot_P-littoralis_Contig1159.1.4|Name=mRNA_P-littoralis_Contig1159.1.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=475bp MSFKCFLKLHVKYKNFKRVKAHSSIPHPLFSTACPRNRFLPSFFDRSAQSback to top mRNA from alignment at P-littoralis_Contig1159:40033..50688+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1159.1.4 ID=mRNA_P-littoralis_Contig1159.1.4|Name=mRNA_P-littoralis_Contig1159.1.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=10656bp|location=Sequence derived from alignment at P-littoralis_Contig1159:40033..50688+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1159:40033..50688+ >mRNA_P-littoralis_Contig1159.1.4 ID=mRNA_P-littoralis_Contig1159.1.4|Name=mRNA_P-littoralis_Contig1159.1.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1425bp|location=Sequence derived from alignment at P-littoralis_Contig1159:40033..50688+ (Pylaiella littoralis U1_48)back to top |