mRNA_P-littoralis_Contig6.248.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.248.3
Unique NamemRNA_P-littoralis_Contig6.248.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig6.248.3 vs. uniprot
Match: D7FIM1_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM1_ECTSI)

HSP 1 Score: 903 bits (2333), Expect = 7.140e-306
Identity = 689/1196 (57.61%), Postives = 748/1196 (62.54%), Query Frame = 1 
Query:  586 MEGDGIGHPASLCRDCDRHTLQETDNVLTCLECGYTGCGSPPGRHLLRHCLTQPGDGHYFAASRERAEIFCARCCDYVYDVEFDSAVSRTDDNFGLPTEWD------AGGSSSRDGDACVRGRRXXXXXXXXHYASTXXXXXXXXXXXXXXPGSERSWPQPVLLSPARSRLVAAGVRGMFNLGNTCFMSSVLQAVLHISVVQSFFFGKGHDPARCEKLRKETSKLRSQILQYDSTASF-NHSGVNDHGGGGKKGGWATAEQTPIAKKIGNYCIACELARLFQDMFSTEAVAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRTARDESSAPGLRRTLAAHKQRAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGKAKNRQRSRDKASGTHHAAMATTATGWENTPEPPGARAVGQD------------------------PATAISQSSVGGSGGGDIGWSSLARQDATEFSASPSSKKTQPHATINGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGKAGAATTVKKGDMLNGQCLEDLNLAGFVQEVFAGVTRSDVVCTVCGDVSCTYERFLEVSLPVHPSEHEKQXXXXXXXXXXXXEKKLEAARLLVCGS--GGREESKLAASFRGRGSSMTLGIEMENGG-IAAKAPAPAAPARGGALSVVDDIGMAMEIPNGEVSSGTRVTASSXXXXXXXXXXXXXXXXXXXXXXXXVSPSESPVSLPVPVASVPPATTXXXXXXXXXESSTAQAVQQQKQQADPSSSGRGSPA-------------------SERTAPSTGGASPASTGTFSDDGSGRASVATTAXXXXXXXXXXXXXXXXXXXXXXQKQPTATVGRPRSSSSPKGVHRAGGRRGGXXRNKGAAAAPGPVRSITDCFARFAAKENLTVHMACDSCSAGSVGKTKQMSFCSLPRVLVLHLKRFDAMADKKIDDFVSFPARGLDMGRYLTGWPTAAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASAALAGDVPAPSLPYDLLAVVNHSGSLAQGHYTAYVKEIGRWFRFDDTWVHEVTEEEVLASEAYILFYFQRGADAAWRP 4014
            M+GDG+GHPAS+C +CD HTL E D+VLTCLECGYT CGSPP RH+LRHCLTQPGDGH FAASRERAEIFCARCCDYVYDVEFD+AVSR DD+FGL TEWD      AGG S+RDGDACVRGRR         Y                    ER+ P PVLLSPARSRLVAAGVRGMFNLGNTCFMSSVLQAVLHISV+QSFF  KGH+P+RCEKLRKET+KLRSQILQYDS ASF NH G      GG       +E+  IAKKIG YCIACELARLF DMFSTEA AATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDR ARDES+AP LRRTLAAHK RAK   XXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XX XXXXXXXXXX       EG  AKN ++    ASG    A A TA+ WE  P  PG    G                          PAT+  QS+ G SGG     S  A   +   S+ PS++   P AT  G                                  R K G  T  K G MLNGQCLEDLNLAGFVQEVFAGVTRSDVVCT CG VSCTYERFLEVSLPV P EHE++   XXXXX     +KL             G+ + ++  +     S  +     ENGG + AKA A         L V DD+  A E+PN   S    VTA+S XXXXXXXXXXXXXXXXX      + PS      P P +++ PAT             T+ + Q ++QQ DPSS GR SPA                   S+ T PSTG  SPAS  TFSDDGSGR S A  A                 XXXXX                       G        +K  + A GP RSITDCFARFAA+E+LTV MACDSCSA SV KTKQMSFCSLPRVLVLHLKRFDAMAD+KIDDFVSFPARGLDMG+YLTGWP AAA +                                                 A A L+GDVPAPSLPYDLLAVVNHSG +AQGHYTA+VKEIGRWFRFDDTWVHEV EEEVL+SEAYILFYFQRGADAAWRP
Sbjct:    1 MDGDGMGHPASMCHECDEHTLHEPDDVLTCLECGYTACGSPPRRHMLRHCLTQPGDGHCFAASRERAEIFCARCCDYVYDVEFDTAVSRVDDSFGLHTEWDNGGGWGAGGGSARDGDACVRGRRRRRARGDGFYRV------------------ERASPPPVLLSPARSRLVAAGVRGMFNLGNTCFMSSVLQAVLHISVMQSFFSEKGHEPSRCEKLRKETTKLRSQILQYDSNASFDNHPGAGRGSAGGXXXXXXGSEKMTIAKKIGEYCIACELARLFHDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRAARDESNAPVLRRTLAAHKLRAKQKQXXXXXXXXXXXXXXXXXXXXXSKGQLPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKXXKXXXXXXXXXXKG-----EGETAKNSRKRSRSASGVAPEAAAATASAWEGRPPLPGGHNSGDGHERGCAPPGHPSATGWQGENGAPHPATSAWQSN-GDSGGDMFAQSEHANGFSASSSSFPSNRNALPRATTAGRGGYNDGETVWTEDRWGGEEEEGAAA--------RAKVGNGTA-KNGSMLNGQCLEDLNLAGFVQEVFAGVTRSDVVCTACGHVSCTYERFLEVSLPVRPGEHERRQQQXXXXXR----EKLXXXXXXXXXKQEAGQTQGRMQENGVAGCSVPSSTARTENGGGVPAKAAA--------ILGVADDVASATEMPN---SGSAGVTATSPXXXXXXXXXXXXXXXXXS-----LPPSVQGAQAP-PASALRPATP------------TSSSAQPRQQQVDPSS-GRSSPAGSCAGGGSCKDNDPPPSEASQATTPSTGRVSPASA-TFSDDGSGRFSSAAAAAPALDAGEGRASPTRNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--------SKSRSVATGPTRSITDCFARFAARESLTVRMACDSCSAASVCKTKQMSFCSLPRVLVLHLKRFDAMADRKIDDFVSFPARGLDMGKYLTGWPAAAASSSAGGVTSGASPSSSPPLDTGTAKGAPPATPAAAG---------------AKAELSGDVPAPSLPYDLLAVVNHSGGMAQGHYTAFVKEIGRWFRFDDTWVHEVEEEEVLSSEAYILFYFQRGADAAWRP 1105
[Close]
BLAST of mRNA_P-littoralis_Contig6.248.3 vs. uniprot
Match: A0A835ZI08_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI08_9STRA)

HSP 1 Score: 145 bits (366), Expect = 5.500e-35
Identity = 87/213 (40.85%), Postives = 109/213 (51.17%), Query Frame = 1 
Query: 3370 SITDCFARFAAKENLTVHMACDSCSAGSVGKTKQMSFCSLPRVLVLHLKRFDAMADKKIDDFVSFPARGLDMGRYLTGWPTAAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASAALAGDVPAPSLPYDLLAVVNHSGSLAQGHYTAYVKEIGRWFRFDDTWVHEVTEEEVLASEAYILFYFQRGADAAW 4008
            ++  C   F A E L   + CD+CS G   KTKQMSFC+LP VLV+H+KRFDA+ D+K+DD V+FP + LDMG +L+GW   A                                                            VP P LPYDL AV+NHSGSL+QGHYT +V+E   W+R DD  V EV E EVL S+ YILFY +R A + W
Sbjct:  109 TLQQCLEGFTAVEELGGGLKCDACSGGGCAKTKQMSFCALPVVLVVHIKRFDALHDRKLDDPVAFPLQ-LDMGPFLSGWVKGAG---------------------------------------------------GGEGGGQGVPPPRLPYDLFAVINHSGSLSQGHYTCHVQEGQAWYRCDDALVAEVQESEVLDSQGYILFY-RRHATSNW 268
[Close]
BLAST of mRNA_P-littoralis_Contig6.248.3 vs. uniprot
Match: A0A087HCS6_ARAAL (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087HCS6_ARAAL)

HSP 1 Score: 133 bits (334), Expect = 2.910e-28
Identity = 102/322 (31.68%), Postives = 143/322 (44.41%), Query Frame = 1 
Query:  622 CRDCDRHTLQETDNVLTCLECGYTGCGSPPGRHLLRHCLTQPGDGHYFAASRERAEIFCARCCDYVYDVEFDSAVSRTDDNFGLPTEWDA-GGSSSRDGDACVRGRRXXXXXXXXHYASTXXXXXXXXXXXXXXPGSERSWPQPVLLSPARSRLVAAGVRGMFNLGNTCFMSSVLQAVLHISVVQSFFFGKGHDPARCEKLRKETSKLRSQILQYDSTASFNHSGVNDHGGGGKKGGWATAEQTPIAKKIGNYCIACELARLFQDMFSTEAVAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLD 1584
            CR+C    +     +  C+ C    C S    H  R   T PG  H  +   +RAE+FC  C D +YD +FDSAV     +       D  G   S  GD+  + RR                               R W    ++   +S    AG+RG+ NLG+TCFM+S+LQA+LH   ++++F    H+   C+      + LR   L Y              GGGG +G  A  +    A+KI   C+AC+   LF  +FS        GD +PY P  LL + W  +  LA YEQQDAH+F I++LDS+H  LD
Sbjct:   78 CRECGESFVPR---LYACVNCAAVSCHSHAAAHSQR---TMPG--HEISVDVDRAELFCCVCRDQIYDRDFDSAVVMAQTSTARNGYRDGEGDGESLSGDSIRKRRRVDY----------------------------RPWSLEGMVMENQSVDFPAGLRGLNNLGSTCFMNSILQALLHTVPLRNYFLSDKHNRDLCQ----HKNPLR---LDYSVQGG-------KRGGGGGRGKGAHVDIAQDARKI---CLACDFDALFSAVFSG-------GDRKPYSPAMLLHSWWRHAGNLASYEQQDAHDFFISILDSVHEMLD 339
[Close]
BLAST of mRNA_P-littoralis_Contig6.248.3 vs. uniprot
Match: UPI0019D54133 (ubiquitin C-terminal hydrolase 22-like isoform X2 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D54133)

HSP 1 Score: 125 bits (314), Expect = 2.360e-27
Identity = 105/382 (27.49%), Postives = 148/382 (38.74%), Query Frame = 1 
Query:  463 CPHLVGHPDRADLLRKLVDVRIEVNTALILKEKSTIGVFGAMEGDGIGHPASLCRDCDRHTLQETDNVLTCLECGYTGCGSPPGRHLLRHCLTQPGDGHYFAASRERAEIFCARCCDYVYDVEFDSAVSRTDDNFGLPTEWDAGGSSSRDGDACVRGRRXXXXXXXXHYASTXXXXXXXXXXXXXXPGSERSW-PQPV---LLSPA-----RSRLVAAGVRGMFNLGNTCFMSSVLQAVLHISVVQSFFFGKGHDPARCEKLRKETSKLRSQILQYDSTASFNHSGVNDHGGGGKKGGWATAEQTPIAKKIGNYCIACELARLFQDMFSTEAVAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHL 1581
            CPHL  H             R+       L+    +   G  E          C  C   +  ++  +  CL C    C S    H   H     G GH  A   +RAE+FCA C D VYD +FD AV     +  LP+      SS+         RR                               R+W P P    L+S A      S    AG+RG+ NLGNTCFM+SVLQA+LH   ++++F G  H+   C +     + +R +  + D                              A K+   C+AC+L  ++   FS        G+  PY P + L + W  +  LA YEQQDAHEF I++LD +H ++
Sbjct:   10 CPHLAAH-------------RLSSRPLRFLRRCLRVRPLGRPEIRRDPRELPRCSPCAAASPSQSPRLYACLSCAAVFCPS----HAASHASASAGPGHQIAVDVDRAELFCAACGDQVYDPDFDHAVFLAQSSSLLPST-----SSTXXXXXXXXXRRVDY----------------------------RAWAPDPAEFALMSSADPTTSASAAAPAGLRGLNNLGNTCFMNSVLQALLHAPPLRNYFLGDRHNRFLCPR----RTPVRHRATEAD------------------------------AAKVA--CLACDLDEIYSAAFS--------GERMPYSPAKFLYSWWQHASNLASYEQQDAHEFFISILDHIHENI 297
[Close]
BLAST of mRNA_P-littoralis_Contig6.248.3 vs. uniprot
Match: A0A565BBY6_9BRAS (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565BBY6_9BRAS)

HSP 1 Score: 129 bits (325), Expect = 4.800e-27
Identity = 103/331 (31.12%), Postives = 141/331 (42.60%), Query Frame = 1 
Query:  622 CRDCDRHTLQETDNVLTCLECGYTGCGSPPGRHLLRHC-LTQPGDGHYFAASRERAEIFCARCCDYVYDVEFDSAVSRTDDNFGLPTEWDAGGSSSRDGDACVRGRRXXXXXXXXHYASTXXXXXXXXXXXXXXPGSERSWPQPVLLSPARSRLVAAGVRGMFNLGNTCFMSSVLQAVLHISVVQSFFFGKGHDPARCEKLRKETSKLRSQILQYDSTASFNHSGVNDHGGGGKKGGWATAEQTPIAKKIGNYCIACELARLFQDMFSTEAVAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRTARDESSA 1611
            CR+C    +     +  C+ C    C SP   H   H   T PG  H  +   +RAE+FC  C D +YD +FDSAV        +     A G  S   D   + RR         Y                  G    +P               G+RG+ NLG+TCFM+SVLQA+LH + ++++F    H+   C+   K   +L S +                 GG GK G  A  +    A KI   C+AC+   LF  +FS        GD +PY P  LL + W  +  LA YEQQDAHEF I++LDS+H  L+   +   SA
Sbjct:   81 CRECGDSFVPR---LYACVNCAAVSCHSPSSSHAAAHSHRTMPG--HEISVDVDRAELFCCVCRDQIYDRDFDSAVV-------MAQTLTARGGDSPSADNVRKRRRVD-------YRPWSPALQERLLMENLVNGESADFPP--------------GLRGLNNLGSTCFMNSVLQALLHTAPLRNYFLSDKHNXDLCQ--HKTPLRLASSVQG------------GKRGGRGKGG--AHVDSAQDAYKI---CLACDFDALFSAVFSG-------GDRKPYSPAMLLHSWWRHAGNLASYEQQDAHEFFISILDSVHEMLENDHQKPQSA 352
[Close]
BLAST of mRNA_P-littoralis_Contig6.248.3 vs. uniprot
Match: A0A804M9E5_MAIZE (Ubiquitinyl hydrolase 1 n=2 Tax=Zea mays TaxID=4577 RepID=A0A804M9E5_MAIZE)

HSP 1 Score: 126 bits (317), Expect = 5.990e-27
Identity = 106/394 (26.90%), Postives = 149/394 (37.82%), Query Frame = 1 
Query:  463 CPHLVGHPDRADLLRKLVDVRIEVNTALILKEKSTIGVFGAMEGDGIGHPASLCRDCDRHTLQETDNVLTCLECGYTGCGSPPGRHLLRHCLTQPGDGHYFAASRERAEIFCARCCDYVYDVEFDSAVSRTDDNFGLPTEWDAGGSSSRDGDACVRGRRXXXXXXXXHYASTXXXXXXXXXXXXXXPGSERSWPQPVLLSPARSRLVAAGVRGMFNLGNTCFMSSVLQAVLHISVVQSFFFGKGHDPARCEKLRKETSKLRSQILQYDSTASFNHSGVNDHGGGGKKGGWATAEQTPIAKKIGNYCIACELARLFQDMFSTEAVAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRTARDESSAPGLRRTLAAHK 1644
            CPHL  H             R+       L+    +   G  E          C  C   +   T  +  CL C    C S    H   H     G GH  A   +RAE+FCA C D VYD +FD AV     +  LP+   +           +R RR         Y +               P +  S   P            AG+RG+ NLGNTCFM+SVLQA+LH   ++++F G  H+   C +     + +R +    D  A                                  C+AC+L  ++   FS        GD  PY P + L + W  +  LA YEQQDAHEF I++LD +H ++ +  + +S A G      AH+
Sbjct:   10 CPHLAAH-------------RLSSRPLRFLRRCLRVRPLGRPEIRRDPRELPRCSPCSAASPSPTSRLYACLSCAAVFCPS----HAATHASASAGPGHQIAVDVDRAELFCAACGDQVYDPDFDHAVFLAQSSSLLPST--SXXXXXXXXXPALRKRRRVD------YRAWAPDPAEFALMTSADPTTSASASAP------------AGLRGLNNLGNTCFMNSVLQALLHAPPLRNYFLGDRHNRFLCPR----RTPVRHRASDADRVA----------------------------------CLACDLDEIYSAAFS--------GDRTPYSPAKFLYSWWQHASNLASYEQQDAHEFFISILDHIHENI-KDDQQKSYAQGHGDCCIAHR 319
[Close]
BLAST of mRNA_P-littoralis_Contig6.248.3 vs. uniprot
Match: A0A1D6DW87_MAIZE (Ubiquitinyl hydrolase 1 n=12 Tax=Panicoideae TaxID=147369 RepID=A0A1D6DW87_MAIZE)

HSP 1 Score: 126 bits (317), Expect = 2.580e-26
Identity = 106/394 (26.90%), Postives = 149/394 (37.82%), Query Frame = 1 
Query:  463 CPHLVGHPDRADLLRKLVDVRIEVNTALILKEKSTIGVFGAMEGDGIGHPASLCRDCDRHTLQETDNVLTCLECGYTGCGSPPGRHLLRHCLTQPGDGHYFAASRERAEIFCARCCDYVYDVEFDSAVSRTDDNFGLPTEWDAGGSSSRDGDACVRGRRXXXXXXXXHYASTXXXXXXXXXXXXXXPGSERSWPQPVLLSPARSRLVAAGVRGMFNLGNTCFMSSVLQAVLHISVVQSFFFGKGHDPARCEKLRKETSKLRSQILQYDSTASFNHSGVNDHGGGGKKGGWATAEQTPIAKKIGNYCIACELARLFQDMFSTEAVAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRTARDESSAPGLRRTLAAHK 1644
            CPHL  H             R+       L+    +   G  E          C  C   +   T  +  CL C    C S    H   H     G GH  A   +RAE+FCA C D VYD +FD AV     +  LP+   +           +R RR         Y +               P +  S   P            AG+RG+ NLGNTCFM+SVLQA+LH   ++++F G  H+   C +     + +R +    D  A                                  C+AC+L  ++   FS        GD  PY P + L + W  +  LA YEQQDAHEF I++LD +H ++ +  + +S A G      AH+
Sbjct:   10 CPHLAAH-------------RLSSRPLRFLRRCLRVRPLGRPEIRRDPRELPRCSPCSAASPSPTSRLYACLSCAAVFCPS----HAATHASASAGPGHQIAVDVDRAELFCAACGDQVYDPDFDHAVFLAQSSSLLPST--SXXXXXXXXXPALRKRRRVD------YRAWAPDPAEFALMTSADPTTSASASAP------------AGLRGLNNLGNTCFMNSVLQALLHAPPLRNYFLGDRHNRFLCPR----RTPVRHRASDADRVA----------------------------------CLACDLDEIYSAAFS--------GDRTPYSPAKFLYSWWQHASNLASYEQQDAHEFFISILDHIHENI-KDDQQKSYAQGHGDCCIAHR 319
[Close]
BLAST of mRNA_P-littoralis_Contig6.248.3 vs. uniprot
Match: A0A2I0ABE4_9ASPA (Ubiquitinyl hydrolase 1 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0ABE4_9ASPA)

HSP 1 Score: 127 bits (319), Expect = 4.390e-26
Identity = 101/324 (31.17%), Postives = 132/324 (40.74%), Query Frame = 1 
Query:  601 IGHPASLCRDCDRHTLQETDNVLTCLECGYTGCGSPPGRHLLRHCLTQPGDGHYFAASRERAEIFCARCCDYVYDVEFDSAVSRTDDNFGLPTEWDAGGSSSRDGDACVRGRRXXXXXXXXHYASTXXXXXXXXXXXXXXPGSERSWPQPVLLSPARSRLVAAGVRGMFNLGNTCFMSSVLQAVLHISVVQSFFFGKGHDPARCEKLRKETSKLRSQILQYDSTASFNHSGVNDHGGGGKKGGWATAEQTPIAKKIGNYCIACELARLFQDMFSTEAVAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLH 1572
            +G P S    CD  +L     +  CL C    C      H   H ++ PG  H  A    RAE+FC  C D VYD EFD+ V              A  +   D    +R R+          A +               G    W                G+RG+ NLGNTCFMSSVLQA+LH   +Q++F G  H    C + R+                     GV  +GG G         + P        C+ C++ RLF ++FS        GD +PY P R L + W  S +LAGYEQQDAHEF I+VLD +H
Sbjct:  258 LGRPQSPIPRCDSCSLVSAGRLYLCLICSSISCPI----HAAAHPVSFPG--HDIAVDIARAELFCLSCGDQVYDPEFDTTVV-------------AAAAKIPDTPRRLRRRKAQALPTPPVAALSCYRVRNN--------GLRHPW----------------GLRGLNNLGNTCFMSSVLQALLHTRPIQNYFLGGHHKREVCRQRRRRR-------------------GVLANGGTG---------EVP--------CLVCDVERLFSEVFS--------GDLKPYSPARFLYSWWKNSAYLAGYEQQDAHEFFISVLDRIH 494
[Close]
BLAST of mRNA_P-littoralis_Contig6.248.3 vs. uniprot
Match: I1J2K3_BRADI (Ubiquitinyl hydrolase 1 n=4 Tax=Pooideae TaxID=147368 RepID=I1J2K3_BRADI)

HSP 1 Score: 125 bits (315), Expect = 4.590e-26
Identity = 100/375 (26.67%), Postives = 142/375 (37.87%), Query Frame = 1 
Query:  463 CPHLVGHPDRADLLRKLVDVRIEVNTALILKEKSTIGVFGAMEGDGIGHPASLCRDCDRHTLQETD--NVLTCLECGYTGCGSPPGRHLLRHCLTQPGDGHYFAASRERAEIFCARCCDYVYDVEFDSAVSRTDDNFGLPTEWDAGGSSSRDGDACVRGRRXXXXXXXXHYASTXXXXXXXXXXXXXXPGSERSWPQPVLLSPARSRLVAAGVRGMFNLGNTCFMSSVLQAVLHISVVQSFFFGKGHDPARCEKLRKETSKLRSQILQYDSTASFNHSGVNDHGGGGKKGGWATAEQTPIAKKIGNYCIACELARLFQDMFSTEAVAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHL 1581
            CPHL  H             R+       L+    +   G  E          C  C   T        +  CL C    C S    H   H  T P  GH  A   +RAE+FCA C D VYD +FD AV     +   P       +SS    +  + RR          A +                   S   P   + A +     G+RG+ NLGNTCFM+SVLQA+LH   ++++F G  H+   C +     + +R +    D+ A+                                 C+AC+L  ++   FS        G+  PY P + L + W  +  LA YEQQDAHEF I++LD +H ++
Sbjct:   10 CPHLAAH-------------RLTSRPLRFLRRCLRVRPLGRPEIRRDAREVPRCSPCASSTSPSPSPPRLYACLSCAAVFCAS----HAASHAATPPSPGHQIAVDVDRAELFCAACGDQVYDSDFDHAVVLAQSSTLCPAS-----TSSASAPSPRKRRRVDYRAWAPDPAESALM----------------SSADPATSARAAAAAAPPGLRGLNNLGNTCFMNSVLQALLHAPPLRNYFLGDRHNRFLCPR----RTPMRHRAAGADAKAA---------------------------------CLACDLDEIYSATFS--------GERTPYSPAKFLYSWWQHASNLASYEQQDAHEFFISILDHIHENI 301
[Close]
BLAST of mRNA_P-littoralis_Contig6.248.3 vs. uniprot
Match: UPI000C8731FE (ubiquitin C-terminal hydrolase 22 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI000C8731FE)

HSP 1 Score: 125 bits (314), Expect = 6.580e-26
Identity = 109/405 (26.91%), Postives = 165/405 (40.74%), Query Frame = 1 
Query:  430 ANGEPVKPTCTCPHLVGHPDRADLLRKLVDVRIEVNTALILKEKSTIGVFGAMEGDGIGHPASLCRDCDRHTLQETDNVLTCLECGYTGCGSPPGRHLLRHCLTQPGDGHYFAASRERAEIFCARCCDYVYDVEFDSAVSRTDDNFGLPTEWDAGGSSSRDGDACVRGRRXXXXXXXXHYASTXXXXXXXXXXXXXXPGSERSWPQPVLLSPARSRLVAAGVRGMFNLGNTCFMSSVLQAVLHISVVQSFFFGKGHDPARCEKLRKETSKLRSQILQYDSTASFNHSGVNDHGGGGKKGGWATAEQTPIAKKIGNYCIACELARLFQDMFSTEAVAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRTARDESSAPGLRRTLAAHK 1644
            ++G+P++    CPHL G+   A  L K        +    L+ +      G  E     H    C  C   +   +  +  CL C    C S    H   H   +PG  H  A   +RAE+FC  C D VYD +FD+AV    +   +P+      SS+     C+R RR                            GSE                +  G+RG+ NLGNTCFM+SVLQA+LH   ++++F    H+   C++  ++                             K+GG A   ++ +       C+AC+L  ++  +FS E +        PY P R L + W  +  LA YEQQDAHEF I++LD +H  +D     + ++PG      AH+
Sbjct:   11 SSGDPLRQPPPCPHLAGYRSNAHGLSKPFR-----SLQRCLRARPP----GRAEIRRDPHEIPRCGPC---SPSPSSRLYACLACAAVSCPS----HAPAHAAARPG--HEIAVDVDRAELFCCACRDQVYDRDFDAAVVLAQN---IPSS-----SSASPPSGCLRKRRRVDYRPWTPGPVERAVVGKGSSPLPFPGGSE----------------LPQGLRGLNNLGNTCFMNSVLQALLHTPPLRNYFLSDRHNRYVCQQNGRK-----------------------------KRGGNADGGESRV-------CLACDLDAMYSAVFSDERL--------PYSPARFLYSWWQHASNLASYEQQDAHEFFISMLDGIHEKVDE---HKPASPGNEECCIAHR 326
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.248.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIM1_ECTSI7.140e-30657.61Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZI08_9STRA5.500e-3540.85USP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A087HCS6_ARAAL2.910e-2831.68Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Arab... [more]
UPI0019D541332.360e-2727.49ubiquitin C-terminal hydrolase 22-like isoform X2 ... [more]
A0A565BBY6_9BRAS4.800e-2731.12Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Arab... [more]
A0A804M9E5_MAIZE5.990e-2726.90Ubiquitinyl hydrolase 1 n=2 Tax=Zea mays TaxID=457... [more]
A0A1D6DW87_MAIZE2.580e-2626.90Ubiquitinyl hydrolase 1 n=12 Tax=Panicoideae TaxID... [more]
A0A2I0ABE4_9ASPA4.390e-2631.17Ubiquitinyl hydrolase 1 n=1 Tax=Apostasia shenzhen... [more]
I1J2K3_BRADI4.590e-2626.67Ubiquitinyl hydrolase 1 n=4 Tax=Pooideae TaxID=147... [more]
UPI000C8731FE6.580e-2626.91ubiquitin C-terminal hydrolase 22 n=1 Tax=Dioscore... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:1014764..1021601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FIM1
Preferred nameUSP22
PFAMsUCH,zf-UBP
Model size4341
Max annot lvl2759|Eukaryota
KEGG koko:K11366,ko:K11848,ko:K11873
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000123,GO:0000124,GO:0000902,GO:0000904,GO:0003674,GO:0003682,GO:0003712,GO:0003713,GO:0003824,GO:0004843,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006282,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006357,GO:0006396,GO:0006464,GO:0006473,GO:0006475,GO:0006479,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006996,GO:0007154,GO:0007275,GO:0007346,GO:0007399,GO:0007409,GO:0007411,GO:0007412,GO:0008150,GO:0008152,GO:0008213,GO:0008233,GO:0008234,GO:0008347,GO:0008380,GO:0009056,GO:0009057,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010001,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010569,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010941,GO:0010942,GO:0016043,GO:0016070,GO:0016458,GO:0016477,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016574,GO:0016578,GO:0016579,GO:0016604,GO:0016607,GO:0016787,GO:0018022,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0019899,GO:0019941,GO:0021782,GO:0022008,GO:0030030,GO:0030154,GO:0030163,GO:0030182,GO:0030374,GO:0031175,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031647,GO:0031974,GO:0031981,GO:0032259,GO:0032446,GO:0032501,GO:0032502,GO:0032947,GO:0032989,GO:0032990,GO:0032991,GO:0034641,GO:0034729,GO:0034968,GO:0035616,GO:0036211,GO:0036459,GO:0040011,GO:0040029,GO:0042063,GO:0042221,GO:0042330,GO:0042393,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043543,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045787,GO:0045814,GO:0045892,GO:0045893,GO:0045931,GO:0045934,GO:0045935,GO:0046483,GO:0046695,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051052,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051603,GO:0051674,GO:0051726,GO:0060255,GO:0061564,GO:0061578,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070461,GO:0070536,GO:0070646,GO:0070647,GO:0071108,GO:0071704,GO:0071819,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097485,GO:0099114,GO:0101005,GO:0120036,GO:0120039,GO:0140096,GO:0140110,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902493,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905368,GO:1990234,GO:1990380,GO:2000112,GO:2000113,GO:2000779,GO:2001020,GO:2001032,GO:2001141
Exons6
Evalue2.51e-308
EggNOG OGsCOG5560@1|root,KOG1867@1|root,KOG1867@2759|Eukaryota,KOG1870@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-27_000270.1
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
Cds size3969
COG categoryO
BRITEko00000,ko01000,ko01002,ko03021,ko03036,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.248.3prot_P-littoralis_Contig6.248.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 1014944..1021409 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791242.5418124-UTR-P-littoralis_Contig6:1014763..10149431680791242.5418124-UTR-P-littoralis_Contig6:1014763..1014943Pylaiella littoralis U1_48UTRP-littoralis_Contig6 1014764..1014943 +
1680791242.6259985-UTR-P-littoralis_Contig6:1021409..10216011680791242.6259985-UTR-P-littoralis_Contig6:1021409..1021601Pylaiella littoralis U1_48UTRP-littoralis_Contig6 1021410..1021601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791242.5541077-CDS-P-littoralis_Contig6:1014943..10152941680791242.5541077-CDS-P-littoralis_Contig6:1014943..1015294Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1014944..1015294 +
1680791242.563206-CDS-P-littoralis_Contig6:1016222..10163121680791242.563206-CDS-P-littoralis_Contig6:1016222..1016312Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1016223..1016312 +
1680791242.572367-CDS-P-littoralis_Contig6:1016688..10172131680791242.572367-CDS-P-littoralis_Contig6:1016688..1017213Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1016689..1017213 +
1680791242.5836103-CDS-P-littoralis_Contig6:1017568..10178511680791242.5836103-CDS-P-littoralis_Contig6:1017568..1017851Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1017569..1017851 +
1680791242.6019192-CDS-P-littoralis_Contig6:1018199..10203191680791242.6019192-CDS-P-littoralis_Contig6:1018199..1020319Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1018200..1020319 +
1680791242.6117895-CDS-P-littoralis_Contig6:1020809..10214091680791242.6117895-CDS-P-littoralis_Contig6:1020809..1021409Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1020810..1021409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.248.3

>prot_P-littoralis_Contig6.248.3 ID=prot_P-littoralis_Contig6.248.3|Name=mRNA_P-littoralis_Contig6.248.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1323bp
MVKVAPSKPRLSSPKSTTGKAGEAATMAGGGSSKKSSKKAAAAAASNGGG
SVGKDTAAGESGAGQPTPAAAAAEAAALGAGASANGEPVKPTCTCPHLVG
HPDRADLLRKLVDVRIEVNTALILKEKSTIGVFGAMEGDGIGHPASLCRD
CDRHTLQETDNVLTCLECGYTGCGSPPGRHLLRHCLTQPGDGHYFAASRE
RAEIFCARCCDYVYDVEFDSAVSRTDDNFGLPTEWDAGGSSSRDGDACVR
GRRRRRARGDGHYASTSGWSQRQQQQQQQQPGSERSWPQPVLLSPARSRL
VAAGVRGMFNLGNTCFMSSVLQAVLHISVVQSFFFGKGHDPARCEKLRKE
TSKLRSQILQYDSTASFNHSGVNDHGGGGKKGGWATAEQTPIAKKIGNYC
IACELARLFQDMFSTEAVAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQ
DAHEFLIAVLDSLHGHLDRTARDESSAPGLRRTLAAHKQRAKQQQKKKEA
MAERDSEAQQQQQSPLPSPPAKKKQKEQKQKKKKAGKHGGGRSGGGSQSS
SAAVAVAQSSSPSSKLTAKAAKAATTSAAARGGGKEGGKAKNRQRSRDKA
SGTHHAAMATTATGWENTPEPPGARAVGQDPATAISQSSVGGSGGGDIGW
SSLARQDATEFSASPSSKKTQPHATINGGGSGNNTAGQREEGWCAGGGRE
EEDGGAAEAAAGRGKAGAATTVKKGDMLNGQCLEDLNLAGFVQEVFAGVT
RSDVVCTVCGDVSCTYERFLEVSLPVHPSEHEKQQHQQQQQQAQQLEKKL
EAARLLVCGSGGREESKLAASFRGRGSSMTLGIEMENGGIAAKAPAPAAP
ARGGALSVVDDIGMAMEIPNGEVSSGTRVTASSSSSSSSSSSAAAAASSS
SLSSLSSVSPSESPVSLPVPVASVPPATTPHPSQTPVPESSTAQAVQQQK
QQADPSSSGRGSPASERTAPSTGGASPASTGTFSDDGSGRASVATTATED
IDVGAGSLSSSPSPPPPANQKQPTATVGRPRSSSSPKGVHRAGGRRGGGG
RNKGAAAAPGPVRSITDCFARFAAKENLTVHMACDSCSAGSVGKTKQMSF
CSLPRVLVLHLKRFDAMADKKIDDFVSFPARGLDMGRYLTGWPTAAAPAA
TAVASPPPPSEGGVASGPSPPFMTFSSSSSPPTPCAAKTTTTAGAAAPAS
AALAGDVPAPSLPYDLLAVVNHSGSLAQGHYTAYVKEIGRWFRFDDTWVH
EVTEEEVLASEAYILFYFQRGADAAWRPPPAGAAGAAAAAAAAAAAAATA
GAVGAAASSPPPAKRKRRLSVP*
back to top

mRNA from alignment at P-littoralis_Contig6:1014764..1021601+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.248.3 ID=mRNA_P-littoralis_Contig6.248.3|Name=mRNA_P-littoralis_Contig6.248.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=6838bp|location=Sequence derived from alignment at P-littoralis_Contig6:1014764..1021601+ (Pylaiella littoralis U1_48)
ACGAAGTACAAGCGGAGACAAGCAGGTGCAAAAAGAGCTTGCACCTACGT
TGAGGTACTCCTCCCGCTGCGGCCAGGTCGAGCCACGGCTGCTGTAAGCC
CCAGCAGCAGCGGTACGACCGCTCCACTCCCCTCAGTGAAAAAACATCAA
GTCACGTTTCTTGACTACAATACAAACACGATGGTGAAGGTAGCTCCCAG
CAAACCCAGGCTGTCCTCTCCCAAGTCTACCACTGGAAAGGCAGGAGAAG
CAGCAACAATGGCAGGAGGAGGATCTAGCAAGAAGTCCTCAAAGAAAGCT
GCAGCCGCAGCAGCATCCAACGGTGGTGGTTCTGTTGGGAAGGACACAGC
AGCTGGAGAGTCTGGTGCCGGACAACCAACACCGGCAGCGGCGGCGGCGG
AGGCAGCCGCCCTTGGTGCTGGTGCTAGTGCCAACGGCGAGCCTGTCAAG
CCGACGTGCACCTGCCCGCACCTGGTGGGTCACCCTGATCGAGCGGACCT
GCTTCGAAAGCTGGTGGATGTGCGAATCGAGGTGCGCAGCAACAGTAGTA
ATTATGATGGCATAGTTTTAGCTACGCGGAGGTCTACAGCAATCGTACGC
ACAAGCCTTTCTGGCGTGGCACACGTACGTACAGCATTATCATCAGAAGG
AAGTAAAGACAAGGAGACAAACGACACAGCACTCCTCCGTCCTGATTTAC
AGCGGTGCGTGTGTGTGTTCATCCCATTTATTCTGGGCACCGTTCTACAC
CTTTGGGTACCGTATCATACTGTACTGGTATGTGAAAAAAAACGTGGATG
CACTCGTACAGCAGTGTACAAATATTCGAAGTACAGCAGTATACTCCGTC
TAGATACTGCTGTCACAGACCGTACTTCGAGTAAATCGCAATTTAAGCCA
ACTAACTCGCTCTCAAGGTGGACGAGCGAAGGTGAATTCACAGCAGTAGT
ACTGCTGCTGTACAACCCCTCTCTTACACGCCTACTGCGAACACTCCCAG
TTCTTTATGTTTCACGCTTCACCTCTTACGCTCAAATTCAACCACAGAGT
GAATGAAGTCAGCGAGCAATGCTGAGCCGACGAGCGGGTACGGTCATACA
TGGACTCTTTTTCGTCGTCATCGTTGTTGGGTGCTCCATTCTCATCGACG
TTCACTCAGCGAACGACTGCGACTTATTGAGCTGGACACCTCGAGGATTT
GTTGTGGAAGACGAGGGTCACTGACCTACTGCTGTAACCTACAAAAACTA
AATCAATACACCATGTAGGTTCACTACAGCCGTGCATGACATCACGAGCC
CACCCCTCCCCGCCCCACTCCCCTCCATCACGCCATCTACCCCATGTGTC
AGGGCAGTGAGTGCCTGCGCAGTTCAGAAAATTGAAAATTACAACCGGAC
GAAACGGTTTCACGCTCCGTCACCGTGTTTATTGCGTGTTTTTGTGTAAA
CTTGAAAAGGTCAACACGGCGCTCATCCTGAAGGAGAAGAGCACCATTGG
AGTCTTCGGGGCTATGGAAGGGGATGGTATTGGCCACCCAGCCTCTCTGG
TAAGAAGAACAGTAGCGCAGCACACGCTGCAGATATCATATATGCTCGTA
GAGTGAGATGCTGCCGAGCTTGTACCCGTGTTGTATTTAATTATTATTTT
TTTACGCTGGTTGTACTTGCTGCGCGTTGACAGAGCTACCATGTTGTAAT
ATGCCCATTGCTTACGGTATGTTGTGCGGCGCCCACGCGCCTGTCTATCC
ACGCCTGCCACACTACTGCGGTGCGAGCTGCCCGCAGCAACCTCACTTCT
CCACGGCGAAAGAAACACAGTTCACTCTATAAAGCCATGTTCCCGTTCGT
TATTGCCCCCCTTTTGCCCCCCCCCTCCCCTCCCCCCCCCAACACGCACG
CCTAAAAAATAATATTGGACAACAGTGCCGCGACTGCGACAGGCACACCC
TGCAGGAGACCGACAACGTCCTCACCTGCCTGGAGTGCGGCTACACCGGC
TGCGGGTCCCCGCCCGGCCGCCACCTGCTCCGTCACTGCCTCACGCAGCC
GGGGGACGGCCACTACTTCGCCGCCAGCCGCGAGCGCGCCGAGATTTTTT
GCGCCCGGTGCTGCGACTACGTGTACGACGTGGAGTTCGACTCCGCGGTC
TCGCGCACCGACGACAACTTCGGCCTTCCGACGGAGTGGGACGCCGGCGG
CAGCAGCAGCAGGGACGGGGATGCTTGCGTCCGCGGGCGGCGGCGGCGAC
GCGCGCGGGGGGACGGGCACTACGCGTCGACCAGCGGATGGTCGCAGAGG
CAGCAGCAGCAGCAGCAGCAGCAGCCCGGGAGCGAGCGGTCGTGGCCGCA
GCCGGTGCTGCTGTCGCCAGCGAGGAGCCGGCTCGTGGCCGCCGGGGTGA
GGGGCATGTTTAATCTGGGAAACACGTGCTTCATGAGCTCCGTGTTGCAG
GTGCGTTCTGTGTTTTGTTTCTGCGCGGGCGGGGGCGGGGGTGCACTCGC
GGTAGACACGTGTGTGCGGTATCCGTGTGTCTGGTGTACGCATGTGTGTG
TGTGGGTGTGCTCTGGTGGTGTTGCACTCTTCGACTTGGTTTTGAGCGTC
TCATAGATCAGGTTTGATATCATCCACCAGGTACCTATTTGCTTTCCCAG
CCAGCAACACCCACCCACGCACGCACACACGCACAGCTCGCCCTCTCATT
GTTTTTTATTTTTGTGGCCCTTGATTCTCGACGTTTTTTTTCCGCACTGC
CTATCTGTCTGCGCCATGGTCGGCCGGAAAAATGAAAAAAAAATGCCAAA
CACAGGCGGTGCTCCACATCTCCGTGGTGCAGTCCTTCTTTTTCGGGAAA
GGGCACGATCCGGCCCGGTGTGAGAAACTCCGCAAGGAGACGAGCAAGCT
GCGGTCTCAGATCCTCCAGTACGACTCCACCGCCTCCTTCAATCATTCGG
GGGTCAACGACCATGGTGGTGGAGGGAAGAAGGGGGGCTGGGCTACGGCA
GAGCAGACGCCTATCGCCAAGAAAATCGGCAACTACTGCATCGCTTGCGA
GCTCGCCCGGCTGTTCCAGGATATGTTTTCGACGGAAGGTGGGTTGTGGG
TTCTCAGTCGGTGGTGGATGGTGTGGCGTGGCGTGGCGTGGCGTGTTTTT
TTTTTCATCGTTTGAGAAAACTCCATACTTTTCGGGGGCCCCGTCGTCAG
CCCCGCTTCGGGACCGGTCAGTCCGCCCCCGTCTCTTCCATCCTCTTGTA
TACTTTCAATTGCCTCGTTTGAAGTCGGTCGGCCTGAGGACTTGGTTGGG
GATGCACTGCAAGCAAACTGCCAAATAGTCTGCCTTGACGTTTTGATTTC
TCGACGATTCGATTCATCCTTAACCCCCCCCCCCCCCTCATCTCTCCCCC
CTACCCTCCTGGCGGTACCAATGCCGTGCCTCCCAGCCGTGGCCGCAACT
CTCGGCGACACGGAGCCTTACGTGCCCCACCGCCTCCTCGAGGCCGTGTG
GAGTGCCTCGGAATTCCTGGCGGGATACGAGCAGCAGGACGCGCACGAGT
TCCTCATCGCCGTCCTTGATAGCCTGCACGGACATTTGGACCGTACCGCC
AGGGACGAGTCGAGCGCGCCGGGACTTCGACGCACCCTAGCCGCCCACAA
GCAGCGCGCCAAGCAGCAGCAGAAGAAGAAGGAGGCTATGGCAGAGAGAG
ACTCCGAGGCGCAGCAGCAGCAGCAATCGCCGCTGCCGTCGCCGCCTGCA
AAGAAAAAGCAGAAGGAGCAGAAGCAGAAGAAGAAGAAGGCGGGCAAGCA
TGGCGGCGGTCGGAGTGGCGGGGGGTCGCAGTCGTCCTCGGCGGCGGTGG
CGGTGGCGCAATCTTCTTCTCCTTCTTCCAAGCTGACGGCGAAAGCAGCA
AAGGCAGCAACAACGTCGGCCGCAGCACGAGGAGGTGGCAAGGAAGGAGG
TAAGGCGAAGAACCGACAACGCAGCCGCGACAAAGCCAGCGGTACCCATC
ACGCGGCGATGGCGACGACAGCTACCGGGTGGGAAAACACTCCCGAGCCG
CCCGGGGCGCGAGCGGTGGGTCAAGATCCCGCAACGGCGATATCTCAGTC
CAGTGTTGGCGGCAGTGGTGGTGGCGATATCGGTTGGTCTTCCCTTGCGC
GACAAGACGCGACCGAGTTTTCGGCGTCGCCGTCGAGCAAAAAAACGCAA
CCGCACGCGACGATAAATGGCGGTGGCAGCGGCAACAACACGGCCGGGCA
GAGAGAAGAAGGGTGGTGTGCTGGGGGCGGAAGGGAAGAAGAAGACGGGG
GGGCGGCGGAGGCTGCAGCAGGAAGAGGTAAGGCAGGTGCCGCCACCACC
GTCAAGAAGGGAGACATGCTGAATGGCCAGTGTTTGGAGGACCTGAACCT
GGCGGGGTTTGTCCAGGAGGTTTTCGCAGGAGTCACACGGTCGGACGTCG
TGTGCACCGTGTGCGGGGACGTTTCGTGCACGTACGAGCGTTTCCTTGAG
GTGTCACTGCCCGTACACCCTAGTGAGCACGAGAAGCAGCAGCACCAGCA
GCAGCAGCAGCAGGCGCAGCAGCTGGAGAAGAAGCTAGAGGCGGCGCGTT
TACTGGTGTGTGGCAGCGGTGGTAGAGAGGAAAGCAAGCTGGCTGCATCT
TTCAGAGGCCGTGGTAGCTCAATGACGTTAGGGATAGAAATGGAGAACGG
TGGAATAGCAGCAAAGGCGCCGGCGCCGGCGGCGCCAGCGCGGGGGGGCG
CTTTGAGTGTTGTCGACGACATCGGCATGGCGATGGAGATCCCCAACGGT
GAGGTCAGCAGTGGTACGCGGGTTACAGCGTCCTCCTCCTCCTCCTCTTC
CTCCTCCTCTTCCGCCGCCGCCGCCGCCTCGTCTTCGTCGTTATCATCTT
TGTCGTCGGTGTCACCCTCCGAGTCGCCAGTATCGCTGCCGGTGCCGGTT
GCATCGGTACCGCCAGCCACCACCCCGCATCCCTCCCAAACACCAGTTCC
CGAAAGCAGCACGGCGCAGGCGGTGCAGCAGCAGAAGCAACAAGCGGACC
CGTCATCGTCTGGAAGGGGCAGCCCGGCGTCAGAAAGAACGGCACCGAGC
ACCGGTGGAGCGTCTCCGGCGTCTACTGGGACATTCTCGGACGACGGCAG
CGGTCGAGCGTCGGTCGCCACTACCGCGACGGAAGATATAGATGTAGGGG
CCGGAAGTCTGTCCTCGTCTCCTTCCCCACCCCCGCCCGCGAATCAAAAG
CAACCGACCGCTACCGTGGGAAGGCCGAGGTCTTCTTCTTCTCCCAAAGG
GGTCCACAGGGCGGGAGGCAGGCGCGGCGGCGGTGGCAGGAACAAAGGTG
CGGCGGCGGCACCGGGGCCGGTTCGGAGCATCACCGACTGCTTCGCGAGG
TTCGCGGCCAAGGAGAACCTGACCGTGCACATGGCGTGCGACTCGTGCTC
GGCCGGGTCCGTGGGAAAAACCAAGCAGATGTCGTTCTGCTCGCTCCCTC
GAGTACTTGTTTTGCACCTCAAACGCTTCGACGCCATGGCCGACAAAAAA
ATTGACGTGAGTTGGTTGTCTGCACGGCCGCAGTCCAGTCCAGCCTAAGC
TCATGCTTTTTCGTGCGAAAGACGGAGGCCTAACCGATAGGCTCAGCTCA
AAATTTGTTGGAGTACAGACGAGCGAAAGCCGGAAGGGGAAGGAAGGGGG
TCCGCATAATCGTCCGCGGGGTCACATCCAGACCTTGCTGTAAAATTGAA
GGGTCTCTGTTTACGTCCTGGGGCTCCCATTCCGCGGGTACGGTTGGCTT
TGCCTGAGGAGTAATTTCAAAACCTTGCGATGGGCCGGCTCCCTGGACAG
ATGGGGGGTTCTTGTTCGAAACGAAAAGCTGGTTCCGAAATAGCTCAAGT
GCTTTTTTTGTCTTTCGGTCTCTGATGCCCTGCTTTTCCTGTCGGACTTC
TTTCTGTATCGTGGCAAAAAACCCAAGCAGCAGAAACGTCACCCTCCCCT
GCCCCTTGCCCCCACGCCCGCCCCACCCTTTCCAACTTTTTCCCAGGACT
TCGTAAGTTTCCCGGCTCGGGGCTTGGACATGGGGAGGTACCTCACGGGA
TGGCCGACGGCGGCGGCACCAGCAGCAACCGCAGTAGCCTCACCGCCACC
ACCCTCGGAGGGAGGGGTGGCTTCCGGACCATCACCCCCTTTTATGACTT
TTTCTTCGTCTTCATCGCCGCCGACTCCGTGCGCAGCAAAGACAACGACC
ACTGCCGGCGCCGCGGCCCCCGCTAGTGCTGCGCTTGCGGGCGACGTCCC
CGCGCCCTCCCTTCCCTACGACCTCCTGGCGGTGGTGAACCACTCGGGCA
GCCTGGCGCAGGGGCACTACACGGCGTACGTGAAGGAGATAGGCCGCTGG
TTCCGCTTCGACGACACGTGGGTGCACGAGGTGACCGAGGAGGAGGTCTT
GGCGAGCGAGGCGTATATCCTCTTCTACTTTCAGAGGGGGGCCGACGCGG
CCTGGAGGCCCCCCCCGGCGGGGGCGGCGGGAGCGGCGGCGGCGGCGGCG
GCAGCGGCGGCGGCGGCAGCGACGGCAGGGGCGGTCGGGGCGGCGGCTTC
GTCGCCCCCTCCGGCCAAGAGAAAGAGGCGGTTGTCGGTTCCATAAAACA
GTAGAGTGTGGTCAGTCTGTGTGTGCGCACGCGCACCCGCGTTGGATACA
GGCGCTGGCTCCGAGAGCTGAGAGAATGCCTCTCGGCGTGTGCTGTAGTA
TGTCCCGGTTACCCTTTTATTCCCCACGCAACAGAGCGAAAACATGATAT
TTCCTCCCTAGAGAATAGGTGGCACTCGGCGCGGCGCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig6:1014764..1021601+

>mRNA_P-littoralis_Contig6.248.3 ID=mRNA_P-littoralis_Contig6.248.3|Name=mRNA_P-littoralis_Contig6.248.3|organism=Pylaiella littoralis U1_48|type=CDS|length=3969bp|location=Sequence derived from alignment at P-littoralis_Contig6:1014764..1021601+ (Pylaiella littoralis U1_48)
ATGGTGAAGGTAGCTCCCAGCAAACCCAGGCTGTCCTCTCCCAAGTCTAC
CACTGGAAAGGCAGGAGAAGCAGCAACAATGGCAGGAGGAGGATCTAGCA
AGAAGTCCTCAAAGAAAGCTGCAGCCGCAGCAGCATCCAACGGTGGTGGT
TCTGTTGGGAAGGACACAGCAGCTGGAGAGTCTGGTGCCGGACAACCAAC
ACCGGCAGCGGCGGCGGCGGAGGCAGCCGCCCTTGGTGCTGGTGCTAGTG
CCAACGGCGAGCCTGTCAAGCCGACGTGCACCTGCCCGCACCTGGTGGGT
CACCCTGATCGAGCGGACCTGCTTCGAAAGCTGGTGGATGTGCGAATCGA
GGTCAACACGGCGCTCATCCTGAAGGAGAAGAGCACCATTGGAGTCTTCG
GGGCTATGGAAGGGGATGGTATTGGCCACCCAGCCTCTCTGTGCCGCGAC
TGCGACAGGCACACCCTGCAGGAGACCGACAACGTCCTCACCTGCCTGGA
GTGCGGCTACACCGGCTGCGGGTCCCCGCCCGGCCGCCACCTGCTCCGTC
ACTGCCTCACGCAGCCGGGGGACGGCCACTACTTCGCCGCCAGCCGCGAG
CGCGCCGAGATTTTTTGCGCCCGGTGCTGCGACTACGTGTACGACGTGGA
GTTCGACTCCGCGGTCTCGCGCACCGACGACAACTTCGGCCTTCCGACGG
AGTGGGACGCCGGCGGCAGCAGCAGCAGGGACGGGGATGCTTGCGTCCGC
GGGCGGCGGCGGCGACGCGCGCGGGGGGACGGGCACTACGCGTCGACCAG
CGGATGGTCGCAGAGGCAGCAGCAGCAGCAGCAGCAGCAGCCCGGGAGCG
AGCGGTCGTGGCCGCAGCCGGTGCTGCTGTCGCCAGCGAGGAGCCGGCTC
GTGGCCGCCGGGGTGAGGGGCATGTTTAATCTGGGAAACACGTGCTTCAT
GAGCTCCGTGTTGCAGGCGGTGCTCCACATCTCCGTGGTGCAGTCCTTCT
TTTTCGGGAAAGGGCACGATCCGGCCCGGTGTGAGAAACTCCGCAAGGAG
ACGAGCAAGCTGCGGTCTCAGATCCTCCAGTACGACTCCACCGCCTCCTT
CAATCATTCGGGGGTCAACGACCATGGTGGTGGAGGGAAGAAGGGGGGCT
GGGCTACGGCAGAGCAGACGCCTATCGCCAAGAAAATCGGCAACTACTGC
ATCGCTTGCGAGCTCGCCCGGCTGTTCCAGGATATGTTTTCGACGGAAGC
CGTGGCCGCAACTCTCGGCGACACGGAGCCTTACGTGCCCCACCGCCTCC
TCGAGGCCGTGTGGAGTGCCTCGGAATTCCTGGCGGGATACGAGCAGCAG
GACGCGCACGAGTTCCTCATCGCCGTCCTTGATAGCCTGCACGGACATTT
GGACCGTACCGCCAGGGACGAGTCGAGCGCGCCGGGACTTCGACGCACCC
TAGCCGCCCACAAGCAGCGCGCCAAGCAGCAGCAGAAGAAGAAGGAGGCT
ATGGCAGAGAGAGACTCCGAGGCGCAGCAGCAGCAGCAATCGCCGCTGCC
GTCGCCGCCTGCAAAGAAAAAGCAGAAGGAGCAGAAGCAGAAGAAGAAGA
AGGCGGGCAAGCATGGCGGCGGTCGGAGTGGCGGGGGGTCGCAGTCGTCC
TCGGCGGCGGTGGCGGTGGCGCAATCTTCTTCTCCTTCTTCCAAGCTGAC
GGCGAAAGCAGCAAAGGCAGCAACAACGTCGGCCGCAGCACGAGGAGGTG
GCAAGGAAGGAGGTAAGGCGAAGAACCGACAACGCAGCCGCGACAAAGCC
AGCGGTACCCATCACGCGGCGATGGCGACGACAGCTACCGGGTGGGAAAA
CACTCCCGAGCCGCCCGGGGCGCGAGCGGTGGGTCAAGATCCCGCAACGG
CGATATCTCAGTCCAGTGTTGGCGGCAGTGGTGGTGGCGATATCGGTTGG
TCTTCCCTTGCGCGACAAGACGCGACCGAGTTTTCGGCGTCGCCGTCGAG
CAAAAAAACGCAACCGCACGCGACGATAAATGGCGGTGGCAGCGGCAACA
ACACGGCCGGGCAGAGAGAAGAAGGGTGGTGTGCTGGGGGCGGAAGGGAA
GAAGAAGACGGGGGGGCGGCGGAGGCTGCAGCAGGAAGAGGTAAGGCAGG
TGCCGCCACCACCGTCAAGAAGGGAGACATGCTGAATGGCCAGTGTTTGG
AGGACCTGAACCTGGCGGGGTTTGTCCAGGAGGTTTTCGCAGGAGTCACA
CGGTCGGACGTCGTGTGCACCGTGTGCGGGGACGTTTCGTGCACGTACGA
GCGTTTCCTTGAGGTGTCACTGCCCGTACACCCTAGTGAGCACGAGAAGC
AGCAGCACCAGCAGCAGCAGCAGCAGGCGCAGCAGCTGGAGAAGAAGCTA
GAGGCGGCGCGTTTACTGGTGTGTGGCAGCGGTGGTAGAGAGGAAAGCAA
GCTGGCTGCATCTTTCAGAGGCCGTGGTAGCTCAATGACGTTAGGGATAG
AAATGGAGAACGGTGGAATAGCAGCAAAGGCGCCGGCGCCGGCGGCGCCA
GCGCGGGGGGGCGCTTTGAGTGTTGTCGACGACATCGGCATGGCGATGGA
GATCCCCAACGGTGAGGTCAGCAGTGGTACGCGGGTTACAGCGTCCTCCT
CCTCCTCCTCTTCCTCCTCCTCTTCCGCCGCCGCCGCCGCCTCGTCTTCG
TCGTTATCATCTTTGTCGTCGGTGTCACCCTCCGAGTCGCCAGTATCGCT
GCCGGTGCCGGTTGCATCGGTACCGCCAGCCACCACCCCGCATCCCTCCC
AAACACCAGTTCCCGAAAGCAGCACGGCGCAGGCGGTGCAGCAGCAGAAG
CAACAAGCGGACCCGTCATCGTCTGGAAGGGGCAGCCCGGCGTCAGAAAG
AACGGCACCGAGCACCGGTGGAGCGTCTCCGGCGTCTACTGGGACATTCT
CGGACGACGGCAGCGGTCGAGCGTCGGTCGCCACTACCGCGACGGAAGAT
ATAGATGTAGGGGCCGGAAGTCTGTCCTCGTCTCCTTCCCCACCCCCGCC
CGCGAATCAAAAGCAACCGACCGCTACCGTGGGAAGGCCGAGGTCTTCTT
CTTCTCCCAAAGGGGTCCACAGGGCGGGAGGCAGGCGCGGCGGCGGTGGC
AGGAACAAAGGTGCGGCGGCGGCACCGGGGCCGGTTCGGAGCATCACCGA
CTGCTTCGCGAGGTTCGCGGCCAAGGAGAACCTGACCGTGCACATGGCGT
GCGACTCGTGCTCGGCCGGGTCCGTGGGAAAAACCAAGCAGATGTCGTTC
TGCTCGCTCCCTCGAGTACTTGTTTTGCACCTCAAACGCTTCGACGCCAT
GGCCGACAAAAAAATTGACGACTTCGTAAGTTTCCCGGCTCGGGGCTTGG
ACATGGGGAGGTACCTCACGGGATGGCCGACGGCGGCGGCACCAGCAGCA
ACCGCAGTAGCCTCACCGCCACCACCCTCGGAGGGAGGGGTGGCTTCCGG
ACCATCACCCCCTTTTATGACTTTTTCTTCGTCTTCATCGCCGCCGACTC
CGTGCGCAGCAAAGACAACGACCACTGCCGGCGCCGCGGCCCCCGCTAGT
GCTGCGCTTGCGGGCGACGTCCCCGCGCCCTCCCTTCCCTACGACCTCCT
GGCGGTGGTGAACCACTCGGGCAGCCTGGCGCAGGGGCACTACACGGCGT
ACGTGAAGGAGATAGGCCGCTGGTTCCGCTTCGACGACACGTGGGTGCAC
GAGGTGACCGAGGAGGAGGTCTTGGCGAGCGAGGCGTATATCCTCTTCTA
CTTTCAGAGGGGGGCCGACGCGGCCTGGAGGCCCCCCCCGGCGGGGGCGG
CGGGAGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCAGCGACGGCA
GGGGCGGTCGGGGCGGCGGCTTCGTCGCCCCCTCCGGCCAAGAGAAAGAG
GCGGTTGTCGGTTCCATAA
back to top