mRNA_P-littoralis_Contig1157.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1157.11.1
Unique NamemRNA_P-littoralis_Contig1157.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1157.11.1 vs. uniprot
Match: A0A318QXT7_9PROT (HNHc domain-containing protein n=2 Tax=Komagataeibacter oboediens TaxID=65958 RepID=A0A318QXT7_9PROT)

HSP 1 Score: 52.0 bits (123), Expect = 9.710e-7
Identity = 28/76 (36.84%), Postives = 40/76 (52.63%), Query Frame = 1 
Query:   25 NGYGRIRIMGKQRSAHVMSCEIATKRAIEPGEVTRHLCGKNLCIAPHYLQVGDPSANGLDCLKHGSKRVNWTRKRL 252
            NGYG +R+ GK  SAH  + E+     ++  +V  HLC    C+ P +L +G  S N  DC   G +   + RKRL
Sbjct:   13 NGYGNVRLNGKNVSAHRRAYELFCGPVLDGMDVC-HLCDNRWCVNPDHLFLGTRSENMADCAAKG-RATGFYRKRL 86
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1157.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A318QXT7_9PROT9.710e-736.84HNHc domain-containing protein n=2 Tax=Komagataeib... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1157contigP-littoralis_Contig1157:40279..40536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size258
Hectar predicted targeting categoryother localisation
Exons1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789477.177801-CDS-P-littoralis_Contig1157:40278..405361680789477.177801-CDS-P-littoralis_Contig1157:40278..40536Pylaiella littoralis U1_48CDSP-littoralis_Contig1157 40279..40536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1157.11.1prot_P-littoralis_Contig1157.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1157 40279..40536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1157.11.1

>prot_P-littoralis_Contig1157.11.1 ID=prot_P-littoralis_Contig1157.11.1|Name=mRNA_P-littoralis_Contig1157.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
IFTGYIHTNGYGRIRIMGKQRSAHVMSCEIATKRAIEPGEVTRHLCGKNL
CIAPHYLQVGDPSANGLDCLKHGSKRVNWTRKRLG*
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mRNA from alignment at P-littoralis_Contig1157:40279..40536-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1157.11.1 ID=mRNA_P-littoralis_Contig1157.11.1|Name=mRNA_P-littoralis_Contig1157.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig1157:40279..40536- (Pylaiella littoralis U1_48)
ATTTTCACAGGGTACATACACACAAACGGGTATGGCCGAATTCGAATTAT
GGGGAAGCAAAGAAGCGCTCATGTCATGAGTTGCGAAATCGCTACAAAGA
GGGCAATTGAGCCAGGGGAGGTCACGAGGCATCTCTGTGGCAAAAATTTG
TGCATCGCCCCTCATTATTTGCAGGTTGGCGATCCCTCGGCCAACGGCTT
GGACTGTCTGAAACACGGGTCGAAACGTGTAAATTGGACGAGGAAAAGGT
TAGGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1157:40279..40536-

>mRNA_P-littoralis_Contig1157.11.1 ID=mRNA_P-littoralis_Contig1157.11.1|Name=mRNA_P-littoralis_Contig1157.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig1157:40279..40536- (Pylaiella littoralis U1_48)
ATTTTCACAGGGTACATACACACAAACGGGTATGGCCGAATTCGAATTAT
GGGGAAGCAAAGAAGCGCTCATGTCATGAGTTGCGAAATCGCTACAAAGA
GGGCAATTGAGCCAGGGGAGGTCACGAGGCATCTCTGTGGCAAAAATTTG
TGCATCGCCCCTCATTATTTGCAGGTTGGCGATCCCTCGGCCAACGGCTT
GGACTGTCTGAAACACGGGTCGAAACGTGTAAATTGGACGAGGAAAAGGT
TAGGGTGA
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