mRNA_P-littoralis_Contig6.238.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig6.238.1 vs. uniprot
Match: A0A6H5KBL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL1_9PHAE) HSP 1 Score: 405 bits (1041), Expect = 8.340e-135 Identity = 191/208 (91.83%), Postives = 207/208 (99.52%), Query Frame = 1
Query: 484 PLSWGAVGLLGIVATMAVGYYRMKWDEKQNQTASKVTSTGKPALGGPFTLVNMHGKPVTDKDFYGSFVLLYFGFCHCPDICPSELVKVGAIASKLEEKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKSFRVYFSKTEEHEEGEDYMLDHSIVIYLLAPKGDFLDFFTQRTTIADCVDRTVQNVKDFKA 1107
PL+WGAVGLLGIVA++AVGYYRMKW+EKQN+TAS+VTSTGKPALGGPFTLV+MHGKPVT+KD++GSFVLLYFGFCHCPDICPSELVKVGAIA+KLE+KLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAK++RVYFSKTEEHEEGEDY+LDHSIVIYLLAP GDFLDFFTQRTTIADCVDRTV+NVKDFKA
Sbjct: 143 PLTWGAVGLLGIVASLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEDKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVDRTVKNVKDFKA 350
BLAST of mRNA_P-littoralis_Contig6.238.1 vs. uniprot
Match: A0A835ZB06_9STRA (SCO1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB06_9STRA) HSP 1 Score: 261 bits (667), Expect = 6.580e-80 Identity = 121/205 (59.02%), Postives = 161/205 (78.54%), Query Frame = 1
Query: 484 PLSWGAVGLLGIVATMAVGYYRMKWDEKQNQTASKVTSTGKPALGGPFTLVNMHGKPVTDKDFYGSFVLLYFGFCHCPDICPSELVKVGAIASKLEEKLGAGV-VKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKSFRVYFSKTEEHEEGEDYMLDHSIVIYLLAPKGDFLDFFTQRTTIADCVDRTVQNVK 1095
P++W +VGL+GIV YY + +++ QT S+VTS GKP LGGP+TLV+MHG P TDKD+ GS+ LLYFGF HCPDICP+ELVK+G I + ++L V VKPVF+SVDPDRDSL QL+ YA+DFH ++YLTGTKDQVAKAA+++RVYFSK+ +HEE E+Y++DHSIV+YL+ G F+DF+TQR + DCV+R V+ ++
Sbjct: 57 PVTWASVGLVGIVGAGLAWYYTNEKEKRMTQTVSQVTSIGKPNLGGPWTLVDMHGVPKTDKDYLGSYTLLYFGFAHCPDICPAELVKLGHILQEASKQLKRPVPVKPVFISVDPDRDSLRQLRFYAKDFHPDVDYLTGTKDQVAKAARAYRVYFSKSADHEEDEEYLVDHSIVMYLVNDAGAFVDFYTQRMGVPDCVERLVKELR 261
BLAST of mRNA_P-littoralis_Contig6.238.1 vs. uniprot
Match: D7FIM6_ECTSI (SCO1 homolog, cytochrome c oxidase copper chaperone n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIM6_ECTSI) HSP 1 Score: 257 bits (657), Expect = 1.060e-77 Identity = 122/149 (81.88%), Postives = 133/149 (89.26%), Query Frame = 1
Query: 484 PLSWGAVGLLGIVATMAVGYYRMKWDEKQNQTASKVTSTGKPALGGPFTLVNMHGKPVTDKDFYGSFVLLYFGFCHCPDICPSELVKVGAIASKLEEKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKSF 930
PL+WGAVGLLGIVAT+AVGYYRMKW+EKQN+TAS+VTSTGKPALGGPFTLV+MHGKPVT+KD++GSFVLLYFGFCHCPDICPSELVKVGAIA+KLE KLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHH L + A F
Sbjct: 143 PLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHRSASLPAAXXXXXRQALLF 291
BLAST of mRNA_P-littoralis_Contig6.238.1 vs. uniprot
Match: A0A4D9DEH7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEH7_9STRA) HSP 1 Score: 238 bits (608), Expect = 6.290e-72 Identity = 111/198 (56.06%), Postives = 148/198 (74.75%), Query Frame = 1
Query: 484 PLSWGAVGLLGIVATMAVGYYRMKWDEKQNQTASKVTSTGKPALGGPFTLVNMHGKPVTDKDFYGSFVLLYFGFCHCPDICPSELVKVGAIASKLEEKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKSFRVYFSKTEEHEEGEDYMLDHSIVIYLLAPKGDFLDFFTQRTTIADCVDR 1077
P++W + ++ + T +Y+++ + Q Q KVTS GKPALGGP+TLV+ G+PVTD DF G F+LLYFGF HCPDICPSELVKVG I L+ + VV+PVF+SVDPDRD++ QL+HYAQDFH I YLTGT++Q+++ K++RVYFSK +E +E E+Y++DHSIV+YL+ P G FLDFFTQ AD V+R
Sbjct: 2 PVTWIGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDFTGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDLLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQDFHPRILYLTGTEEQLSRMTKAYRVYFSKADEEDE-ENYLVDHSIVLYLIGPDGSFLDFFTQSMIPADIVNR 198
BLAST of mRNA_P-littoralis_Contig6.238.1 vs. uniprot
Match: A0A7S3UQK5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQK5_HETAK) HSP 1 Score: 223 bits (567), Expect = 2.040e-66 Identity = 106/169 (62.72%), Postives = 132/169 (78.11%), Query Frame = 1
Query: 601 GKPALGGPFTLVNMHGKPVTDKDFYGSFVLLYFGFCHCPDICPSELVKVGAIASKLEEKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKSFRVYFSKTEEHEEGED-YMLDHSIVIYLLAPKGDFLDFFTQRTTIADCVDRTVQNVKDFK 1104
GKPALGGP+TLV+ G P TD DF G +VLLYFGF CPDICPSELVK+G I +L++ L + KPVF+SVDPDRDS+ QL+ YA+DFH YLTGTKDQV KAAK++RVYFSK +EH+ +D Y++DHSIVIYLL P G FLDFFTQ T + DC+ +TV++V + +
Sbjct: 2 GKPALGGPWTLVDQDGFPRTDNDFLGQWVLLYFGFTRCPDICPSELVKIGKIVDELDKTLPVEI-KPVFISVDPDRDSVGQLRAYAKDFHPRFTYLTGTKDQVFKAAKAYRVYFSKADEHDLNDDEYLVDHSIVIYLLGPDGKFLDFFTQSTKVTDCIQKTVRHVAEHE 169
BLAST of mRNA_P-littoralis_Contig6.238.1 vs. uniprot
Match: A0A7S2UVK0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVK0_9STRA) HSP 1 Score: 223 bits (567), Expect = 8.940e-65 Identity = 110/209 (52.63%), Postives = 141/209 (67.46%), Query Frame = 1
Query: 484 PLSWGAVGLLGIVATMAVGYYRMKWDEKQNQTASKVTSTGKPALGGPFTLVNMHGKPVTDKDFYGSFVLLYFGFCHCPDICPSELVKVGAIASKLEEKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKSFRVYFSKTEE--HEEGEDYMLDHSIVIYLLAPKGDFLDFFTQRTTIADCVDRTVQNVKDFK 1104
P+SW ++ L G V A Y + + Q +K T G+P +GGPFTLV+ G P TD F G FVLLYFGF CPDICPSELVK+G IA L+ + V PVF+SVDPDRD++ Q+K Y++DFH + +LTGTK QV K ++++RVYFS EE E GEDY++DHSIVIYL P G FLDFFTQ T + DCV R V+ ++ +K
Sbjct: 78 PVSWASLTLAGFVGLGAWYVYNQEKQRMEEQALAKETIVGQPLIGGPFTLVDADGIPRTDAYFRGQFVLLYFGFTRCPDICPSELVKIGKIADALDNLVEERVT-PVFISVDPDRDTIKQIKEYSKDFHPRMHFLTGTKAQVEKVSRAYRVYFSSAEEVDWESGEDYLVDHSIVIYLNGPDGKFLDFFTQSTNVNDCVKRIVKRIQSYK 285
BLAST of mRNA_P-littoralis_Contig6.238.1 vs. uniprot
Match: A0A662XZY4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZY4_9STRA) HSP 1 Score: 219 bits (557), Expect = 3.460e-64 Identity = 106/196 (54.08%), Postives = 143/196 (72.96%), Query Frame = 1
Query: 484 PLSWGAVGLLGIVATMAVGYYRMKWDEKQNQTASKVTSTGKPALGGPFTLVNMH-GKPVTDKDFYGSFVLLYFGFCHCPDICPSELVKVGAIASKLEEKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKSFRVYFSKTEEHEEGED-YMLDHSIVIYLLAPKGDFLDFFTQRTTIAD 1065
P++W + L G+V + AV YY + D Q QT SKVTS GKP LGGP+TLV+ G+ VTD F+G LLYFGF HCPDICP+ELV++G + KL+ + VV P+FV+VDP RD++AQ++ Y DFH + + LTGT+DQVA +K++RVYFSK +E+EE +D Y++DHSIV+YL+ P G+FLDFFTQ + D
Sbjct: 22 PITWSGLALAGVVGSGAVYYYYSEKDRLQTQTTSKVTSVGKPLLGGPWTLVDCDTGRAVTDASFHGKHTLLYFGFTHCPDICPNELVRIGEVLDKLQAENAPEVV-PLFVTVDPRRDTIAQMQIYKADFHPAFKMLTGTRDQVADISKAYRVYFSKADENEEDDDDYLVDHSIVMYLVGPDGEFLDFFTQSARVDD 216
BLAST of mRNA_P-littoralis_Contig6.238.1 vs. uniprot
Match: A0A3R7GYF8_9STRA (Uncharacterized protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GYF8_9STRA) HSP 1 Score: 218 bits (556), Expect = 8.350e-64 Identity = 108/196 (55.10%), Postives = 139/196 (70.92%), Query Frame = 1
Query: 484 PLSWGAVGLLGIVATMAVGYYRMKWDEKQNQTASKVTSTGKPALGGPFTLVNMHGK-PVTDKDFYGSFVLLYFGFCHCPDICPSELVKVGAIASKLEEKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKSFRVYFSKTEEHEEGED-YMLDHSIVIYLLAPKGDFLDFFTQRTTIAD 1065
P+SW + L G+V V YY + D Q QT SKVTS GKP LGGP+TLV+ K PVTD F G + LLYFGF HCPDICP+ELV++G + KLE + VV P+FVSVDP RD++AQ++ Y DFH + LTGT+DQVA K++RVYFSK +E+E+ +D Y++DHSIV+YL+ P G+FLDFFTQ + D
Sbjct: 37 PVSWSGLALAGVVGGSVVYYYYSEKDRLQTQTTSKVTSVGKPLLGGPWTLVDCDTKRPVTDASFRGQYSLLYFGFTHCPDICPNELVRIGDVLDKLESENLPEVV-PLFVSVDPKRDTIAQMQAYKADFHPKFKMLTGTRDQVADITKAYRVYFSKADENEDDDDDYLVDHSIVMYLVGPDGEFLDFFTQNARVED 231
BLAST of mRNA_P-littoralis_Contig6.238.1 vs. uniprot
Match: A0A7S3HFZ5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HFZ5_9STRA) HSP 1 Score: 216 bits (550), Expect = 4.220e-63 Identity = 106/216 (49.07%), Postives = 148/216 (68.52%), Query Frame = 1
Query: 484 PLSWGAVGLLGIVATMAVGYYRMKWDEKQNQTASKVTSTGKPALGGPFTLVNMHGKPVTDKDFYGSFVLLYFGFCHCPDICPSELVKVGAIASKLEEKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKSFRVYFSKTEEHE-EGEDYMLDHSIVIYLLAPKGDFLDFFTQRTTIADCVDRTV-------QNVKDFKA 1107
P+++ ++ I VG + + D K+ A + S GKPALGGP+ LV+ G P TD + G F LLYFGF CPDICPSELVK+G I +E+K + +P+F+SVDP RD++ Q+K+Y+QDFH SI YLTGT++QVA A+K++RVYFSK E+E + EDY++DHSIV+YL++P G+FLDFFTQ + D VD+ QN+KD ++
Sbjct: 4 PVTFWSLAFTAITGVGLVGMFYAEKDRKEKARAKNIRSVGKPALGGPWVLVDQDGHPRTDASYDGKFRLLYFGFTFCPDICPSELVKIGNIVKSVEKKKITDL-QPIFISVDPSRDTVGQMKNYSQDFHPSIVYLTGTREQVATASKAYRVYFSKANENENDEEDYLVDHSIVLYLVSPSGEFLDFFTQSMEVKDIVDKIAHYKEVYEQNLKDIES 218
BLAST of mRNA_P-littoralis_Contig6.238.1 vs. uniprot
Match: A0A2D4BK40_PYTIN (SCO1 family protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK40_PYTIN) HSP 1 Score: 216 bits (551), Expect = 5.490e-63 Identity = 104/200 (52.00%), Postives = 140/200 (70.00%), Query Frame = 1
Query: 484 PLSWGAVGLLGIVATMAVGYYRMKWDEKQNQTASKVTSTGKPALGGPFTLVNMH-GKPVTDKDFYGSFVLLYFGFCHCPDICPSELVKVGAIASKLEEKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKSFRVYFSKTEEHEEGE-DYMLDHSIVIYLLAPKGDFLDFFTQRTTIADCVDR 1077
P++W ++ L +V AV YY + + Q QT SKV S GKP LGGP+TLV+ G+ VTD F G F LLYFGF HCPDICP+ELV++G + KL ++ A V P+F++VDP+RD++AQ+ Y +DFH S + LTGT+DQVA KS+RVYFSK +E++ DY++DHSIV+YL+ P G FLDFFTQ + D V +
Sbjct: 44 PITWSSLALASVVGAGAVYYYYTEKERLQTQTTSKVVSIGKPLLGGPWTLVDCDTGRAVTDASFRGKFTLLYFGFTHCPDICPNELVRIGDVLDKLSKEENAPEVLPLFITVDPNRDTIAQMLEYKKDFHPSFKMLTGTRDQVADITKSYRVYFSKADENDXXXXDYLVDHSIVMYLVGPDGQFLDFFTQSARVDDIVKK 243 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig6.238.1 >prot_P-littoralis_Contig6.238.1 ID=prot_P-littoralis_Contig6.238.1|Name=mRNA_P-littoralis_Contig6.238.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=355bp MATRLAFAVASRAKPPVLRVASALKAPGLRVNPHACHPYRGSAAAFISSSback to top mRNA from alignment at P-littoralis_Contig6:955259..959142- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig6.238.1 ID=mRNA_P-littoralis_Contig6.238.1|Name=mRNA_P-littoralis_Contig6.238.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3884bp|location=Sequence derived from alignment at P-littoralis_Contig6:955259..959142- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig6:955259..959142- >mRNA_P-littoralis_Contig6.238.1 ID=mRNA_P-littoralis_Contig6.238.1|Name=mRNA_P-littoralis_Contig6.238.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1065bp|location=Sequence derived from alignment at P-littoralis_Contig6:955259..959142- (Pylaiella littoralis U1_48)back to top |