mRNA_P-littoralis_Contig6.214.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.214.1
Unique NamemRNA_P-littoralis_Contig6.214.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig6.214.1 vs. uniprot
Match: D7FIN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIN9_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 1.760e-96
Identity = 184/295 (62.37%), Postives = 210/295 (71.19%), Query Frame = 2 
Query:  257 QSAWAVRGGYQHGSSGSXXXXXNKGYDTHKYDQDNDHVSPRGATSTTDEDNGGDSNHNHSSDNQLEKIAADLRAKKDHISTNIQARGEXXXXXXXXXXXXXADEVLRERSPGALGELGGHASSYDSATAGMDVASRRSFFLGIRRIVLLVQAVELLAACMWQAAFPYGGVAGFVAGVAT----GGT-SKAAKSTIGEVVAEAAEAATAGDGRGRLGFAMAASLAQFSVYTMLLVWFGCDRVVMRAVRVTGWEHGAAAAWALTRLVTGSGGKLSHFAVCAWLAGMTFLCAYFGRQL 1126
            QSAW VRGGY+HGSS +     +    ++   QD     PRG T+                D+ ++K+AADLRA +DH          XXXXXXXXXXX   DEVLRERSP A GELGGHASSYDSATAGMDVA+RRSFFLGIRR++LLVQ VELLAACMWQAAFP+GG+AGF+   +T    GGT + A   T+ ++VA       AGDGRG LG A+AA LAQFSVYTMLLVWFGCDRVV+R VRVT WEHGAAA WALTRL+TG GGKL+H   CAWLAGM FLCAYFGRQL
Sbjct:    5 QSAWTVRGGYKHGSSATASNSGSNS--SNSVGQDG--FPPRGETTAV--------------DSNIDKLAADLRATRDHXXXXXXXXXXXXXXXXXXXXXKIVDEVLRERSPEAFGELGGHASSYDSATAGMDVANRRSFFLGIRRVLLLVQVVELLAACMWQAAFPFGGLAGFITAASTMNGEGGTPNTAVLDTLRDIVA-----GEAGDGRGPLGLALAACLAQFSVYTMLLVWFGCDRVVLRGVRVTAWEHGAAAVWALTRLLTGPGGKLTHLVACAWLAGMAFLCAYFGRQL 276
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIN9_ECTSI1.760e-9662.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:850198..852665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1765
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_000470.1
Cds size1059
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791240.4955544-UTR-P-littoralis_Contig6:850197..8508331680791240.4955544-UTR-P-littoralis_Contig6:850197..850833Pylaiella littoralis U1_48UTRP-littoralis_Contig6 850198..850833 -
1680791240.5457594-UTR-P-littoralis_Contig6:852595..8526651680791240.5457594-UTR-P-littoralis_Contig6:852595..852665Pylaiella littoralis U1_48UTRP-littoralis_Contig6 852596..852665 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791240.5127866-CDS-P-littoralis_Contig6:850833..8513191680791240.5127866-CDS-P-littoralis_Contig6:850833..851319Pylaiella littoralis U1_48CDSP-littoralis_Contig6 850834..851319 -
1680791240.5253844-CDS-P-littoralis_Contig6:852022..8525951680791240.5253844-CDS-P-littoralis_Contig6:852022..852595Pylaiella littoralis U1_48CDSP-littoralis_Contig6 852023..852595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.214.1prot_P-littoralis_Contig6.214.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 850834..852595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.214.1

>prot_P-littoralis_Contig6.214.1 ID=prot_P-littoralis_Contig6.214.1|Name=mRNA_P-littoralis_Contig6.214.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=353bp
MRFSQGIRADKARPVGPLIAYLVLMIITAQATSSLICDDTSRSPQRRTSR
STASDRMQTRAWQSAWAVRGGYQHGSSGSSSSSSNKGYDTHKYDQDNDHV
SPRGATSTTDEDNGGDSNHNHSSDNQLEKIAADLRAKKDHISTNIQARGE
AIAADLKAKQEKIADEVLRERSPGALGELGGHASSYDSATAGMDVASRRS
FFLGIRRIVLLVQAVELLAACMWQAAFPYGGVAGFVAGVATGGTSKAAKS
TIGEVVAEAAEAATAGDGRGRLGFAMAASLAQFSVYTMLLVWFGCDRVVM
RAVRVTGWEHGAAAAWALTRLVTGSGGKLSHFAVCAWLAGMTFLCAYFGR
QL*
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mRNA from alignment at P-littoralis_Contig6:850198..852665-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.214.1 ID=mRNA_P-littoralis_Contig6.214.1|Name=mRNA_P-littoralis_Contig6.214.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2468bp|location=Sequence derived from alignment at P-littoralis_Contig6:850198..852665- (Pylaiella littoralis U1_48)
GTCGTATCCAATAGGTTTCCGCTACCCCGCACGACGACACTCACCGCACG
TGCTATCTCAGCCACGAACGATGCGATTTTCTCAGGGCATACGCGCTGAT
AAAGCGCGACCCGTGGGACCTCTTATCGCCTATTTGGTCCTGATGATCAT
CACAGCGCAAGCCACCTCTTCTCTCATCTGCGACGATACATCCCGATCTC
CGCAGAGGAGGACGTCCCGATCTACAGCTTCGGATAGGATGCAGACGCGG
GCCTGGCAGAGCGCTTGGGCGGTGCGCGGAGGCTACCAGCACGGCAGTAG
CGGTAGCAGCAGTAGCAGCAGCAATAAAGGGTACGACACACACAAATACG
ATCAAGATAATGATCATGTTTCGCCACGCGGCGCAACATCAACAACCGAC
GAAGACAACGGCGGCGACTCCAACCACAATCACAGCAGTGATAACCAGCT
AGAGAAGATTGCTGCCGATCTTCGCGCGAAAAAAGACCACATCTCCACGA
ACATCCAGGCTCGGGGAGAGGCCATTGCGGCCGACCTGAAGGCTAAGCAG
GAGAAGATCGCCGACGAAGTGCTGAGGGAACGCTCGCCCGGCGCCCTGGG
CGAGCTCGGAGGACATGCGTCGTCGTACGATTCCGCCACAGCGGTAAGCA
CGAAGAGAGTGACTTCTGTTGTCCTGCTGTATACTCCTCCTGAAAAGGAT
TCTGGTGTGCAGAGTTTGTGCCGAGTGCTTGTTGTCGTGTTACCCCCTCG
TGATCGCCGTCGCTGGCAGCAGTGGATGCGATGCAAGCAAATTTGTTCCA
AATCCTCGATCGCTGAGCTTCAGTGAAAATACAGAGAATACACGTCTTGG
GCGGGAAAATACCTTTCGTTGGATAGTCACCCGCGCCCCCGTCGATAGTG
AAGATTGTCAGAGGATGATGGAGATAGTATAGCTTTTTCAACGGTTTGAA
TGTTTACAGGAGTACCGGAGTTTGTTTTGTTACAGAGCGCATTTTTTTTA
ATTGTTTGAAAGACGATGTCCTGTTGTTTATGTGTCAGAAGTTCAACAAC
CTCTCGTGTTCTTCGGATGCCGCCTCGAATTGGGGTTTAAAGACTTTGAC
GCCATACCGTTCATTGATGGCTCACCCGTATGGTCTAGATCTCACACGCC
TTCCACAAAAGATTCCCAGCGGTCAAGAACAGAGCGAGGCCCACACCACC
GTATCGTCTTTCAACACAGATAAGCCTCCCAGTCGACAGATGCAAAAACA
AAAAGCACAAGCAGCAATAGCATTTCCCTCCCCTGTACGCCCTTACCGCA
AAAAACTCGGCCATTTTTTTCGTCTCATGCCTCCTATCGCACGCAGGGCA
TGGACGTGGCCAGCCGGCGGTCCTTTTTCTTGGGCATCCGACGCATCGTG
CTTCTCGTCCAGGCGGTGGAACTCCTAGCAGCATGTATGTGGCAAGCCGC
TTTTCCCTACGGAGGGGTTGCGGGTTTCGTCGCTGGAGTAGCAACGGGGG
GCACATCGAAGGCAGCGAAATCAACAATAGGGGAGGTCGTGGCGGAGGCG
GCGGAGGCGGCGACGGCGGGTGATGGCAGGGGGCGGTTGGGTTTCGCCAT
GGCAGCGTCCCTGGCGCAGTTTTCCGTGTACACGATGCTGCTGGTGTGGT
TCGGGTGCGACAGAGTTGTCATGAGGGCGGTGAGAGTGACTGGGTGGGAA
CACGGGGCAGCGGCGGCGTGGGCGTTGACGAGGCTCGTTACCGGGTCGGG
AGGCAAGCTGTCGCACTTTGCCGTTTGCGCGTGGCTCGCGGGGATGACCT
TCTTGTGCGCGTACTTCGGGCGACAATTGTGATGTTAAGTTTGCTGTGGT
GACGTTTAGTTTCTGTTGTGTCTCGCAGTGCGTGACTTTCTTTTCTATGT
ACATGTGTTTAGTTTTGCACGGACGAGTGTGTAGACTAGGTTGCAGGATT
ATGGGCAACAAGGTTTGTGTCGGTAGTGTACTGGTTCATGTGAGCACGAA
GACAAGTTTTCGAAGGTGATCAGTGTCTGGATGAATTTAATACTCCGTAT
GTTCCATAGTTTTTACCCGGGAGGTGTTCTTGATGTCAGCCAGACTTACG
CGACCTGTCCCAGTCTTGGGGTTTTCTACGGGCAGCTAATGCTCTCTGTT
CGTTGATAGGTAGCACTCATTTGGATGGTTTGAATGTGCACGCGGGAAAA
GTGGTGGTAGCACCACTGTGAATTTTTTTATGGAGCGCCGAACACAAACG
AAAAACTGTAAATTTCTCTCTTCGCCGAGTTCGCTACTTTACGTAAAAGC
TGTGTTTTGTCACCAATAGAGGATACTTCCTCCCTCTGGTGGTAGCGGTA
CTATACCCCACCTTTGTAAGTGCTGTATTGTTATTTTCGTCCTGTGATAG
AATCCCGGGCTTGATTTTTGCGATGAGCTCGAATACGATAGTCGACAACA
ACAACACACTAGCTGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig6:850198..852665-

>mRNA_P-littoralis_Contig6.214.1 ID=mRNA_P-littoralis_Contig6.214.1|Name=mRNA_P-littoralis_Contig6.214.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1059bp|location=Sequence derived from alignment at P-littoralis_Contig6:850198..852665- (Pylaiella littoralis U1_48)
ATGCGATTTTCTCAGGGCATACGCGCTGATAAAGCGCGACCCGTGGGACC
TCTTATCGCCTATTTGGTCCTGATGATCATCACAGCGCAAGCCACCTCTT
CTCTCATCTGCGACGATACATCCCGATCTCCGCAGAGGAGGACGTCCCGA
TCTACAGCTTCGGATAGGATGCAGACGCGGGCCTGGCAGAGCGCTTGGGC
GGTGCGCGGAGGCTACCAGCACGGCAGTAGCGGTAGCAGCAGTAGCAGCA
GCAATAAAGGGTACGACACACACAAATACGATCAAGATAATGATCATGTT
TCGCCACGCGGCGCAACATCAACAACCGACGAAGACAACGGCGGCGACTC
CAACCACAATCACAGCAGTGATAACCAGCTAGAGAAGATTGCTGCCGATC
TTCGCGCGAAAAAAGACCACATCTCCACGAACATCCAGGCTCGGGGAGAG
GCCATTGCGGCCGACCTGAAGGCTAAGCAGGAGAAGATCGCCGACGAAGT
GCTGAGGGAACGCTCGCCCGGCGCCCTGGGCGAGCTCGGAGGACATGCGT
CGTCGTACGATTCCGCCACAGCGGGCATGGACGTGGCCAGCCGGCGGTCC
TTTTTCTTGGGCATCCGACGCATCGTGCTTCTCGTCCAGGCGGTGGAACT
CCTAGCAGCATGTATGTGGCAAGCCGCTTTTCCCTACGGAGGGGTTGCGG
GTTTCGTCGCTGGAGTAGCAACGGGGGGCACATCGAAGGCAGCGAAATCA
ACAATAGGGGAGGTCGTGGCGGAGGCGGCGGAGGCGGCGACGGCGGGTGA
TGGCAGGGGGCGGTTGGGTTTCGCCATGGCAGCGTCCCTGGCGCAGTTTT
CCGTGTACACGATGCTGCTGGTGTGGTTCGGGTGCGACAGAGTTGTCATG
AGGGCGGTGAGAGTGACTGGGTGGGAACACGGGGCAGCGGCGGCGTGGGC
GTTGACGAGGCTCGTTACCGGGTCGGGAGGCAAGCTGTCGCACTTTGCCG
TTTGCGCGTGGCTCGCGGGGATGACCTTCTTGTGCGCGTACTTCGGGCGA
CAATTGTGA
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